Detail Information

Basic Information:


  VIRBase ID:  

HHID00071999

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3121-3p:           LAMP2:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3121-3p LAMP2
miRBase
Accession/Entrez ID		 MIMAT0014983 3920
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD107b//DND//LAMP-2//LAMPB//LGP-96//LGP110

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3121-3p
rs1006143795 chr1:180438334    T/C
rs778817728 chr1:180438323    T/C
rs887772082 chr1:180438327    C/T
rs911596096 chr1:180438331    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LAMP2
chrX:119585474(-) A-I      intronic
chrX:119585458(-) A-I      intronic
chrX:119585448(-) A-I      intronic
chrX:119585436(-) A-I      intronic
chrX:119585435(-) A-I      intronic
chrX:119585434(-) A-I      intronic
chrX:119586628(-) A-I      intronic
chrX:119586498(-) A-I      intronic
chrX:119585537(-) A-I      intronic
chrX:119587408(-) A-I      intronic
chrX:119587563(-) A-I      intronic
chrX:119588428(-) A-I      intronic
chrX:119594580(-) A-I      intronic
chrX:119594614(-) A-I      intronic
chrX:119596265(-) A-I      intronic
chrX:119568877(-) A-I      intronic
chrX:119587497(-) A-I      intronic
chrX:119568885(-) A-I      intronic
chrX:119568902(-) A-I      intronic
chrX:119568767(-) A-I      intronic
chrX:119568898(-) A-I      intronic
chrX:119568899(-) A-I      intronic
chrX:119568923(-) A-I      intronic
chrX:119568818(-) A-I      intronic
chrX:119585425(-) A-I      intronic
chrX:119568792(-) A-I      intronic
chrX:119568821(-) A-I      intronic
chrX:119596260(-) A-I      intronic
chrX:119571739(-) A-I      3'UTR
chrX:119571721(-) A-I      3'UTR
chrX:119571720(-) A-I      3'UTR
chrX:119571716(-) A-I      3'UTR
chrX:119571711(-) A-I      3'UTR
chrX:119571706(-) A-I      3'UTR
chrX:119571839(-) A-I      3'UTR
chrX:119571715(-) A-I      3'UTR
chrX:119571843(-) A-I      3'UTR
chrX:119571993(-) A-I      3'UTR
chrX:119571939(-) A-I      3'UTR
chrX:119571807(-) A-I      3'UTR
chrX:119571737(-) A-I      3'UTR
chrX:119571783(-) A-I      3'UTR
chrX:119571742(-) A-I      3'UTR
chrX:119571771(-) A-I      3'UTR
chrX:119571816(-) A-I      3'UTR
chrX:119571822(-) A-I      3'UTR
chrX:119586533(-) A-I      intronic
chrX:119596132(-) A-I      intronic
chrX:119568721(-) A-I      intronic
chrX:119594662(-) A-I      intronic
chrX:119600969(-) A-I      intronic
chrX:119585274(-) A-I      intronic
chrX:119598745(-) A-I      intronic
chrX:119587421(-) A-I      intronic
chrX:119568829(-) A-I      intronic
chrX:119585457(-) A-I      intronic
chrX:119571779(-) A-I      3'UTR
chrX:119571925(-) A-I      3'UTR
chrX:119571875(-) A-I      3'UTR
chrX:119571849(-) A-I      3'UTR
chrX:119571848(-) A-I      3'UTR
chrX:119571961(-) A-I      3'UTR
chrX:119571813(-) A-I      3'UTR
chrX:119571796(-) A-I      3'UTR
chrX:119571984(-) A-I      3'UTR
chrX:119571778(-) A-I      3'UTR
chrX:119601890(-) A-I      intronic
chrX:119568766(-) A-I      intronic
chrX:119589897(-) A-I      intronic
chrX:119600765(-) A-I      intronic
chrX:119568873(-) A-I      intronic
chrX:119596158(-) A-I      intronic
chrX:119568985(-) A-I      intronic
chrX:119585548(-) A-I      intronic
chrX:119586695(-) A-I      intronic
chrX:119596125(-) A-I      intronic
chrX:119568863(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LAMP2
chrX:119572582(-) A-I exon 3'UTR    22327324
chrX:119568863(-) A-G intron -    22484847
chrX:119571778(-) A-G exon 3'UTR    22484847
chrX:119571779(-) A-G exon 3'UTR    22484847
chrX:119571796(-) A-G exon 3'UTR    22484847
chrX:119571813(-) A-G exon 3'UTR    22484847
chrX:119571848(-) A-G exon 3'UTR    22484847
chrX:119571849(-) A-G exon 3'UTR    22484847
chrX:119571961(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LAMP2
chrX:119571691-119571692(-) m6A 3'UTR//intron       24981863
chrX:119571700-119571701(-) m6A 3'UTR//intron       24981863
chrX:119571708-119571709(-) m6A 3'UTR//intron       24981863
chrX:119571713-119571714(-) m6A 3'UTR//intron       24981863
chrX:119571718-119571719(-) m6A 3'UTR//intron       24981863
chrX:119571723-119571724(-) m6A 3'UTR//intron       24981863
chrX:119571736-119571737(-) m6A 3'UTR//intron       24981863
chrX:119571789-119571790(-) Y 3'UTR//intron       26075521
chrX:119571806-119571807(-) m6A 3'UTR//intron       24981863
chrX:119581711-119581712(-) m6A CDS       26404942
chrX:119581772-119581773(-) m6A CDS       26404942
chrX:119581785-119581786(-) m6A CDS       26404942
chrX:119581856-119581857(-) m6A CDS       26404942
chrX:119581861-119581862(-) m6A CDS       26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3121-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
LAMP2
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3121-3p
Interactor2: LAMP2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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