Detail Information

Basic Information:


  VIRBase ID:  

HHID00072024

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           HNRNPA0:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p HNRNPA0
miRBase
Accession/Entrez ID		 MIMAT0014983 10949
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HNRPA0

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HNRNPA0
chr5:137087353-137087354(-) m6A 3'UTR       27773535
chr5:137087484-137087485(-) m6A 3'UTR       27773535
chr5:137087536-137087537(-) m6A 3'UTR       27773535
chr5:137087687-137087688(-) m6A 3'UTR       24981863//27773535//22608085
chr5:137087698-137087699(-) m6A 3'UTR       24981863//27773535//22608085
chr5:137087713-137087714(-) m6A 3'UTR       24981863//27773535//22608085
chr5:137087789-137087790(-) m6A 3'UTR       24981863//27773535//22608085
chr5:137087932-137087933(-) Y 3'UTR       25219674
chr5:137088429-137088430(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr5:137088475-137088476(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr5:137088496-137088497(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr5:137088567-137088568(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr5:137088592-137088593(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr5:137088635-137088636(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr5:137088891-137088892(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr5:137089141-137089142(-) m6A CDS       24284625//24209618//24981863//27773536//22575960
chr5:137089297-137089298(-) m6A CDS       24284625//24209618//24981863//26404942//27773536//22575960//22608085
chr5:137089625-137089626(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:137089651-137089652(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:137089661-137089662(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr5:137089797-137089798(-) m6A 5'UTR       24284625//24209618//24981863//27773535//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
HNRNPA0
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: HNRNPA0

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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