Detail Information

Basic Information:


  VIRBase ID:  

HHID00072046

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           SYNJ2BP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p SYNJ2BP
miRBase
Accession/Entrez ID		 MIMAT0014983 55333
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ARIP2//OMP25

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SYNJ2BP
chr14:70852293(-) A-I      intronic
chr14:70852294(-) A-I      intronic
chr14:70852301(-) A-I      intronic
chr14:70875730(-) A-I      intronic
chr14:70838363(-) A-I      3'UTR
chr14:70834192(-) A-I      3'UTR
chr14:70838257(-) A-I      3'UTR
chr14:70838260(-) A-I      3'UTR
chr14:70838305(-) A-I      3'UTR
chr14:70838331(-) A-I      3'UTR
chr14:70838376(-) A-I      3'UTR
chr14:70838401(-) A-I      3'UTR
chr14:70864757(-) A-I      intronic
chr14:70852291(-) A-I      intronic
chr14:70854375(-) A-I      intronic
chr14:70847162(-) A-I      intronic
chr14:70845236(-) A-I      intronic
chr14:70852179(-) A-I      intronic
chr14:70848947(-) A-I      intronic
chr14:70848841(-) A-I      intronic
chr14:70863106(-) A-I      intronic
chr14:70852317(-) A-I      intronic
chr14:70848780(-) A-I      intronic
chr14:70854526(-) A-I      intronic
chr14:70845284(-) A-I      intronic
chr14:70845252(-) A-I      intronic
chr14:70854501(-) A-I      intronic
chr14:70876593(-) A-I      intronic
chr14:70852371(-) A-I      intronic
chr14:70875851(-) A-I      intronic
chr14:70875724(-) A-I      intronic
chr14:70854465(-) A-I      intronic
chr14:70854392(-) A-I      intronic
chr14:70854546(-) A-I      intronic
chr14:70869333(-) A-I      intronic
chr14:70875780(-) A-I      intronic
chr14:70854448(-) A-I      intronic
chr14:70854384(-) A-I      intronic
chr14:70845288(-) A-I      intronic
chr14:70854436(-) A-I      intronic
chr14:70854399(-) A-I      intronic
chr14:70838144(-) A-I      3'UTR
chr14:70834235(-) A-I      3'UTR
chr14:70838371(-) A-I      3'UTR
chr14:70835925(-) A-I      3'UTR
chr14:70836005(-) A-I      3'UTR
chr14:70835948(-) A-I      3'UTR
chr14:70836017(-) A-I      3'UTR
chr14:70838318(-) A-I      3'UTR
chr14:70834179(-) A-I      3'UTR
chr14:70834051(-) A-I      3'UTR
chr14:70838198(-) A-I      3'UTR
chr14:70834197(-) A-I      3'UTR
chr14:70835910(-) A-I      3'UTR
chr14:70834217(-) A-I      3'UTR
chr14:70838354(-) A-I      3'UTR
chr14:70838390(-) A-I      3'UTR
chr14:70838330(-) A-I      3'UTR
chr14:70834109(-) A-I      3'UTR
chr14:70838329(-) A-I      3'UTR
chr14:70838268(-) A-I      3'UTR
chr14:70834227(-) A-I      3'UTR
chr14:70834157(-) A-I      3'UTR
chr14:70836058(-) A-I      3'UTR
chr14:70835891(-) A-I      3'UTR
chr14:70836014(-) A-I      3'UTR
chr14:70835930(-) A-I      3'UTR
chr14:70838368(-) A-I      3'UTR
chr14:70834277(-) A-I      3'UTR
chr14:70848901(-) A-I      intronic
chr14:70855798(-) A-I      intronic
chr14:70875865(-) A-I      intronic
chr14:70868070(-) A-I      intronic
chr14:70875683(-) A-I      intronic
chr14:70868567(-) A-I      intronic
chr14:70845315(-) A-I      intronic
chr14:70854292(-) A-I      intronic
chr14:70841916(-) A-I      intronic
chr14:70852254(-) A-I      intronic
chr14:70845300(-) A-I      intronic
chr14:70855797(-) A-I      intronic
chr14:70876723(-) A-I      intronic
chr14:70875860(-) A-I      intronic
chr14:70848764(-) A-I      intronic
chr14:70874071(-) A-I      intronic
chr14:70852202(-) A-I      intronic
chr14:70848760(-) A-I      intronic
chr14:70855719(-) A-I      intronic
chr14:70842116(-) A-I      intronic
chr14:70854367(-) A-I      intronic
chr14:70852214(-) A-I      intronic
chr14:70845298(-) A-I      intronic
chr14:70855741(-) A-I      intronic
chr14:70854542(-) A-I      intronic
chr14:70869332(-) A-I      intronic
chr14:70845281(-) A-I      intronic
chr14:70875307(-) A-I      intronic
chr14:70871599(-) A-I      intronic
chr14:70863107(-) A-I      intronic
chr14:70875689(-) A-I      intronic
chr14:70868531(-) A-I      intronic
