Detail Information

Basic Information:


  VIRBase ID:  

HHID00072064

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           AKNA:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p AKNA
miRBase
Accession/Entrez ID		 MIMAT0014983 80709
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR AKNA
chr9:117115722(-) A-I      intronic
chr9:117115721(-) A-I      intronic
chr9:117115676(-) A-I      intronic
chr9:117116835(-) A-I      intronic
chr9:117115641(-) A-I      intronic
chr9:117116845(-) A-I      intronic
chr9:117116871(-) A-I      intronic
chr9:117116881(-) A-I      intronic
chr9:117116893(-) A-I      intronic
chr9:117116861(-) A-I      intronic
chr9:117116906(-) A-I      intronic
chr9:117116962(-) A-I      intronic
chr9:117117234(-) A-I      intronic
chr9:117117247(-) A-I      intronic
chr9:117117270(-) A-I      intronic
chr9:117117325(-) A-I      intronic
chr9:117117343(-) A-I      intronic
chr9:117117351(-) A-I      intronic
chr9:117117334(-) A-I      intronic
chr9:117117333(-) A-I      intronic
chr9:117117328(-) A-I      intronic
chr9:117117323(-) A-I      intronic
chr9:117146634(-) A-I      intronic
chr9:117117358(-) A-I      intronic
chr9:117144744(-) A-I      intronic
chr9:117144627(-) A-I      intronic
chr9:117117503(-) A-I      intronic
chr9:117143978(-) A-I      intronic
chr9:117144861(-) A-I      intronic
chr9:117117552(-) A-I      intronic
chr9:117117594(-) A-I      intronic
chr9:117117684(-) A-I      intronic
chr9:117117633(-) A-I      intronic
chr9:117117630(-) A-I      intronic
chr9:117117625(-) A-I      intronic
chr9:117116829(-) A-I      intronic
chr9:117116812(-) A-I      intronic
chr9:117116804(-) A-I      intronic
chr9:117116799(-) A-I      intronic
chr9:117116737(-) A-I      intronic
chr9:117115763(-) A-I      intronic
chr9:117115726(-) A-I      intronic
chr9:117144768(-) A-I      intronic
chr9:117115717(-) A-I      intronic
chr9:117146679(-) A-I      intronic
chr9:117117217(-) A-I      intronic
chr9:117117730(-) A-I      intronic
chr9:117117279(-) A-I      intronic
chr9:117115642(-) A-I      intronic
chr9:117115740(-) A-I      intronic
chr9:117117593(-) A-I      intronic
chr9:117146633(-) A-I      intronic
chr9:117117225(-) A-I      intronic
chr9:117115720(-) A-I      intronic
chr9:117144626(-) A-I      intronic
chr9:117116917(-) A-I      intronic
chr9:117144849(-) A-I      intronic
chr9:117116947(-) A-I      intronic
chr9:117097884(-) A-I      3'UTR
chr9:117117232(-) A-I      intronic
chr9:117115708(-) A-I      intronic
chr9:117144052(-) A-I      intronic
chr9:117115723(-) A-I      intronic
chr9:117116759(-) A-I      intronic
chr9:117115810(-) A-I      intronic
chr9:117115683(-) A-I      intronic
chr9:117147258(-) A-I      intronic
chr9:117117627(-) A-I      intronic
chr9:117115672(-) A-I      intronic
chr9:117117292(-) A-I      intronic
chr9:117144130(-) A-I      intronic
chr9:117117209(-) A-I      intronic
chr9:117144751(-) A-I      intronic
chr9:117144636(-) A-I      intronic
chr9:117117330(-) A-I      intronic
chr9:117117337(-) A-I      intronic
chr9:117115704(-) A-I      intronic
chr9:117146621(-) A-I      intronic
chr9:117115719(-) A-I      intronic
chr9:117143998(-) A-I      intronic
chr9:117117604(-) A-I      intronic
chr9:117144688(-) A-I      intronic
chr9:117117620(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED AKNA
chr9:117114447(-) A-I intron -    15342557
chr9:117114643(-) A-I intron -    15342557
chr9:117114660(-) A-I intron -    15342557
chr9:117114673(-) A-I intron -    15342557
chr9:117114674(-) A-I intron -    15342557
chr9:117114675(-) A-I intron -    15342557
chr9:117114681(-) A-I intron -    15342557
chr9:117114711(-) A-I intron -    15342557
chr9:117114714(-) A-I intron -    15342557
chr9:117114728(-) A-I intron -    15342557
chr9:117114729(-) A-I intron -    15342557
chr9:117114733(-) A-I intron -    15342557
chr9:117114783(-) A-I intron -    15342557
chr9:117114790(-) A-I intron -    15342557
chr9:117114794(-) A-I intron -    15342557
chr9:117114795(-) A-I intron -    15342557
chr9:117114801(-) A-I intron -    15342557
chr9:117114814(-) A-I intron -    15342557
chr9:117114825(-) A-I intron -    15342557
chr9:117114833(-) A-I intron -    15342557
chr9:117114839(-) A-I intron -    15342557
chr9:117114875(-) A-I intron -    15342557
chr9:117115132(-) A-I intron -    15342557
chr9:117113896(-) A-G intron -    22484847
chr9:117144688(-) A-G intron -    22484847
chr9:117146679(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase AKNA
chr9:117096997-117096998(-) m6A 3'UTR       -
chr9:117097069-117097070(-) m6A 3'UTR       27371828
chr9:117097077-117097078(-) m6A 3'UTR       27371828
chr9:117097082-117097083(-) m6A 3'UTR       27371828
chr9:117097089-117097090(-) m6A 3'UTR       27371828
chr9:117097121-117097122(-) m6A 3'UTR       27371828
chr9:117097225-117097226(-) m6A 3'UTR       -
chr9:117097261-117097262(-) m6A 3'UTR       -
chr9:117097271-117097272(-) m6A 3'UTR       -
chr9:117098427-117098428(-) m6A 3'UTR//exon       27773535
chr9:117098739-117098740(-) m6A 3'UTR//exon       27773535
