Detail Information

Basic Information:


  VIRBase ID:  

HHID00072040

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           DNTTIP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p DNTTIP2
miRBase
Accession/Entrez ID		 MIMAT0014983 30836
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ERBP//FCF2//HSU15552//LPTS-RP2//TdIF2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DNTTIP2
chr1:94339319(-) A-I      intronic
chr1:94340291(-) A-I      intronic
chr1:94340306(-) A-I      intronic
chr1:94340317(-) A-I      intronic
chr1:94340325(-) A-I      intronic
chr1:94340323(-) A-I      intronic
chr1:94339291(-) A-I      intronic
chr1:94339305(-) A-I      intronic
chr1:94343667(-) A-I      intronic
chr1:94340336(-) A-I      intronic
chr1:94340340(-) A-I      intronic
chr1:94339229(-) A-I      intronic
chr1:94340277(-) A-I      intronic
chr1:94338890(-) A-I      intronic
chr1:94341602(-) A-I      intronic
chr1:94340283(-) A-I      intronic
chr1:94339300(-) A-I      intronic
chr1:94341623(-) A-I      intronic
chr1:94339270(-) A-I      intronic
chr1:94338899(-) A-I      intronic
chr1:94339271(-) A-I      intronic
chr1:94338896(-) A-I      intronic
chr1:94339151(-) A-I      intronic
chr1:94340322(-) A-I      intronic
chr1:94339106(-) A-I      intronic
chr1:94339231(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DNTTIP2
chr1:94339190(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DNTTIP2
chr1:94335034-94335035(-) m6A 3'UTR       27773535
chr1:94335062-94335063(-) m6A 3'UTR       27773535
chr1:94335201-94335202(-) m6A 3'UTR       27773535
chr1:94335217-94335218(-) m6A 3'UTR       27773535
chr1:94335306-94335307(-) m6A 3'UTR       27773535//22608085
chr1:94335339-94335340(-) m6A 3'UTR//exon       27773535//22608085
chr1:94335391-94335392(-) m6A 3'UTR//exon       24981863//27773535//27371828//22608085
chr1:94336264-94336265(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr1:94336278-94336279(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr1:94336341-94336342(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr1:94336532-94336533(-) m6A exon//intron       24284625//27773535
chr1:94336544-94336545(-) m6A exon//intron       24284625//24981863//27773535//22608085
chr1:94337682-94337683(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828//22608085
chr1:94337726-94337727(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828//22608085
chr1:94337776-94337777(-) m6A CDS//exon       24981863//27773535//27371828//22608085
chr1:94338729-94338730(-) m6A CDS//exon       24981863//27773535//27371828//22608085
chr1:94338790-94338791(-) m6A exon//intron       24981863//27773535
chr1:94338820-94338821(-) m6A exon//intron       24981863//27773535
chr1:94338831-94338832(-) m6A exon//intron       24981863//27773535
chr1:94338847-94338848(-) m6A exon//intron       24981863//27773535
chr1:94341226-94341227(-) Cm CDS//exon//intron       -
chr1:94341235-94341236(-) m6A CDS//exon//intron       24981863//27773535
chr1:94341254-94341255(-) m6A CDS//exon//intron       24981863//27773535
chr1:94341312-94341313(-) m6A CDS//exon//intron       24981863//27773535
chr1:94341825-94341826(-) m6A CDS//exon       24981863//27773535
chr1:94341850-94341851(-) m6A CDS//exon       24981863//27773535
chr1:94341889-94341890(-) m6A CDS//exon       24981863//27773535//22608085
chr1:94341964-94341965(-) m6A CDS//exon       24981863//27773535//22575960//22608085
chr1:94342057-94342058(-) m6A CDS//exon       24981863//27773535//22608085
chr1:94342126-94342127(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr1:94342215-94342216(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:94342252-94342253(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:94342258-94342259(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:94342394-94342395(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:94342426-94342427(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr1:94342476-94342477(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr1:94342507-94342508(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:94342515-94342516(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:94342611-94342612(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:94342616-94342617(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:94342644-94342645(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:94342764-94342765(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:94342809-94342810(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:94342850-94342851(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:94342883-94342884(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr1:94342915-94342916(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr1:94342928-94342929(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr1:94343012-94343013(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr1:94343231-94343232(-) m6A CDS//exon//intron       24284625//24981863//26404942//22575960//22608085
chr1:94343250-94343251(-) m6A CDS//exon//intron       24284625//24981863//26404942//22575960//22608085
chr1:94343255-94343256(-) m6A CDS//exon//intron       24284625//24981863//26404942//22575960//22608085
chr1:94343279-94343280(-) m6A CDS//exon//intron       24284625//24981863//26404942//22575960//22608085
chr1:94343298-94343299(-) Tm CDS//exon//intron       -
chr1:94343309-94343310(-) m6A CDS//exon//intron       24284625//24981863//26404942//27371828//27773536//22575960//22608085
chr1:94343339-94343340(-) m6A CDS//exon//intron       24284625//24981863//26404942//27371828//27773536//22608085
chr1:94343357-94343358(-) m6A CDS//exon//intron       24284625//24981863//27371828//27773536//22608085
chr1:94345276-94345277(-) m6A exon       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
DNTTIP2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: DNTTIP2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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