chr14:70838197(-) A-I      3'UTR
chr14:70834099(-) A-I      3'UTR
chr14:70834130(-) A-I      3'UTR
chr14:70836006(-) A-I      3'UTR
chr14:70838324(-) A-I      3'UTR
chr14:70838273(-) A-I      3'UTR
chr14:70838192(-) A-I      3'UTR
chr14:70838274(-) A-I      3'UTR
chr14:70834222(-) A-I      3'UTR
chr14:70834232(-) A-I      3'UTR
chr14:70835974(-) A-I      3'UTR
chr14:70834055(-) A-I      3'UTR
chr14:70834196(-) A-I      3'UTR
chr14:70836024(-) A-I      3'UTR
chr14:70834113(-) A-I      3'UTR
chr14:70836004(-) A-I      3'UTR
chr14:70834253(-) A-I      3'UTR
chr14:70834122(-) A-I      3'UTR
chr14:70834059(-) A-I      3'UTR
chr14:70834087(-) A-I      3'UTR
chr14:70838202(-) A-I      3'UTR
chr14:70834116(-) A-I      3'UTR
chr14:70836071(-) A-I      3'UTR
chr14:70835958(-) A-I      3'UTR
chr14:70836039(-) A-I      3'UTR
chr14:70834155(-) A-I      3'UTR
chr14:70834167(-) A-I      3'UTR
chr14:70836027(-) A-I      3'UTR
chr14:70838937(-) A-I      3'UTR
chr14:70838264(-) A-I      3'UTR
chr14:70835982(-) A-I      3'UTR
chr14:70838159(-) A-I      3'UTR
chr14:70835987(-) A-I      3'UTR
chr14:70838369(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SYNJ2BP
chr14:70833421-70833422(-) Am 3'UTR       -
chr14:70838156-70838157(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr14:70838225-70838226(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr14:70838231-70838232(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr14:70838240-70838241(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr14:70838293-70838294(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr14:70838328-70838329(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr14:70838351-70838352(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr14:70838492-70838493(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr14:70838506-70838507(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:70838541-70838542(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:70838578-70838579(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:70838589-70838590(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr14:70838605-70838606(-) m6A 3'UTR       24284625//24981863//22608085
chr14:70838649-70838650(-) m6A 3'UTR       24284625//24981863//22608085
chr14:70838730-70838731(-) m6A 3'UTR       24284625//22608085
chr14:70838814-70838815(-) m6A 3'UTR       24284625//27773535//22608085
chr14:70838887-70838888(-) m6A 3'UTR       24284625//24981863//27773535
chr14:70838910-70838911(-) m6A 3'UTR       24981863//27773535
chr14:70838986-70838987(-) m6A 3'UTR       24981863//22608085
chr14:70839045-70839046(-) m6A 3'UTR       24981863//22608085
chr14:70839065-70839066(-) m6A 3'UTR       24981863//22608085
chr14:70839460-70839461(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839489-70839490(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839501-70839502(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839513-70839514(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839581-70839582(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839703-70839704(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839804-70839805(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839821-70839822(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr14:70839830-70839831(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr14:70842441-70842442(-) m6A CDS//exon       24284625//27773535//27371828//22608085
chr14:70842465-70842466(-) m6A CDS//exon       24284625//27773535//27371828
chr14:70842474-70842475(-) m6A CDS//exon       24284625//27773535//27371828
chr14:70883681-70883682(-) m6A 5'UTR//exon       24981863
chr14:70883774-70883775(-) m6A exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
SYNJ2BP
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: SYNJ2BP

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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