Detail Information

Basic Information:


  VIRBase ID:  

HHID00071623

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-2110:           SFT2D1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-2110 SFT2D1
miRBase
Accession/Entrez ID		 MIMAT0010133 113402
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C6orf83//pRGR1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-2110
rs114530801 chr10:114174163    G/A
rs114530801 chr10:114174163    G/C
rs114530801 chr10:114174163    G/T
rs1168982220 chr10:114174162    C/G
rs1188283086 chr10:114174156    A/T
rs1246581316 chr10:114174158    C/T
rs1412803607 chr10:114174164    T/A
rs1431021422 chr10:114174157    G/C
rs1476834649 chr10:114174154    TCAG/T
rs192664871 chr10:114174154    T/C
rs192664871 chr10:114174154    T/G
rs573692968 chr10:114174159    G/A
rs573692968 chr10:114174159    G/C
rs755562830 chr10:114174148    CCTCA/C
rs1178383827 chr10:114174165    T/G
rs1418383763 chr10:114174167    C/T
rs1434681640 chr10:114174169    C/T
rs745914474 chr10:114174166    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SFT2D1
chr6:166735546(-) A-I      intronic
chr6:166735548(-) A-I      intronic
chr6:166735572(-) A-I      intronic
chr6:166747969(-) A-I      intronic
chr6:166735543(-) A-I      intronic
chr6:166735535(-) A-I      intronic
chr6:166735504(-) A-I      intronic
chr6:166735500(-) A-I      intronic
chr6:166735469(-) A-I      intronic
chr6:166735444(-) A-I      intronic
chr6:166735424(-) A-I      intronic
chr6:166734522(-) A-I      intronic
chr6:166734445(-) A-I      intronic
chr6:166734209(-) A-I      intronic
chr6:166734201(-) A-I      intronic
chr6:166734076(-) A-I      intronic
chr6:166754851(-) A-I      intronic
chr6:166735564(-) A-I      intronic
chr6:166734409(-) A-I      intronic
chr6:166745917(-) A-I      intronic
chr6:166745920(-) A-I      intronic
chr6:166754769(-) A-I      intronic
chr6:166750217(-) A-I      intronic
chr6:166747994(-) A-I      intronic
chr6:166747839(-) A-I      intronic
chr6:166745968(-) A-I      intronic
chr6:166745957(-) A-I      intronic
chr6:166745937(-) A-I      intronic
chr6:166745926(-) A-I      intronic
chr6:166736057(-) A-I      intronic
chr6:166735995(-) A-I      intronic
chr6:166735920(-) A-I      intronic
chr6:166735914(-) A-I      intronic
chr6:166735622(-) A-I      intronic
chr6:166735613(-) A-I      intronic
chr6:166735603(-) A-I      intronic
chr6:166735598(-) A-I      intronic
chr6:166735590(-) A-I      intronic
chr6:166754854(-) A-I      intronic
chr6:166734277(-) A-I      intronic
chr6:166747865(-) A-I      intronic
chr6:166734200(-) A-I      intronic
chr6:166735650(-) A-I      intronic
chr6:166735652(-) A-I      intronic
chr6:166735575(-) A-I      intronic
chr6:166736033(-) A-I      intronic
chr6:166745854(-) A-I      intronic
chr6:166734426(-) A-I      intronic
chr6:166750276(-) A-I      intronic
chr6:166735510(-) A-I      intronic
chr6:166735935(-) A-I      intronic
chr6:166745981(-) A-I      intronic
chr6:166734563(-) A-I      intronic
chr6:166747848(-) A-I      intronic
chr6:166734499(-) A-I      intronic
chr6:166735547(-) A-I      intronic
chr6:166750235(-) A-I      intronic
chr6:166734429(-) A-I      intronic
chr6:166735437(-) A-I      intronic
chr6:166734080(-) A-I      intronic
chr6:166735440(-) A-I      intronic
chr6:166745947(-) A-I      intronic
chr6:166745848(-) A-I      intronic
chr6:166735477(-) A-I      intronic
chr6:166754704(-) A-I      intronic
chr6:166746015(-) A-I      intronic
chr6:166735464(-) A-I      intronic
chr6:166736069(-) A-I      intronic
chr6:166745922(-) A-I      intronic
chr6:166747933(-) A-I      intronic
chr6:166745923(-) A-I      intronic
chr6:166754689(-) A-I      intronic
chr6:166745971(-) A-I      intronic
chr6:166735974(-) A-I      intronic
chr6:166736010(-) A-I      intronic
chr6:166736164(-) A-I      intronic
chr6:166736059(-) A-I      intronic
chr6:166747930(-) A-I      intronic
chr6:166734145(-) A-I      intronic
chr6:166750237(-) A-I      intronic
chr6:166735589(-) A-I      intronic
chr6:166735550(-) A-I      intronic
chr6:166747941(-) A-I      intronic
chr6:166735945(-) A-I      intronic
chr6:166734278(-) A-I      intronic
chr6:166735643(-) A-I      intronic
chr6:166734143(-) A-I      intronic
chr6:166745938(-) A-I      intronic
chr6:166745871(-) A-I      intronic
chr6:166745921(-) A-I      intronic
chr6:166734517(-) A-I      intronic
chr6:166745845(-) A-I      intronic
chr6:166734536(-) A-I      intronic
chr6:166734597(-) A-I      intronic
