Detail Information

Basic Information:


  VIRBase ID:  

HHID00071621

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-2110:           NFKBID:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-2110 NFKBID
miRBase
Accession/Entrez ID		 MIMAT0010133 84807
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - IkappaBNS//IkBNS//TA-NFKBH

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-2110
rs114530801 chr10:114174163    G/A
rs114530801 chr10:114174163    G/C
rs114530801 chr10:114174163    G/T
rs1168982220 chr10:114174162    C/G
rs1188283086 chr10:114174156    A/T
rs1246581316 chr10:114174158    C/T
rs1412803607 chr10:114174164    T/A
rs1431021422 chr10:114174157    G/C
rs1476834649 chr10:114174154    TCAG/T
rs192664871 chr10:114174154    T/C
rs192664871 chr10:114174154    T/G
rs573692968 chr10:114174159    G/A
rs573692968 chr10:114174159    G/C
rs755562830 chr10:114174148    CCTCA/C
rs1178383827 chr10:114174165    T/G
rs1418383763 chr10:114174167    C/T
rs1434681640 chr10:114174169    C/T
rs745914474 chr10:114174166    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NFKBID
chr19:36385123(-) A-I      intronic
chr19:36388268(-) A-I      intronic
chr19:36383082(-) A-I      intronic
chr19:36385492(-) A-I      intronic
chr19:36383021(-) A-I      intronic
chr19:36383069(-) A-I      intronic
chr19:36383172(-) A-I      intronic
chr19:36383947(-) A-I      intronic
chr19:36383962(-) A-I      intronic
chr19:36384021(-) A-I      intronic
chr19:36382822(-) A-I      intronic
chr19:36382964(-) A-I      intronic
chr19:36382882(-) A-I      intronic
chr19:36382887(-) A-I      intronic
chr19:36383125(-) A-I      intronic
chr19:36388294(-) A-I      intronic
chr19:36383121(-) A-I      intronic
chr19:36383086(-) A-I      intronic
chr19:36383989(-) A-I      intronic
chr19:36383181(-) A-I      intronic
chr19:36382863(-) A-I      intronic
chr19:36384553(-) A-I      intronic
chr19:36382730(-) A-I      intronic
chr19:36388224(-) A-I      intronic
chr19:36382755(-) A-I      intronic
chr19:36383369(-) A-I      intronic
chr19:36383051(-) A-I      intronic
chr19:36388324(-) A-I      intronic
chr19:36382901(-) A-I      intronic
chr19:36382682(-) A-I      intronic
chr19:36383875(-) A-I      intronic
chr19:36382660(-) A-I      intronic
chr19:36383000(-) A-I      intronic
chr19:36383824(-) A-I      intronic
chr19:36383153(-) A-I      intronic
chr19:36383210(-) A-I      intronic
chr19:36383963(-) A-I      intronic
chr19:36382554(-) A-I      intronic
chr19:36385387(-) A-I      intronic
chr19:36383142(-) A-I      intronic
chr19:36389237(-) A-I      intronic
chr19:36382669(-) A-I      intronic
chr19:36383135(-) A-I      intronic
chr19:36382657(-) A-I      intronic
chr19:36383133(-) A-I      intronic
chr19:36382706(-) A-I      intronic
chr19:36385392(-) A-I      intronic
chr19:36382687(-) A-I      intronic
chr19:36383123(-) A-I      intronic
chr19:36388186(-) A-I      intronic
chr19:36391824(-) A-I      intronic
chr19:36388187(-) A-I      intronic
chr19:36392650(-) A-I      intronic
chr19:36383177(-) A-I      intronic
chr19:36383131(-) A-I      intronic
chr19:36383949(-) A-I      intronic
chr19:36383158(-) A-I      intronic
chr19:36388295(-) A-I      intronic
chr19:36388192(-) A-I      intronic
chr19:36382686(-) A-I      intronic
chr19:36383050(-) A-I      intronic
chr19:36382526(-) A-I      intronic
chr19:36384071(-) A-I      intronic
chr19:36389167(-) A-I      intronic
chr19:36391882(-) A-I      intronic
chr19:36382988(-) A-I      intronic
chr19:36382982(-) A-I      intronic
chr19:36383102(-) A-I      intronic
chr19:36382923(-) A-I      intronic
chr19:36385562(-) A-I      intronic
chr19:36384069(-) A-I      intronic
chr19:36382847(-) A-I      intronic
chr19:36389142(-) A-I      intronic
chr19:36383157(-) A-I      intronic
