Basic Information:

  VIRBase ID:  

HHID00072047

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:  MIMAT0014983          CSGALNACT2:  NR_135077     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3121-3p	CSGALNACT2
miRBase Accession/Entrez ID	MIMAT0014983	55454
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	beta4GalNAcT//ChGn-2//CHGN2//GALNACT-2//GALNACT2//PRO0082

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3121-3p	rs1006143795 chr1:180438334    T/C rs778817728 chr1:180438323    T/C rs887772082 chr1:180438327    C/T rs911596096 chr1:180438331    G/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CSGALNACT2	chr10:43669232(+) A-I      intronic chr10:43669279(+) A-I      intronic chr10:43672077(+) A-I      intronic chr10:43672078(+) A-I      intronic chr10:43672088(+) A-I      intronic chr10:43645368(+) A-I      intronic chr10:43645404(+) A-I      intronic chr10:43649926(+) A-I      intronic chr10:43649927(+) A-I      intronic chr10:43667051(+) A-I      intronic chr10:43654778(+) A-I      intronic chr10:43669242(+) A-I      intronic chr10:43678186(+) A-I      intronic chr10:43669276(+) A-I      intronic chr10:43669321(+) A-I      intronic chr10:43669334(+) A-I      intronic chr10:43669351(+) A-I      intronic chr10:43672075(+) A-I      intronic chr10:43672107(+) A-I      intronic chr10:43672113(+) A-I      intronic chr10:43672138(+) A-I      intronic chr10:43672198(+) A-I      intronic chr10:43678078(+) A-I      intronic chr10:43678089(+) A-I      intronic chr10:43678090(+) A-I      intronic chr10:43645355(+) A-I      intronic chr10:43654798(+) A-I      intronic chr10:43669353(+) A-I      intronic chr10:43672170(+) A-I      intronic chr10:43637902(+) A-I      intronic chr10:43672126(+) A-I      intronic chr10:43660184(+) A-I      intronic chr10:43636572(+) A-I      intronic chr10:43640960(+) A-I      intronic chr10:43636571(+) A-I      intronic chr10:43635521(+) A-I      intronic chr10:43636993(+) A-I      intronic chr10:43660166(+) A-I      intronic chr10:43644595(+) A-I      intronic chr10:43635575(+) A-I      intronic chr10:43636549(+) A-I      intronic chr10:43636577(+) A-I      intronic chr10:43636587(+) A-I      intronic chr10:43642084(+) A-I      intronic chr10:43642098(+) A-I      intronic chr10:43644611(+) A-I      intronic chr10:43644715(+) A-I      intronic chr10:43644796(+) A-I      intronic chr10:43644805(+) A-I      intronic chr10:43645320(+) A-I      intronic chr10:43661358(+) A-I      intronic chr10:43648662(+) A-I      intronic chr10:43663723(+) A-I      intronic chr10:43666966(+) A-I      intronic chr10:43660136(+) A-I      intronic chr10:43636636(+) A-I      intronic chr10:43636594(+) A-I      intronic chr10:43645395(+) A-I      intronic chr10:43644740(+) A-I      intronic chr10:43637832(+) A-I      intronic chr10:43636628(+) A-I      intronic chr10:43648732(+) A-I      intronic chr10:43642075(+) A-I      intronic chr10:43660174(+) A-I      intronic chr10:43672217(+) A-I      intronic chr10:43653356(+) A-I      intronic chr10:43678243(+) A-I      intronic chr10:43669265(+) A-I      intronic chr10:43666887(+) A-I      intronic chr10:43640935(+) A-I      intronic chr10:43645354(+) A-I      intronic chr10:43645436(+) A-I      intronic chr10:43669294(+) A-I      intronic chr10:43666967(+) A-I      intronic chr10:43661309(+) A-I      intronic chr10:43663743(+) A-I      intronic chr10:43635531(+) A-I      intronic chr10:43645314(+) A-I      intronic chr10:43669298(+) A-I      intronic chr10:43645330(+) A-I      intronic chr10:43672114(+) A-I      intronic chr10:43644782(+) A-I      intronic chr10:43644586(+) A-I      intronic chr10:43645360(+) A-I      intronic chr10:43644797(+) A-I      intronic chr10:43669386(+) A-I      intronic chr10:43666930(+) A-I      intronic chr10:43660135(+) A-I      intronic chr10:43645421(+) A-I      intronic chr10:43642063(+) A-I      intronic chr10:43661310(+) A-I      intronic chr10:43636578(+) A-I      intronic chr10:43666927(+) A-I      intronic chr10:43644660(+) A-I      intronic chr10:43672063(+) A-I      intronic chr10:43678174(+) A-I      intronic chr10:43645277(+) A-I      intronic chr10:43637835(+) A-I      intronic chr10:43666940(+) A-I      intronic chr10:43666901(+) A-I      intronic chr10:43663778(+) A-I      intronic chr10:43644643(+) A-I      intronic chr10:43636937(+) A-I      intronic chr10:43636645(+) A-I      intronic chr10:43654865(+) A-I      intronic chr10:43672162(+) A-I      intronic chr10:43640917(+) A-I      intronic chr10:43666611(+) A-I      intronic chr10:43663114(+) A-I      intronic chr10:43660569(+) A-I      intronic chr10:43670392(+) A-I      intronic chr10:43663055(+) A-I      intronic chr10:43666488(+) A-I      intronic chr10:43663060(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CSGALNACT2	chr10:43666611(+) A-I intron -    22327324 chr10:43663055(+) A-G intron -    22484847 chr10:43663060(+) A-G intron -    22484847 chr10:43666611(+) A-G intron -    22484847 chr10:43642075(+) A-G intron -    22484847 chr10:43660135(+) A-G intron -    22484847 chr10:43660136(+) A-G intron -    22484847 chr10:43666966(+) A-G intron -    22484847 chr10:43666967(+) A-G intron -    22484847 chr10:43669294(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CSGALNACT2	chr10:43650472-43650473(+) m6A 5'UTR       24209618//24981863//22608085 chr10:43650552-43650553(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr10:43650611-43650612(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:43650630-43650631(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:43650708-43650709(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:43650785-43650786(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:43650794-43650795(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:43650804-43650805(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:43650845-43650846(+) m6A CDS       24209618//24981863//27773535//22608085 chr10:43651010-43651011(+) m6A CDS       24981863//22608085 chr10:43651120-43651121(+) m6A CDS       22608085 chr10:43651193-43651194(+) m6A CDS       24209618//24981863//22608085 chr10:43651226-43651227(+) m6A CDS       24209618//24981863//22608085 chr10:43654202-43654203(+) m6A CDS       24981863//22608085 chr10:43654222-43654223(+) m6A CDS       24981863//22608085 chr10:43654238-43654239(+) m6A CDS       24981863 chr10:43654265-43654266(+) m6A CDS       24981863 chr10:43678786-43678787(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:43678953-43678954(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:43678966-43678967(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:43679017-43679018(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr10:43679025-43679026(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr10:43679084-43679085(+) m6A 3'UTR       24209618//24981863//22608085 chr10:43679150-43679151(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3121-3p	Exosome Plasma     23663360 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Mesenchymal stem cells     -
	CSGALNACT2	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3121-3p
Interactor2: CSGALNACT2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.