Detail Information

Basic Information:


  VIRBase ID:  

HHID00072042

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           LARS1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p LARS1
miRBase
Accession/Entrez ID		 MIMAT0014983 51520
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - hr025Cl//HSPC192//ILFS1//LARS//LEURS//LEUS//LFIS//LRS//PIG44//RNTLS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LARS1
chr5:145558415(-) A-I      intronic
chr5:145549260(-) A-I      intronic
chr5:145558069(-) A-I      intronic
chr5:145558065(-) A-I      intronic
chr5:145558055(-) A-I      intronic
chr5:145555243(-) A-I      intronic
chr5:145555242(-) A-I      intronic
chr5:145561189(-) A-I      intronic
chr5:145561572(-) A-I      intronic
chr5:145561632(-) A-I      intronic
chr5:145561640(-) A-I      intronic
chr5:145561705(-) A-I      intronic
chr5:145561754(-) A-I      intronic
chr5:145561777(-) A-I      intronic
chr5:145559384(-) A-I      intronic
chr5:145525841(-) A-I      intronic
chr5:145526556(-) A-I      intronic
chr5:145559287(-) A-I      intronic
chr5:145526480(-) A-I      intronic
chr5:145559270(-) A-I      intronic
chr5:145559343(-) A-I      intronic
chr5:145517641(-) A-I      intronic
chr5:145516155(-) A-I      intronic
chr5:145516712(-) A-I      intronic
chr5:145516742(-) A-I      intronic
chr5:145516746(-) A-I      intronic
chr5:145518045(-) A-I      intronic
chr5:145518209(-) A-I      intronic
chr5:145542501(-) A-I      intronic
chr5:145542537(-) A-I      intronic
chr5:145542623(-) A-I      intronic
chr5:145561771(-) A-I      intronic
chr5:145561707(-) A-I      intronic
chr5:145561683(-) A-I      intronic
chr5:145548026(-) A-I      intronic
chr5:145550820(-) A-I      intronic
chr5:145561675(-) A-I      intronic
chr5:145561673(-) A-I      intronic
chr5:145544712(-) A-I      intronic
chr5:145544692(-) A-I      intronic
chr5:145519180(-) A-I      intronic
chr5:145526385(-) A-I      intronic
chr5:145519194(-) A-I      intronic
chr5:145519314(-) A-I      intronic
chr5:145519621(-) A-I      intronic
chr5:145524779(-) A-I      intronic
chr5:145524849(-) A-I      intronic
chr5:145524861(-) A-I      intronic
chr5:145524864(-) A-I      intronic
chr5:145525662(-) A-I      intronic
chr5:145525817(-) A-I      intronic
chr5:145561672(-) A-I      intronic
chr5:145561658(-) A-I      intronic
chr5:145526478(-) A-I      intronic
chr5:145526470(-) A-I      intronic
chr5:145526444(-) A-I      intronic
chr5:145525804(-) A-I      intronic
chr5:145524740(-) A-I      intronic
chr5:145524698(-) A-I      intronic
chr5:145549276(-) A-I      intronic
chr5:145549300(-) A-I      intronic
chr5:145549358(-) A-I      intronic
chr5:145550421(-) A-I      intronic
chr5:145550690(-) A-I      intronic
chr5:145526936(-) A-I      intronic
chr5:145534591(-) A-I      intronic
chr5:145543076(-) A-I      intronic
chr5:145561177(-) A-I      intronic
chr5:145561141(-) A-I      intronic
chr5:145561121(-) A-I      intronic
chr5:145561116(-) A-I      intronic
chr5:145561105(-) A-I      intronic
chr5:145561079(-) A-I      intronic
chr5:145561077(-) A-I      intronic
chr5:145559398(-) A-I      intronic