chr19:36385651(-) A-I      intronic
chr19:36382900(-) A-I      intronic
chr19:36383340(-) A-I      intronic
chr19:36382922(-) A-I      intronic
chr19:36383849(-) A-I      intronic
chr19:36383352(-) A-I      intronic
chr19:36381728(-) A-I      intronic
chr19:36383007(-) A-I      intronic
chr19:36383221(-) A-I      intronic
chr19:36383124(-) A-I      intronic
chr19:36383370(-) A-I      intronic
chr19:36379673(-) A-I      intronic
chr19:36383227(-) A-I      intronic
chr19:36384065(-) A-I      intronic
chr19:36383226(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NFKBID
chr19:36382661(-) A-I intron -    22327324
chr19:36383007(-) A-I intron -    22327324
chr19:36383051(-) A-I intron -    22327324
chr19:36383078(-) A-I intron -    22327324
chr19:36383118(-) A-I intron -    22327324
chr19:36383177(-) A-I intron -    22327324
chr19:36383226(-) A-I intron -    22327324
chr19:36383963(-) A-I intron -    22327324
chr19:36381600(-) A-G intron -    22484847
chr19:36382554(-) A-G intron -    22484847
chr19:36382661(-) A-G intron -    22484847
chr19:36382669(-) A-G intron -    22484847
chr19:36382706(-) A-G intron -    22484847
chr19:36382707(-) A-G intron -    22484847
chr19:36382730(-) A-G intron -    22484847
chr19:36382755(-) A-G intron -    22484847
chr19:36382901(-) A-G intron -    22484847
chr19:36382922(-) A-G intron -    22484847
chr19:36382988(-) A-G intron -    22484847
chr19:36383007(-) A-G intron -    22484847
chr19:36383050(-) A-G intron -    22484847
chr19:36383051(-) A-G intron -    22484847
chr19:36383078(-) A-G intron -    22484847
chr19:36383086(-) A-G intron -    22484847
chr19:36383118(-) A-G intron -    22484847
chr19:36383121(-) A-G intron -    22484847
chr19:36383123(-) A-G intron -    22484847
chr19:36383124(-) A-G intron -    22484847
chr19:36383125(-) A-G intron -    22484847
chr19:36383127(-) A-G intron -    22484847
chr19:36383153(-) A-G intron -    22484847
chr19:36383177(-) A-G intron -    22484847
chr19:36383181(-) A-G intron -    22484847
chr19:36383221(-) A-G intron -    22484847
chr19:36383226(-) A-G intron -    22484847
chr19:36383227(-) A-G intron -    22484847
chr19:36383824(-) A-G intron -    22484847
chr19:36383959(-) A-G intron -    22484847
chr19:36383963(-) A-G intron -    22484847
chr19:36383989(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NFKBID
chr19:36378869-36378870(-) m6A 3'UTR       27773535
chr19:36378928-36378929(-) m6A 3'UTR       27773535
chr19:36378983-36378984(-) m6A 3'UTR       27773535
chr19:36379000-36379001(-) m6A 3'UTR       27773535
chr19:36379009-36379010(-) m6A 3'UTR       27773535
chr19:36379038-36379039(-) m6A 3'UTR       27773535
chr19:36379127-36379128(-) m6A 3'UTR       27773535
chr19:36379204-36379205(-) m6A 3'UTR       27773535
chr19:36379306-36379307(-) m6A 3'UTR       26404942
chr19:36379332-36379333(-) m6A 3'UTR       26404942
chr19:36379382-36379383(-) m6A 3'UTR       26404942
chr19:36379408-36379409(-) m6A 3'UTR       26404942
chr19:36379439-36379440(-) m6A 3'UTR       26404942
chr19:36379446-36379447(-) m6A 3'UTR       26404942
chr19:36379452-36379453(-) m6A 3'UTR       26404942
chr19:36379458-36379459(-) m6A 3'UTR       26404942
chr19:36387994-36387995(-) m6A CDS//intron       -
chr19:36388728-36388729(-) m6A 5'UTR//exon//intron       27371828
chr19:36389431-36389432(-) m6A 5'UTR//exon       27371828//27773536
chr19:36389688-36389689(-) m6A 5'UTR//exon       27371828//27773536
chr19:36390623-36390624(-) m6A exon//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-2110
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
NFKBID
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-2110
Interactor2: NFKBID

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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