Detail Information

Basic Information:


  VIRBase ID:  

HHID00072016

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           MTMR4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p MTMR4
miRBase
Accession/Entrez ID		 MIMAT0014983 9110
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - FYVE-DSP2//ZFYVE11

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MTMR4
chr17:56584352(-) A-I      intronic
chr17:56569282(-) A-I      intronic
chr17:56577095(-) A-I      intronic
chr17:56579368(-) A-I      intronic
chr17:56579276(-) A-I      intronic
chr17:56579254(-) A-I      intronic
chr17:56578846(-) A-I      intronic
chr17:56578767(-) A-I      intronic
chr17:56578722(-) A-I      intronic
chr17:56577947(-) A-I      intronic
chr17:56577704(-) A-I      intronic
chr17:56577668(-) A-I      intronic
chr17:56577196(-) A-I      intronic
chr17:56577122(-) A-I      intronic
chr17:56576795(-) A-I      intronic
chr17:56577112(-) A-I      intronic
chr17:56583790(-) A-I      intronic
chr17:56583729(-) A-I      intronic
chr17:56583728(-) A-I      intronic
chr17:56583229(-) A-I      intronic
chr17:56583726(-) A-I      intronic
chr17:56583720(-) A-I      intronic
chr17:56583169(-) A-I      intronic
chr17:56580928(-) A-I      intronic
chr17:56580898(-) A-I      intronic
chr17:56580843(-) A-I      intronic
chr17:56580755(-) A-I      intronic
chr17:56579737(-) A-I      intronic
chr17:56579713(-) A-I      intronic
chr17:56579701(-) A-I      intronic
chr17:56579675(-) A-I      intronic
chr17:56576715(-) A-I      intronic
chr17:56571660(-) A-I      intronic
chr17:56571569(-) A-I      intronic
chr17:56569297(-) A-I      intronic
chr17:56579616(-) A-I      intronic
chr17:56570792(-) A-I      intronic
chr17:56578795(-) A-I      intronic
chr17:56570845(-) A-I      intronic
chr17:56576826(-) A-I      intronic
chr17:56570909(-) A-I      intronic
chr17:56583649(-) A-I      intronic
chr17:56569803(-) A-I      intronic
chr17:56583183(-) A-I      intronic
chr17:56578675(-) A-I      intronic
chr17:56578627(-) A-I      intronic
chr17:56570918(-) A-I      intronic
chr17:56571431(-) A-I      intronic
chr17:56577666(-) A-I      intronic
chr17:56583672(-) A-I      intronic
chr17:56577663(-) A-I      intronic
chr17:56570752(-) A-I      intronic
chr17:56571630(-) A-I      intronic
chr17:56583186(-) A-I      intronic
chr17:56570846(-) A-I      intronic
chr17:56581009(-) A-I      intronic
chr17:56570872(-) A-I      intronic
chr17:56580882(-) A-I      intronic
chr17:56586845(-) A-I      intronic
chr17:56571620(-) A-I      intronic
chr17:56583802(-) A-I      intronic
chr17:56569287(-) A-I      intronic
chr17:56571486(-) A-I      intronic
chr17:56583106(-) A-I      intronic
chr17:56583796(-) A-I      intronic
chr17:56583114(-) A-I      intronic
chr17:56570923(-) A-I      intronic
chr17:56577886(-) A-I      intronic
chr17:56580888(-) A-I      intronic
chr17:56570961(-) A-I      intronic
chr17:56583264(-) A-I      intronic
chr17:56583077(-) A-I      intronic
chr17:56577684(-) A-I      intronic
chr17:56581002(-) A-I      intronic
chr17:56576860(-) A-I      intronic
chr17:56571619(-) A-I      intronic
chr17:56577652(-) A-I      intronic
chr17:56569275(-) A-I      intronic
chr17:56578669(-) A-I      intronic
chr17:56583727(-) A-I      intronic
chr17:56580963(-) A-I      intronic
chr17:56579263(-) A-I      intronic
chr17:56583743(-) A-I      intronic
chr17:56570806(-) A-I      intronic
chr17:56583725(-) A-I      intronic
chr17:56577667(-) A-I      intronic
chr17:56583157(-) A-I      intronic
chr17:56579338(-) A-I      intronic
chr17:56569310(-) A-I      intronic
chr17:56576796(-) A-I      intronic
chr17:56577670(-) A-I      intronic
chr17:56579591(-) A-I      intronic
chr17:56570942(-) A-I      intronic
chr17:56570988(-) A-I      intronic
chr17:56583713(-) A-I      intronic
chr17:56583081(-) A-I      intronic
chr17:56576825(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MTMR4
chr17:56577684(-) A-G intron -    22484847
chr17:56583114(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MTMR4
chr17:56568571-56568572(-) m6A 3'UTR       26404942
chr17:56568645-56568646(-) m6A 3'UTR       24981863
chr17:56568663-56568664(-) m6A 3'UTR       24981863
chr17:56569882-56569883(-) m6A CDS//exon       -
chr17:56569940-56569941(-) m6A CDS//exon       -
chr17:56569990-56569991(-) m6A exon//intron       -
chr17:56570207-56570208(-) m6A CDS       -
chr17:56570226-56570227(-) m6A CDS       24284625//27773535//27371828
chr17:56570251-56570252(-) m6A CDS       24284625//27773535//27371828//22608085
chr17:56572308-56572309(-) m6A CDS       24284625//24209618//27773535//27371828//22608085
chr17:56572350-56572351(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56572403-56572404(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56572463-56572464(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56572506-56572507(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56572566-56572567(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr17:56572592-56572593(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr17:56572689-56572690(-) m6A CDS       24284625//24209618//24981863//22608085
chr17:56572779-56572780(-) m6A CDS       24284625//24209618//27371828//22608085
chr17:56572917-56572918(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr17:56572958-56572959(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56573022-56573023(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56573032-56573033(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56573115-56573116(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56573151-56573152(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573230-56573231(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573243-56573244(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573272-56573273(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573301-56573302(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573312-56573313(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573320-56573321(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573393-56573394(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr17:56573432-56573433(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573448-56573449(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr17:56573497-56573498(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:56573523-56573524(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:56573536-56573537(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:56573680-56573681(-) m6A CDS       24284625//24209618//22608085
chr17:56581107-56581108(-) m6A CDS       24284625//24209618//22608085
chr17:56581414-56581415(-) m6A CDS//intron       24284625
chr17:56581447-56581448(-) m6A CDS//intron       24284625
chr17:56581487-56581488(-) m6A CDS//intron       27773535
chr17:56581575-56581576(-) m6A CDS//intron       27773535
chr17:56581753-56581754(-) m6A CDS       27773535
chr17:56585790-56585791(-) m6A exon//intron       27773535
chr17:56585806-56585807(-) m6A exon//intron       27773535
chr17:56590239-56590240(-) m6A 5'UTR//CDS       27371828//27773536
chr17:56591780-56591781(-) m6A 5'UTR//intron       27773536
chr17:56591798-56591799(-) m6A 5'UTR//intron       24209618//27773536
chr17:56595253-56595254(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
MTMR4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: MTMR4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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