chr5:145559385(-) A-I      intronic
chr5:145559382(-) A-I      intronic
chr5:145550754(-) A-I      intronic
chr5:145559301(-) A-I      intronic
chr5:145492829(-) A-I      3'UTR
chr5:145492831(-) A-I      3'UTR
chr5:145492860(-) A-I      3'UTR
chr5:145492877(-) A-I      3'UTR
chr5:145492878(-) A-I      3'UTR
chr5:145492899(-) A-I      3'UTR
chr5:145492724(-) A-I      3'UTR
chr5:145492772(-) A-I      3'UTR
chr5:145492900(-) A-I      3'UTR
chr5:145492765(-) A-I      3'UTR
chr5:145492739(-) A-I      3'UTR
chr5:145492733(-) A-I      3'UTR
chr5:145492784(-) A-I      3'UTR
chr5:145492766(-) A-I      3'UTR
chr5:145492795(-) A-I      3'UTR
chr5:145492801(-) A-I      3'UTR
chr5:145492821(-) A-I      3'UTR
chr5:145492908(-) A-I      3'UTR
chr5:145492704(-) A-I      3'UTR
chr5:145492760(-) A-I      3'UTR
chr5:145526382(-) A-I      intronic
chr5:145525779(-) A-I      intronic
chr5:145525795(-) A-I      intronic
chr5:145526374(-) A-I      intronic
chr5:145516182(-) A-I      intronic
chr5:145548084(-) A-I      intronic
chr5:145530316(-) A-I      intronic
chr5:145518784(-) A-I      intronic
chr5:145526913(-) A-I      intronic
chr5:145518823(-) A-I      intronic
chr5:145544775(-) A-I      intronic
chr5:145516550(-) A-I      intronic
chr5:145525759(-) A-I      intronic
chr5:145561682(-) A-I      intronic
chr5:145516649(-) A-I      intronic
chr5:145519620(-) A-I      intronic
chr5:145516598(-) A-I      intronic
chr5:145526331(-) A-I      intronic
chr5:145516597(-) A-I      intronic
chr5:145561059(-) A-I      intronic
chr5:145559421(-) A-I      intronic
chr5:145519316(-) A-I      intronic
chr5:145524771(-) A-I      intronic
chr5:145525755(-) A-I      intronic
chr5:145526943(-) A-I      intronic
chr5:145524678(-) A-I      intronic
chr5:145534526(-) A-I      intronic
chr5:145542513(-) A-I      intronic
chr5:145524933(-) A-I      intronic
chr5:145521585(-) A-I      intronic
chr5:145524704(-) A-I      intronic
chr5:145526362(-) A-I      intronic
chr5:145525738(-) A-I      intronic
chr5:145560853(-) A-I      intronic
chr5:145516073(-) A-I      intronic
chr5:145524916(-) A-I      intronic
chr5:145561686(-) A-I      intronic
chr5:145518806(-) A-I      intronic
chr5:145516173(-) A-I      intronic
chr5:145525721(-) A-I      intronic
chr5:145559278(-) A-I      intronic
chr5:145516052(-) A-I      intronic
chr5:145560804(-) A-I      intronic
chr5:145548206(-) A-I      intronic
chr5:145534688(-) A-I      intronic
chr5:145558538(-) A-I      intronic
chr5:145525671(-) A-I      intronic
chr5:145542609(-) A-I      intronic
chr5:145526547(-) A-I      intronic
chr5:145558632(-) A-I      intronic
chr5:145561677(-) A-I      intronic
chr5:145561004(-) A-I      intronic
chr5:145542588(-) A-I      intronic
chr5:145525821(-) A-I      intronic
chr5:145492792(-) A-I      3'UTR
chr5:145526450(-) A-I      intronic
chr5:145516543(-) A-I      intronic
chr5:145560815(-) A-I      intronic
chr5:145525851(-) A-I      intronic
chr5:145524717(-) A-I      intronic
chr5:145550857(-) A-I      intronic
chr5:145561668(-) A-I      intronic
chr5:145526880(-) A-I      intronic
chr5:145559757(-) A-I      intronic
chr5:145561181(-) A-I      intronic
