Detail Information

Basic Information:


  VIRBase ID:  

HHID00072036

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           ZC3H7A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p ZC3H7A
miRBase
Accession/Entrez ID		 MIMAT0014983 29066
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HSPC055//ZC3H7//ZC3HDC7

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZC3H7A
chr16:11866732(-) A-I      intronic
chr16:11866793(-) A-I      intronic
chr16:11887154(-) A-I      intronic
chr16:11863754(-) A-I      intronic
chr16:11863778(-) A-I      intronic
chr16:11863811(-) A-I      intronic
chr16:11881020(-) A-I      intronic
chr16:11881030(-) A-I      intronic
chr16:11872207(-) A-I      intronic
chr16:11872271(-) A-I      intronic
chr16:11872685(-) A-I      intronic
chr16:11878598(-) A-I      intronic
chr16:11878668(-) A-I      intronic
chr16:11878902(-) A-I      intronic
chr16:11878970(-) A-I      intronic
chr16:11879604(-) A-I      intronic
chr16:11879614(-) A-I      intronic
chr16:11879656(-) A-I      intronic
chr16:11879671(-) A-I      intronic
chr16:11880921(-) A-I      intronic
chr16:11881026(-) A-I      intronic
chr16:11881559(-) A-I      intronic
chr16:11882532(-) A-I      intronic
chr16:11882614(-) A-I      intronic
chr16:11887220(-) A-I      intronic
chr16:11887206(-) A-I      intronic
chr16:11884613(-) A-I      intronic
chr16:11884592(-) A-I      intronic
chr16:11884534(-) A-I      intronic
chr16:11882649(-) A-I      intronic
chr16:11882652(-) A-I      intronic
chr16:11884507(-) A-I      intronic
chr16:11884505(-) A-I      intronic
chr16:11883243(-) A-I      intronic
chr16:11883303(-) A-I      intronic
chr16:11883326(-) A-I      intronic
chr16:11883360(-) A-I      intronic
chr16:11883361(-) A-I      intronic
chr16:11883720(-) A-I      intronic
chr16:11847676(-) A-I      intronic
chr16:11847637(-) A-I      intronic
chr16:11847601(-) A-I      intronic
chr16:11865883(-) A-I      intronic
chr16:11847355(-) A-I      intronic
chr16:11881407(-) A-I      intronic
chr16:11866691(-) A-I      intronic
chr16:11847552(-) A-I      intronic
chr16:11871753(-) A-I      intronic
chr16:11871641(-) A-I      intronic
chr16:11884846(-) A-I      intronic
chr16:11883813(-) A-I      intronic
chr16:11884492(-) A-I      intronic
chr16:11871631(-) A-I      intronic
chr16:11871619(-) A-I      intronic
chr16:11867479(-) A-I      intronic
chr16:11866826(-) A-I      intronic
chr16:11866811(-) A-I      intronic
chr16:11863899(-) A-I      intronic
chr16:11887385(-) A-I      intronic
chr16:11889896(-) A-I      intronic
chr16:11866663(-) A-I      intronic
chr16:11866655(-) A-I      intronic
chr16:11866624(-) A-I      intronic
chr16:11866045(-) A-I      intronic
chr16:11865975(-) A-I      intronic
chr16:11865968(-) A-I      intronic
chr16:11865886(-) A-I      intronic
chr16:11866690(-) A-I      intronic
chr16:11865869(-) A-I      intronic
chr16:11863836(-) A-I      intronic
chr16:11863823(-) A-I      intronic
chr16:11863807(-) A-I      intronic
chr16:11863675(-) A-I      intronic
chr16:11858456(-) A-I      intronic
chr16:11858454(-) A-I      intronic
chr16:11858323(-) A-I      intronic
chr16:11858293(-) A-I      intronic
chr16:11858286(-) A-I      intronic
chr16:11858283(-) A-I      intronic
chr16:11857134(-) A-I      intronic
chr16:11848110(-) A-I      intronic
chr16:11847773(-) A-I      intronic
chr16:11863359(-) A-I      intronic
chr16:11857824(-) A-I      intronic
chr16:11858086(-) A-I      intronic
chr16:11879240(-) A-I      intronic
chr16:11872708(-) A-I      intronic
chr16:11857876(-) A-I      intronic
chr16:11881718(-) A-I      intronic
chr16:11885836(-) A-I      intronic
chr16:11881036(-) A-I      intronic
chr16:11881375(-) A-I      intronic
chr16:11848053(-) A-I      intronic
chr16:11849003(-) A-I      intronic
chr16:11865494(-) A-I      intronic
chr16:11882607(-) A-I      intronic
chr16:11858222(-) A-I      intronic
chr16:11879747(-) A-I      intronic
chr16:11847547(-) A-I      intronic
chr16:11881121(-) A-I      intronic
chr16:11865930(-) A-I      intronic
chr16:11848709(-) A-I      intronic
chr16:11882576(-) A-I      intronic
chr16:11880999(-) A-I      intronic
