Detail Information

Basic Information:


  VIRBase ID:  

HHID00072018

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           BCL7B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p BCL7B
miRBase
Accession/Entrez ID		 MIMAT0014983 9275
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BCL7B
chr7:72967814(-) A-I      intronic
chr7:72967836(-) A-I      intronic
chr7:72967839(-) A-I      intronic
chr7:72967845(-) A-I      intronic
chr7:72967855(-) A-I      intronic
chr7:72967920(-) A-I      intronic
chr7:72967956(-) A-I      intronic
chr7:72967957(-) A-I      intronic
chr7:72968481(-) A-I      intronic
chr7:72968505(-) A-I      intronic
chr7:72968511(-) A-I      intronic
chr7:72968512(-) A-I      intronic
chr7:72968566(-) A-I      intronic
chr7:72969493(-) A-I      intronic
chr7:72969557(-) A-I      intronic
chr7:72969597(-) A-I      intronic
chr7:72969650(-) A-I      intronic
chr7:72970168(-) A-I      intronic
chr7:72966316(-) A-I      intronic
chr7:72952977(-) A-I      intronic
chr7:72953056(-) A-I      intronic
chr7:72953061(-) A-I      intronic
chr7:72953110(-) A-I      intronic
chr7:72953388(-) A-I      intronic
chr7:72953483(-) A-I      intronic
chr7:72953503(-) A-I      intronic
chr7:72953644(-) A-I      intronic
chr7:72953710(-) A-I      intronic
chr7:72953720(-) A-I      intronic
chr7:72953800(-) A-I      intronic
chr7:72953819(-) A-I      intronic
chr7:72953827(-) A-I      intronic
chr7:72955002(-) A-I      intronic
chr7:72955078(-) A-I      intronic
chr7:72955113(-) A-I      intronic
chr7:72955122(-) A-I      intronic
chr7:72955425(-) A-I      intronic
chr7:72955858(-) A-I      intronic
chr7:72955870(-) A-I      intronic
chr7:72955890(-) A-I      intronic
chr7:72955900(-) A-I      intronic
chr7:72958844(-) A-I      intronic
chr7:72958856(-) A-I      intronic
chr7:72958880(-) A-I      intronic
chr7:72959573(-) A-I      intronic
chr7:72959654(-) A-I      intronic
chr7:72959681(-) A-I      intronic
chr7:72959694(-) A-I      intronic
chr7:72959699(-) A-I      intronic
chr7:72959707(-) A-I      intronic
chr7:72959710(-) A-I      intronic
chr7:72959721(-) A-I      intronic
chr7:72959769(-) A-I      intronic
chr7:72959772(-) A-I      intronic
chr7:72960380(-) A-I      intronic
chr7:72960870(-) A-I      intronic
chr7:72960936(-) A-I      intronic
chr7:72962610(-) A-I      intronic
chr7:72962658(-) A-I      intronic
chr7:72962722(-) A-I      intronic
chr7:72964673(-) A-I      intronic
chr7:72964763(-) A-I      intronic
chr7:72964799(-) A-I      intronic
chr7:72964815(-) A-I      intronic
chr7:72964829(-) A-I      intronic
chr7:72965116(-) A-I      intronic
chr7:72965120(-) A-I      intronic
chr7:72965126(-) A-I      intronic
chr7:72965698(-) A-I      intronic
chr7:72965715(-) A-I      intronic
chr7:72965735(-) A-I      intronic
chr7:72965746(-) A-I      intronic
chr7:72965835(-) A-I      intronic
chr7:72966296(-) A-I      intronic
chr7:72966302(-) A-I      intronic
chr7:72966366(-) A-I      intronic
chr7:72966891(-) A-I      intronic
chr7:72967028(-) A-I      intronic
chr7:72967426(-) A-I      intronic
chr7:72967433(-) A-I      intronic
chr7:72952979(-) A-I      intronic
chr7:72966767(-) A-I      intronic
chr7:72959824(-) A-I      intronic
chr7:72955365(-) A-I      intronic
chr7:72957787(-) A-I      intronic
chr7:72957686(-) A-I      intronic
chr7:72955084(-) A-I      intronic
chr7:72969645(-) A-I      intronic
chr7:72953019(-) A-I      intronic
chr7:72963160(-) A-I      intronic
chr7:72953854(-) A-I      intronic
chr7:72968468(-) A-I      intronic
chr7:72968971(-) A-I      intronic
chr7:72957579(-) A-I      intronic
chr7:72957184(-) A-I      intronic
chr7:72953751(-) A-I      intronic
chr7:72960812(-) A-I      intronic
chr7:72953693(-) A-I      intronic
chr7:72955355(-) A-I      intronic
chr7:72955311(-) A-I      intronic
chr7:72959720(-) A-I      intronic
chr7:72969693(-) A-I      intronic
chr7:72954904(-) A-I      intronic
chr7:72959294(-) A-I      intronic
chr7:72955936(-) A-I      intronic
chr7:72955930(-) A-I      intronic
chr7:72952887(-) A-I      intronic
chr7:72954916(-) A-I      intronic
chr7:72953647(-) A-I      intronic
chr7:72954931(-) A-I      intronic
chr7:72968572(-) A-I      intronic
chr7:72957726(-) A-I      intronic
chr7:72960996(-) A-I      intronic
chr7:72955097(-) A-I      intronic
chr7:72965833(-) A-I      intronic
chr7:72955926(-) A-I      intronic
chr7:72957233(-) A-I      intronic
chr7:72970787(-) A-I      intronic
chr7:72966735(-) A-I      intronic
chr7:72954996(-) A-I      intronic
chr7:72960833(-) A-I      intronic
chr7:72965636(-) A-I      intronic
chr7:72953112(-) A-I      intronic
chr7:72957690(-) A-I      intronic
chr7:72964836(-) A-I      intronic
chr7:72953719(-) A-I      intronic
chr7:72965791(-) A-I      intronic
chr7:72967527(-) A-I      intronic
chr7:72970801(-) A-I      intronic
chr7:72955369(-) A-I      intronic
chr7:72957684(-) A-I      intronic
chr7:72953357(-) A-I      intronic
chr7:72963088(-) A-I      intronic
chr7:72953660(-) A-I      intronic
chr7:72953031(-) A-I      intronic
chr7:72964709(-) A-I      intronic