chr5:145526515(-) A-I      intronic
chr5:145561681(-) A-I      intronic
chr5:145514349(-) A-I      intronic
chr5:145558610(-) A-I      intronic
chr5:145524925(-) A-I      intronic
chr5:145530037(-) A-I      intronic
chr5:145542992(-) A-I      intronic
chr5:145558665(-) A-I      intronic
chr5:145524795(-) A-I      intronic
chr5:145517516(-) A-I      intronic
chr5:145558869(-) A-I      intronic
chr5:145553801(-) A-I      intronic
chr5:145517504(-) A-I      intronic
chr5:145524911(-) A-I      intronic
chr5:145519271(-) A-I      intronic
chr5:145524825(-) A-I      intronic
chr5:145525741(-) A-I      intronic
chr5:145524924(-) A-I      intronic
chr5:145516183(-) A-I      intronic
chr5:145526476(-) A-I      intronic
chr5:145524742(-) A-I      intronic
chr5:145526453(-) A-I      intronic
chr5:145517518(-) A-I      intronic
chr5:145548217(-) A-I      intronic
chr5:145525684(-) A-I      intronic
chr5:145518118(-) A-I      intronic
chr5:145524875(-) A-I      intronic
chr5:145561068(-) A-I      intronic
chr5:145561133(-) A-I      intronic
chr5:145526961(-) A-I      intronic
chr5:145524709(-) A-I      intronic
chr5:145561615(-) A-I      intronic
chr5:145549294(-) A-I      intronic
chr5:145516624(-) A-I      intronic
chr5:145542566(-) A-I      intronic
chr5:145519266(-) A-I      intronic
chr5:145550858(-) A-I      intronic
chr5:145559334(-) A-I      intronic
chr5:145558769(-) A-I      intronic
chr5:145561092(-) A-I      intronic
chr5:145525796(-) A-I      intronic
chr5:145526353(-) A-I      intronic
chr5:145542493(-) A-I      intronic
chr5:145549250(-) A-I      intronic
chr5:145559779(-) A-I      intronic
chr5:145526957(-) A-I      intronic
chr5:145541035(-) A-I      intronic
chr5:145548148(-) A-I      intronic
chr5:145525792(-) A-I      intronic
chr5:145513572(-) A-I      intronic
chr5:145519182(-) A-I      intronic
chr5:145561053(-) A-I      intronic
chr5:145525747(-) A-I      intronic
chr5:145517570(-) A-I      intronic
chr5:145524733(-) A-I      intronic
chr5:145560840(-) A-I      intronic
chr5:145550728(-) A-I      intronic
chr5:145526495(-) A-I      intronic
chr5:145526564(-) A-I      intronic
chr5:145525846(-) A-I      intronic
chr5:145526459(-) A-I      intronic
chr5:145558011(-) A-I      intronic
chr5:145559985(-) A-I      intronic
chr5:145526548(-) A-I      intronic
chr5:145560660(-) A-I      intronic
chr5:145542984(-) A-I      intronic
chr5:145525781(-) A-I      intronic
chr5:145560996(-) A-I      intronic
chr5:145542511(-) A-I      intronic
chr5:145542487(-) A-I      intronic
chr5:145517621(-) A-I      intronic
chr5:145518124(-) A-I      intronic
chr5:145559321(-) A-I      intronic
chr5:145524748(-) A-I      intronic
chr5:145524811(-) A-I      intronic
chr5:145524823(-) A-I      intronic
chr5:145526373(-) A-I      intronic
chr5:145559335(-) A-I      intronic
chr5:145560995(-) A-I      intronic
chr5:145561776(-) A-I      intronic
chr5:145560757(-) A-I      intronic
chr5:145548087(-) A-I      intronic
chr5:145519268(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
LARS1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: LARS1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...