chr16:11883222(-) A-I      intronic
chr16:11889429(-) A-I      intronic
chr16:11881042(-) A-I      intronic
chr16:11857092(-) A-I      intronic
chr16:11863838(-) A-I      intronic
chr16:11847681(-) A-I      intronic
chr16:11863467(-) A-I      intronic
chr16:11885902(-) A-I      intronic
chr16:11848984(-) A-I      intronic
chr16:11883216(-) A-I      intronic
chr16:11858353(-) A-I      intronic
chr16:11858025(-) A-I      intronic
chr16:11863844(-) A-I      intronic
chr16:11865552(-) A-I      intronic
chr16:11887224(-) A-I      intronic
chr16:11865646(-) A-I      intronic
chr16:11883328(-) A-I      intronic
chr16:11881393(-) A-I      intronic
chr16:11884471(-) A-I      intronic
chr16:11881401(-) A-I      intronic
chr16:11865629(-) A-I      intronic
chr16:11858502(-) A-I      intronic
chr16:11889864(-) A-I      intronic
chr16:11858132(-) A-I      intronic
chr16:11847779(-) A-I      intronic
chr16:11847778(-) A-I      intronic
chr16:11863319(-) A-I      intronic
chr16:11858398(-) A-I      intronic
chr16:11848666(-) A-I      intronic
chr16:11858450(-) A-I      intronic
chr16:11866650(-) A-I      intronic
chr16:11866717(-) A-I      intronic
chr16:11889888(-) A-I      intronic
chr16:11857018(-) A-I      intronic
chr16:11883719(-) A-I      intronic
chr16:11847669(-) A-I      intronic
chr16:11883249(-) A-I      intronic
chr16:11866730(-) A-I      intronic
chr16:11884922(-) A-I      intronic
chr16:11863372(-) A-I      intronic
chr16:11883284(-) A-I      intronic
chr16:11865951(-) A-I      intronic
chr16:11858233(-) A-I      intronic
chr16:11863799(-) A-I      intronic
chr16:11847982(-) A-I      intronic
chr16:11882524(-) A-I      intronic
chr16:11879680(-) A-I      intronic
chr16:11865489(-) A-I      intronic
chr16:11846034(-) A-I      intronic
chr16:11863384(-) A-I      intronic
chr16:11863484(-) A-I      intronic
chr16:11858012(-) A-I      intronic
chr16:11882602(-) A-I      intronic
chr16:11883922(-) A-I      intronic
chr16:11863915(-) A-I      intronic
chr16:11879302(-) A-I      intronic
chr16:11848954(-) A-I      intronic
chr16:11845834(-) A-I      intronic
chr16:11858024(-) A-I      intronic
chr16:11863679(-) A-I      intronic
chr16:11883780(-) A-I      intronic
chr16:11847688(-) A-I      intronic
chr16:11865205(-) A-I      intronic
chr16:11889861(-) A-I      intronic
chr16:11886015(-) A-I      intronic
chr16:11863678(-) A-I      intronic
chr16:11863743(-) A-I      intronic
chr16:11863856(-) A-I      intronic
chr16:11872733(-) A-I      intronic
chr16:11849853(-) A-I      intronic
chr16:11848983(-) A-I      intronic
chr16:11866762(-) A-I      intronic
chr16:11887260(-) A-I      intronic
chr16:11881046(-) A-I      intronic
chr16:11858010(-) A-I      intronic
chr16:11871543(-) A-I      intronic
chr16:11857788(-) A-I      intronic
chr16:11879250(-) A-I      intronic
chr16:11881106(-) A-I      intronic
chr16:11847358(-) A-I      intronic
chr16:11887143(-) A-I      intronic
chr16:11863774(-) A-I      intronic
chr16:11866820(-) A-I      intronic
chr16:11858289(-) A-I      intronic
chr16:11847684(-) A-I      intronic
chr16:11863455(-) A-I      intronic
chr16:11874054(-) A-I      intronic
chr16:11884573(-) A-I      intronic
chr16:11857922(-) A-I      intronic
chr16:11872127(-) A-I      intronic
chr16:11845829(-) A-I      intronic
chr16:11863738(-) A-I      intronic
chr16:11883271(-) A-I      intronic
chr16:11884651(-) A-I      intronic
chr16:11883825(-) A-I      intronic
chr16:11847642(-) A-I      intronic
chr16:11881072(-) A-I      intronic
chr16:11865122(-) A-I      intronic
chr16:11863837(-) A-I      intronic
chr16:11879006(-) A-I      intronic
chr16:11889825(-) A-I      intronic
chr16:11884723(-) A-I      intronic
chr16:11865560(-) A-I      intronic
chr16:11881380(-) A-I      intronic
chr16:11883199(-) A-I      intronic
chr16:11858322(-) A-I      intronic
chr16:11872743(-) A-I      intronic
chr16:11858556(-) A-I      intronic
chr16:11882537(-) A-I      intronic
chr16:11847546(-) A-I      intronic
chr16:11865495(-) A-I      intronic
chr16:11865521(-) A-I      intronic
chr16:11848112(-) A-I      intronic
chr16:11857099(-) A-I      intronic
chr16:11887337(-) A-I      intronic