chr7:72960738(-) A-I      intronic
chr7:72957701(-) A-I      intronic
chr7:72952927(-) A-I      intronic
chr7:72966733(-) A-I      intronic
chr7:72957803(-) A-I      intronic
chr7:72967360(-) A-I      intronic
chr7:72970705(-) A-I      intronic
chr7:72952976(-) A-I      intronic
chr7:72959749(-) A-I      intronic
chr7:72957644(-) A-I      intronic
chr7:72953091(-) A-I      intronic
chr7:72967518(-) A-I      intronic
chr7:72968360(-) A-I      intronic
chr7:72969045(-) A-I      intronic
chr7:72965755(-) A-I      intronic
chr7:72955825(-) A-I      intronic
chr7:72957231(-) A-I      intronic
chr7:72964788(-) A-I      intronic
chr7:72957635(-) A-I      intronic
chr7:72953619(-) A-I      intronic
chr7:72953028(-) A-I      intronic
chr7:72969649(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BCL7B
chr7:72952909(-) A-I intron -    22327324
chr7:72952909(-) A-G intron -    22484847
chr7:72952926(-) A-G intron -    22484847
chr7:72952927(-) A-G intron -    22484847
chr7:72952976(-) A-G intron -    22484847
chr7:72953019(-) A-G intron -    22484847
chr7:72953028(-) A-G intron -    22484847
chr7:72953031(-) A-G intron -    22484847
chr7:72953109(-) A-G intron -    22484847
chr7:72953682(-) T-C intron -    22484847
chr7:72953719(-) A-G intron -    22484847
chr7:72953861(-) A-G intron -    22484847
chr7:72954916(-) A-G intron -    22484847
chr7:72954931(-) A-G intron -    22484847
chr7:72954971(-) A-G intron -    22484847
chr7:72954993(-) A-G intron -    22484847
chr7:72955084(-) A-G intron -    22484847
chr7:72957239(-) A-G intron -    22484847
chr7:72957644(-) A-G intron -    22484847
chr7:72957684(-) A-G intron -    22484847
chr7:72957787(-) A-G intron -    22484847
chr7:72957803(-) A-G intron -    22484847
chr7:72958849(-) A-T intron -    22484847
chr7:72959294(-) A-G intron -    22484847
chr7:72959824(-) A-G intron -    22484847
chr7:72960272(-) A-G intron -    22484847
chr7:72960812(-) A-G intron -    22484847
chr7:72960833(-) A-G intron -    22484847
chr7:72962856(-) T-A intron -    22484847
chr7:72963160(-) A-G intron -    22484847
chr7:72964753(-) A-G intron -    22484847
chr7:72964788(-) A-G intron -    22484847
chr7:72964823(-) A-G intron -    22484847
chr7:72964828(-) A-G intron -    22484847
chr7:72964836(-) A-G intron -    22484847
chr7:72965755(-) A-G intron -    22484847
chr7:72965791(-) A-G intron -    22484847
chr7:72965833(-) A-G intron -    22484847
chr7:72966733(-) A-G intron -    22484847
chr7:72966735(-) A-G intron -    22484847
chr7:72966743(-) A-G intron -    22484847
chr7:72966767(-) A-G intron -    22484847
chr7:72967431(-) A-T intron -    22484847
chr7:72967502(-) A-G intron -    22484847
chr7:72967527(-) A-G intron -    22484847
chr7:72968360(-) A-G intron -    22484847
chr7:72968466(-) A-G intron -    22484847
chr7:72968468(-) A-G intron -    22484847
chr7:72968572(-) A-G intron -    22484847
chr7:72969649(-) A-G intron -    22484847
chr7:72970705(-) A-G intron -    22484847
chr7:72970787(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BCL7B
chr7:72950916-72950917(-) m6A 3'UTR//exon       24284625//27773535
chr7:72951156-72951157(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951167-72951168(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951197-72951198(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951210-72951211(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951218-72951219(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951225-72951226(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951237-72951238(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr7:72951483-72951484(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22575960
chr7:72951664-72951665(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:72951700-72951701(-) m6A 3'UTR//CDS//exon       24284625//27773535//27371828//27773536
chr7:72952268-72952269(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536
chr7:72952284-72952285(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535//27371828//27773536
chr7:72952308-72952309(-) m6A 3'UTR//CDS//exon//intron       24284625//27371828//27773536
chr7:72954330-72954331(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr7:72954375-72954376(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr7:72957234-72957235(-) m6A CDS//intron       27773535
chr7:72957935-72957936(-) m6A CDS//exon//intron       24284625//27773535
chr7:72957954-72957955(-) m6A CDS//exon//intron       24284625//27773535
chr7:72958062-72958063(-) m6A exon//intron       27773535
chr7:72966506-72966507(-) m6A CDS//exon//intron       24209618
chr7:72966564-72966565(-) m1A CDS//exon//intron       26863196
chr7:72967883-72967884(-) m6A CDS//intron       24209618
chr7:72971546-72971547(-) m6A exon//intron       24981863
chr7:72971880-72971881(-) m6A 5'UTR//CDS//exon       24209618//24981863//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
BCL7B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: BCL7B

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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