Detail Information

Basic Information:


  VIRBase ID:  

HHID00072034

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           COQ2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p COQ2
miRBase
Accession/Entrez ID		 MIMAT0014983 27235
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CL640//COQ10D1//MSA1//PHB:PPT

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR COQ2
chr4:84187060(-) A-I      intronic
chr4:84186844(-) A-I      intronic
chr4:84187704(-) A-I      intronic
chr4:84186997(-) A-I      intronic
chr4:84187649(-) A-I      intronic
chr4:84186988(-) A-I      intronic
chr4:84185704(-) A-I      intronic
chr4:84185779(-) A-I      intronic
chr4:84186601(-) A-I      intronic
chr4:84186642(-) A-I      intronic
chr4:84186726(-) A-I      intronic
chr4:84186962(-) A-I      intronic
chr4:84187541(-) A-I      intronic
chr4:84186929(-) A-I      intronic
chr4:84186625(-) A-I      intronic
chr4:84186946(-) A-I      intronic
chr4:84186603(-) A-I      intronic
chr4:84186695(-) A-I      intronic
chr4:84187687(-) A-I      intronic
chr4:84185721(-) A-I      intronic
chr4:84187690(-) A-I      intronic
chr4:84187090(-) A-I      intronic
chr4:84185787(-) A-I      intronic
chr4:84186450(-) A-I      intronic
chr4:84186553(-) A-I      intronic
chr4:84185678(-) A-I      intronic
chr4:84185668(-) A-I      intronic
chr4:84187578(-) A-I      intronic
chr4:84195125(-) A-I      intronic
chr4:84187648(-) A-I      intronic
chr4:84188444(-) A-I      intronic
chr4:84186568(-) A-I      intronic
chr4:84186956(-) A-I      intronic
chr4:84186895(-) A-I      intronic
chr4:84188435(-) A-I      intronic
chr4:84187675(-) A-I      intronic
chr4:84186955(-) A-I      intronic
chr4:84186488(-) A-I      intronic
chr4:84186893(-) A-I      intronic
chr4:84186996(-) A-I      intronic
chr4:84186557(-) A-I      intronic
chr4:84186849(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED COQ2
chr4:84185399(-) A-I exon CDS    19478186
chr4:84186488(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase COQ2
chr4:84183778-84183779(-) m6A 3'UTR       27773535
chr4:84185014-84185015(-) m6A 3'UTR//intron       27773535
chr4:84185255-84185256(-) m6A 3'UTR//intron       27773535
chr4:84185321-84185322(-) m6A 3'UTR//intron       27773535
chr4:84185386-84185387(-) m6A 3'UTR//CDS//intron       27773535
chr4:84185395-84185396(-) m6A 3'UTR//CDS//intron       27773535
chr4:84185447-84185448(-) m6A 3'UTR//CDS//intron       27773535
chr4:84185455-84185456(-) m6A 3'UTR//CDS//intron       27773535
chr4:84185492-84185493(-) m6A 3'UTR//CDS//intron       27773535
chr4:84185502-84185503(-) m6A 3'UTR//CDS//intron       27773535
chr4:84187854-84187855(-) m6A 3'UTR//intron       27773535
chr4:84187896-84187897(-) m6A 3'UTR//intron       27773535
chr4:84205723-84205724(-) m6A CDS       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
COQ2
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: COQ2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...