chr9:117098843-117098844(-) m6A 3'UTR//exon       27773535
chr9:117098907-117098908(-) m6A 3'UTR//exon       26404942//27773535
chr9:117098936-117098937(-) m6A 3'UTR//exon       26404942//27773535
chr9:117098979-117098980(-) m6A 3'UTR//exon       26404942
chr9:117098995-117098996(-) m6A 3'UTR//exon       26404942
chr9:117099067-117099068(-) m6A 3'UTR//exon       26404942
chr9:117099504-117099505(-) m6A CDS//exon       28052920//27773535
chr9:117099567-117099568(-) m6A CDS//exon       28052920//27773535
chr9:117103907-117103908(-) m6A CDS//exon       27773535
chr9:117107207-117107208(-) m6A exon//intron       -
chr9:117107251-117107252(-) m6A exon//intron       -
chr9:117108009-117108010(-) m6A exon//intron       -
chr9:117108171-117108172(-) m6A CDS//exon       27371828
chr9:117108228-117108229(-) m6A CDS//exon       27371828
chr9:117108238-117108239(-) m6A CDS//exon       27371828
chr9:117110036-117110037(-) m6A CDS       27371828
chr9:117110055-117110056(-) m6A CDS//exon       27371828
chr9:117110123-117110124(-) m6A CDS//exon       27371828
chr9:117113175-117113176(-) m6A CDS       27371828
chr9:117113185-117113186(-) m6A CDS       27371828
chr9:117113238-117113239(-) m6A CDS       27773535//27371828
chr9:117113257-117113258(-) m6A CDS       27773535//27371828
chr9:117118222-117118223(-) m6A CDS       27773535//27371828
chr9:117118405-117118406(-) m6A CDS//exon       24981863//27773535//27371828
chr9:117119170-117119171(-) m6A CDS//exon       24981863//27773535//27371828
chr9:117119197-117119198(-) m6A CDS//exon       27773535//27371828
chr9:117119224-117119225(-) m6A CDS//exon       24284625//27773535
chr9:117119245-117119246(-) m6A CDS//exon       24284625//27773535
chr9:117120477-117120478(-) m6A exon//intron       24209618
chr9:117122020-117122021(-) m1A CDS       26863196
chr9:117122241-117122242(-) m6A CDS       27773535//27371828
chr9:117122253-117122254(-) m6A CDS       27773535//27371828
chr9:117123997-117123998(-) m6A CDS       27773535//27371828
chr9:117124022-117124023(-) m6A CDS       27773535//27371828
chr9:117124080-117124081(-) m6A CDS       27773535//27371828
chr9:117124092-117124093(-) m6A CDS       27773535//27371828
chr9:117124123-117124124(-) m6A CDS       27773535//27371828
chr9:117124128-117124129(-) m6A CDS       27773535
chr9:117124136-117124137(-) m6A CDS       27773535
chr9:117130808-117130809(-) m6A 5'UTR//CDS       27773535
chr9:117130870-117130871(-) m6A 5'UTR//CDS       27773535
chr9:117136403-117136404(-) m6A 5'UTR//CDS       27773535
chr9:117136442-117136443(-) m6A 5'UTR//CDS       27773535
chr9:117138830-117138831(-) m6A 5'UTR//CDS       27773535//27371828
chr9:117139022-117139023(-) m6A 5'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828
chr9:117139087-117139088(-) m6A 5'UTR//CDS       24284625//24209618//28052920//27773535//27371828
chr9:117139188-117139189(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr9:117139204-117139205(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr9:117139295-117139296(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr9:117139338-117139339(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr9:117139386-117139387(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr9:117139419-117139420(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr9:117139473-117139474(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr9:117139504-117139505(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr9:117139531-117139532(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr9:117139544-117139545(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr9:117139558-117139559(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr9:117139616-117139617(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr9:117139704-117139705(-) m6A CDS       24284625//25456834//28052920//26404942//27773535//27371828//27773536
chr9:117139730-117139731(-) m6A CDS       24284625//25456834//28052920//26404942//27773535//27371828//27773536
chr9:117139790-117139791(-) m6A CDS       25456834//27773535//27371828//27773536
chr9:117143351-117143352(-) m6A CDS       25456834//27371828
chr9:117143398-117143399(-) m6A CDS       24284625//25456834//28052920//27371828
chr9:117143440-117143441(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr9:117143478-117143479(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828
chr9:117143527-117143528(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536
chr9:117143597-117143598(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536
chr9:117143694-117143695(-) m6A 5'UTR       24209618//25456834//28052920//27371828
chr9:117150174-117150175(-) m6A 5'UTR//intron       25456834//24981863//28052920//27773535//27371828
chr9:117150203-117150204(-) m6A 5'UTR//intron       25456834//24981863//28052920//27773535//27371828
chr9:117150226-117150227(-) m6A 5'UTR//intron       25456834//24981863//28052920//27773535//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
AKNA
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: AKNA

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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