chr16:11884533(-) A-I      intronic
chr16:11882464(-) A-I      intronic
chr16:11858466(-) A-I      intronic
chr16:11883275(-) A-I      intronic
chr16:11857792(-) A-I      intronic
chr16:11848032(-) A-I      intronic
chr16:11847685(-) A-I      intronic
chr16:11889817(-) A-I      intronic
chr16:11867574(-) A-I      intronic
chr16:11881442(-) A-I      intronic
chr16:11858328(-) A-I      intronic
chr16:11865539(-) A-I      intronic
chr16:11885918(-) A-I      intronic
chr16:11872734(-) A-I      intronic
chr16:11865935(-) A-I      intronic
chr16:11883248(-) A-I      intronic
chr16:11883850(-) A-I      intronic
chr16:11857855(-) A-I      intronic
chr16:11858358(-) A-I      intronic
chr16:11858097(-) A-I      intronic
chr16:11883147(-) A-I      intronic
chr16:11857798(-) A-I      intronic
chr16:11848104(-) A-I      intronic
chr16:11863893(-) A-I      intronic
chr16:11883771(-) A-I      intronic
chr16:11848036(-) A-I      intronic
chr16:11847603(-) A-I      intronic
chr16:11863316(-) A-I      intronic
chr16:11848665(-) A-I      intronic
chr16:11867591(-) A-I      intronic
chr16:11857032(-) A-I      intronic
chr16:11866819(-) A-I      intronic
chr16:11857791(-) A-I      intronic
chr16:11857732(-) A-I      intronic
chr16:11858242(-) A-I      intronic
chr16:11881456(-) A-I      intronic
chr16:11883203(-) A-I      intronic
chr16:11887267(-) A-I      intronic
chr16:11847352(-) A-I      intronic
chr16:11883903(-) A-I      intronic
chr16:11881763(-) A-I      intronic
chr16:11865161(-) A-I      intronic
chr16:11882634(-) A-I      intronic
chr16:11879756(-) A-I      intronic
chr16:11884847(-) A-I      intronic
chr16:11882801(-) A-I      intronic
chr16:11883155(-) A-I      intronic
chr16:11867189(-) A-I      intronic
chr16:11883854(-) A-I      intronic
chr16:11857062(-) A-I      intronic
chr16:11879552(-) A-I      intronic
chr16:11847435(-) A-I      intronic
chr16:11857925(-) A-I      intronic
chr16:11865064(-) A-I      intronic
chr16:11847602(-) A-I      intronic
chr16:11847412(-) A-I      intronic
chr16:11848066(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZC3H7A
chr16:11863743(-) A-I intron -    22327324
chr16:11881042(-) A-I intron -    22327324
chr16:11881380(-) A-I intron -    22327324
chr16:11881442(-) A-I intron -    22327324
chr16:11883719(-) A-I intron -    22327324
chr16:11884922(-) A-I intron -    22327324
chr16:11847642(-) A-G intron -    22484847
chr16:11857062(-) A-G intron -    22484847
chr16:11857092(-) A-G intron -    22484847
chr16:11857099(-) A-G intron -    22484847
chr16:11858222(-) A-G intron -    22484847
chr16:11863467(-) A-G intron -    22484847
chr16:11863738(-) A-G intron -    22484847
chr16:11863743(-) A-G intron -    22484847
chr16:11881442(-) A-G intron -    22484847
chr16:11882537(-) A-G intron -    22484847
chr16:11883155(-) A-G intron -    22484847
chr16:11883216(-) A-G intron -    22484847
chr16:11883222(-) A-G intron -    22484847
chr16:11885902(-) A-G intron -    22484847
chr16:11889825(-) A-G intron -    22484847
chr16:11889888(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZC3H7A
chr16:11844495-11844496(-) Y 3'UTR//exon       26075521
chr16:11844883-11844884(-) m6A 3'UTR//exon       27773535//27371828
chr16:11844934-11844935(-) m6A 3'UTR//exon       27773535//27371828
chr16:11844985-11844986(-) m6A 3'UTR//exon       24284625//27773535
chr16:11845176-11845177(-) m6A 3'UTR//CDS//exon       24981863//22608085
chr16:11845301-11845302(-) m6A 3'UTR//CDS//exon       24284625//24981863//22608085
chr16:11845332-11845333(-) m6A 3'UTR//CDS//exon       24284625//24981863
chr16:11850128-11850129(-) m6A 3'UTR//CDS       24981863
chr16:11850144-11850145(-) m6A 3'UTR//CDS       24981863
chr16:11850162-11850163(-) m6A 3'UTR//CDS       24981863
chr16:11850200-11850201(-) m6A 3'UTR//CDS//exon       24981863
chr16:11852307-11852308(-) m6A 3'UTR//5'UTR//CDS//exon       24981863
chr16:11852348-11852349(-) m6A 5'UTR//CDS//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
ZC3H7A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: ZC3H7A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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