Detail Information

Basic Information:


  VIRBase ID:  

HHID00071618

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-2110:           RSBN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-2110 RSBN1
miRBase
Accession/Entrez ID		 MIMAT0010133 54665
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - KDM9//ROSBIN

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-2110
rs114530801 chr10:114174163    G/A
rs114530801 chr10:114174163    G/C
rs114530801 chr10:114174163    G/T
rs1168982220 chr10:114174162    C/G
rs1188283086 chr10:114174156    A/T
rs1246581316 chr10:114174158    C/T
rs1412803607 chr10:114174164    T/A
rs1431021422 chr10:114174157    G/C
rs1476834649 chr10:114174154    TCAG/T
rs192664871 chr10:114174154    T/C
rs192664871 chr10:114174154    T/G
rs573692968 chr10:114174159    G/A
rs573692968 chr10:114174159    G/C
rs755562830 chr10:114174148    CCTCA/C
rs1178383827 chr10:114174165    T/G
rs1418383763 chr10:114174167    C/T
rs1434681640 chr10:114174169    C/T
rs745914474 chr10:114174166    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RSBN1
chr1:114318172(-) A-I      intronic
chr1:114316459(-) A-I      intronic
chr1:114318160(-) A-I      intronic
chr1:114318153(-) A-I      intronic
chr1:114318152(-) A-I      intronic
chr1:114318137(-) A-I      intronic
chr1:114318011(-) A-I      intronic
chr1:114318132(-) A-I      intronic
chr1:114317997(-) A-I      intronic
chr1:114317993(-) A-I      intronic
chr1:114317966(-) A-I      intronic
chr1:114317954(-) A-I      intronic
chr1:114317963(-) A-I      intronic
chr1:114317961(-) A-I      intronic
chr1:114317958(-) A-I      intronic
chr1:114318178(-) A-I      intronic
chr1:114318177(-) A-I      intronic
chr1:114318175(-) A-I      intronic
chr1:114316541(-) A-I      intronic
chr1:114316563(-) A-I      intronic
chr1:114316525(-) A-I      intronic
chr1:114316038(-) A-I      intronic
chr1:114316468(-) A-I      intronic
chr1:114316083(-) A-I      intronic
chr1:114316024(-) A-I      intronic
chr1:114320983(-) A-I      intronic
chr1:114346490(-) A-I      intronic
chr1:114318231(-) A-I      intronic
chr1:114346504(-) A-I      intronic
chr1:114318155(-) A-I      intronic
chr1:114316053(-) A-I      intronic
chr1:114318154(-) A-I      intronic
chr1:114318141(-) A-I      intronic
chr1:114317840(-) A-I      intronic
chr1:114347907(-) A-I      intronic
chr1:114317850(-) A-I      intronic
chr1:114321064(-) A-I      intronic
chr1:114346688(-) A-I      intronic
chr1:114315902(-) A-I      intronic
chr1:114316062(-) A-I      intronic
chr1:114320993(-) A-I      intronic
chr1:114336375(-) A-I      intronic
chr1:114318127(-) A-I      intronic
chr1:114347895(-) A-I      intronic
chr1:114344815(-) A-I      intronic
chr1:114335210(-) A-I      intronic
chr1:114318056(-) A-I      intronic
chr1:114344791(-) A-I      intronic
chr1:114317994(-) A-I      intronic
chr1:114317177(-) A-I      intronic
chr1:114315979(-) A-I      intronic
chr1:114316392(-) A-I      intronic
chr1:114343674(-) A-I      intronic
chr1:114335128(-) A-I      intronic
chr1:114348900(-) A-I      intronic
chr1:114345898(-) A-I      intronic
chr1:114345903(-) A-I      intronic
chr1:114347811(-) A-I      intronic
chr1:114318092(-) A-I      intronic
chr1:114321057(-) A-I      intronic
chr1:114347828(-) A-I      intronic
chr1:114319332(-) A-I      intronic
chr1:114347921(-) A-I      intronic
chr1:114346682(-) A-I      intronic
chr1:114345907(-) A-I      intronic
chr1:114346709(-) A-I      intronic
chr1:114317784(-) A-I      intronic
chr1:114318238(-) A-I      intronic
chr1:114317851(-) A-I      intronic
chr1:114318088(-) A-I      intronic
chr1:114318101(-) A-I      intronic
chr1:114315929(-) A-I      intronic
chr1:114317920(-) A-I      intronic
chr1:114320986(-) A-I      intronic
chr1:114318123(-) A-I      intronic
chr1:114347906(-) A-I      intronic
chr1:114316034(-) A-I      intronic
chr1:114346669(-) A-I      intronic
chr1:114315983(-) A-I      intronic
chr1:114317823(-) A-I      intronic
chr1:114346468(-) A-I      intronic
chr1:114317826(-) A-I      intronic
chr1:114317926(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RSBN1
chr1:114316034(-) A-G intron -    22484847
chr1:114317177(-) A-G intron -    22484847
chr1:114317850(-) A-G intron -    22484847
chr1:114317851(-) A-G intron -    22484847
chr1:114317926(-) A-G intron -    22484847
chr1:114318088(-) A-G intron -    22484847
chr1:114318101(-) A-G intron -    22484847
chr1:114318238(-) A-G intron -    22484847
chr1:114347906(-) A-G intron -    22484847
chr1:114348900(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RSBN1
chr1:114305313-114305314(-) m6A 3'UTR       27773535
chr1:114305318-114305319(-) m6A 3'UTR       27773535
chr1:114306765-114306766(-) m6A 3'UTR       27773535
chr1:114306781-114306782(-) m6A 3'UTR       27773535
chr1:114306924-114306925(-) m6A 3'UTR       27773535
chr1:114306950-114306951(-) m6A 3'UTR       27773535
chr1:114308083-114308084(-) Y 3'UTR       26075521
chr1:114308585-114308586(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr1:114308622-114308623(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:114308650-114308651(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:114308655-114308656(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:114308690-114308691(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:114308715-114308716(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:114308789-114308790(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:114308848-114308849(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:114308872-114308873(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:114308904-114308905(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:114308948-114308949(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:114340013-114340014(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:114340081-114340082(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:114340090-114340091(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:114340224-114340225(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:114340272-114340273(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:114340307-114340308(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:114340335-114340336(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:114340358-114340359(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:114340416-114340417(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:114340452-114340453(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:114340473-114340474(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:114340523-114340524(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:114340567-114340568(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:114340578-114340579(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr1:114340634-114340635(-) m6A CDS       24981863//27773535//27371828//22608085
chr1:114340655-114340656(-) m6A CDS       27773535//27371828//22608085
chr1:114354367-114354368(-) m6A CDS       27773535//27371828
chr1:114354390-114354391(-) m6A CDS       27773535//27371828
chr1:114354409-114354410(-) m6A CDS       27773535//27371828
chr1:114354809-114354810(-) m6A CDS//intron       25456834//24981863//27371828
chr1:114354828-114354829(-) m6A CDS//intron       25456834//24981863//27371828
chr1:114354983-114354984(-) m6A CDS       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-2110
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
RSBN1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-2110
Interactor2: RSBN1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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