chr6:166734237(-) A-I      intronic
chr6:166747999(-) A-I      intronic
chr6:166735457(-) A-I      intronic
chr6:166735566(-) A-I      intronic
chr6:166734477(-) A-I      intronic
chr6:166734412(-) A-I      intronic
chr6:166750314(-) A-I      intronic
chr6:166734261(-) A-I      intronic
chr6:166747832(-) A-I      intronic
chr6:166736015(-) A-I      intronic
chr6:166735975(-) A-I      intronic
chr6:166745907(-) A-I      intronic
chr6:166734204(-) A-I      intronic
chr6:166734560(-) A-I      intronic
chr6:166735986(-) A-I      intronic
chr6:166747913(-) A-I      intronic
chr6:166735553(-) A-I      intronic
chr6:166736172(-) A-I      intronic
chr6:166735509(-) A-I      intronic
chr6:166735549(-) A-I      intronic
chr6:166745943(-) A-I      intronic
chr6:166736132(-) A-I      intronic
chr6:166746014(-) A-I      intronic
chr6:166734523(-) A-I      intronic
chr6:166735574(-) A-I      intronic
chr6:166734516(-) A-I      intronic
chr6:166750236(-) A-I      intronic
chr6:166735998(-) A-I      intronic
chr6:166747959(-) A-I      intronic
chr6:166736072(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SFT2D1
chr6:166734193(-) A-I intron -    15342557   //15258596
chr6:166734516(-) A-I intron -    15342557   //15258596   //21960545
chr6:166734560(-) A-I intron -    15342557   //15258596
chr6:166734597(-) A-I intron -    15342557   //15258596
chr6:166734689(-) A-I intron -    15342557
chr6:166747832(-) A-I intron -    15258596
chr6:166747838(-) A-I intron -    15258596
chr6:166747848(-) A-I intron -    15258596
chr6:166747861(-) A-I intron -    15258596
chr6:166735945(-) A-I intron -    22327324
chr6:166736059(-) A-I intron -    22327324
chr6:166745943(-) A-I intron -    22327324
chr6:166747959(-) A-I intron -    22327324
chr6:166751574(-) A-I intron -    21960545
chr6:166751605(-) A-I intron -    21960545
chr6:166734143(-) A-G intron -    22484847
chr6:166734145(-) A-G intron -    22484847
chr6:166734516(-) A-G intron -    22484847
chr6:166734536(-) A-G intron -    22484847
chr6:166734560(-) A-G intron -    22484847
chr6:166735437(-) A-G intron -    22484847
chr6:166735440(-) A-G intron -    22484847
chr6:166735457(-) A-G intron -    22484847
chr6:166735464(-) A-G intron -    22484847
chr6:166735477(-) A-G intron -    22484847
chr6:166735509(-) A-G intron -    22484847
chr6:166735510(-) A-G intron -    22484847
chr6:166735547(-) A-G intron -    22484847
chr6:166735549(-) A-G intron -    22484847
chr6:166735550(-) A-G intron -    22484847
chr6:166735553(-) A-G intron -    22484847
chr6:166735566(-) A-G intron -    22484847
chr6:166735567(-) A-G intron -    22484847
chr6:166735574(-) A-G intron -    22484847
chr6:166735589(-) A-G intron -    22484847
chr6:166735945(-) A-G intron -    22484847
chr6:166735998(-) A-G intron -    22484847
chr6:166736012(-) A-G intron -    22484847
chr6:166736059(-) A-G intron -    22484847
chr6:166736069(-) A-G intron -    22484847
chr6:166736072(-) A-G intron -    22484847
chr6:166736081(-) A-G intron -    22484847
chr6:166736096(-) A-G intron -    22484847
chr6:166736132(-) A-G intron -    22484847
chr6:166736164(-) A-G intron -    22484847
chr6:166736172(-) A-G intron -    22484847
chr6:166745839(-) A-G intron -    22484847
chr6:166745845(-) A-G intron -    22484847
chr6:166745854(-) A-G intron -    22484847
chr6:166745855(-) T-C intron -    22484847
chr6:166745871(-) A-G intron -    22484847
chr6:166745881(-) A-G intron -    22484847
chr6:166745907(-) A-G intron -    22484847
chr6:166745923(-) A-G intron -    22484847
chr6:166745938(-) A-G intron -    22484847
chr6:166745947(-) A-G intron -    22484847
chr6:166747832(-) A-G intron -    22484847
chr6:166747848(-) A-G intron -    22484847
chr6:166747865(-) A-G intron -    22484847
chr6:166747933(-) A-G intron -    22484847
chr6:166747959(-) A-G intron -    22484847
chr6:166750240(-) A-G intron -    22484847
chr6:166750325(-) A-G intron -    22484847
chr6:166754704(-) A-G intron -    22484847
chr6:166754855(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SFT2D1
chr6:166733234-166733235(-) m6A 3'UTR       27773535
chr6:166733307-166733308(-) m6A 3'UTR       27773535
chr6:166756066-166756067(-) m6A 5'UTR       24981863
chr6:166756071-166756072(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-2110
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
SFT2D1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-2110
Interactor2: SFT2D1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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