Detail Information

Basic Information:


  VIRBase ID:  

HHID00071394

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-365a-5p:           EPRS1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-365a-5p EPRS1
miRBase
Accession/Entrez ID		 MIMAT0009199 2058
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - EARS//EPRS//GLUPRORS//HLD15//PARS//PIG32//QARS//QPRS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-365a-5p
rs1166908611 chr16:14309308    T/C
rs1368596991 chr16:14309314    G/A
rs1380926089 chr16:14309318    A/G
rs1396179427 chr16:14309310    G/C
rs1428928383 chr16:14309320    G/A
rs773834113 chr16:14309301    G/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EPRS1
chr1:220176090(-) A-I      intronic
chr1:220143488(-) A-I      intronic
chr1:220143248(-) A-I      intronic
chr1:220143437(-) A-I      intronic
chr1:220143436(-) A-I      intronic
chr1:220143489(-) A-I      intronic
chr1:220143491(-) A-I      intronic
chr1:220158282(-) A-I      intronic
chr1:220166182(-) A-I      intronic
chr1:220143952(-) A-I      intronic
chr1:220158254(-) A-I      intronic
chr1:220158222(-) A-I      intronic
chr1:220158219(-) A-I      intronic
chr1:220166145(-) A-I      intronic
chr1:220158257(-) A-I      intronic
chr1:220158270(-) A-I      intronic
chr1:220158260(-) A-I      intronic
chr1:220174903(-) A-I      intronic
chr1:220174885(-) A-I      intronic
chr1:220174873(-) A-I      intronic
chr1:220174867(-) A-I      intronic
chr1:220174856(-) A-I      intronic
chr1:220174823(-) A-I      intronic
chr1:220174810(-) A-I      intronic
chr1:220174211(-) A-I      intronic
chr1:220174111(-) A-I      intronic
chr1:220173133(-) A-I      intronic
chr1:220172023(-) A-I      intronic
chr1:220168266(-) A-I      intronic
chr1:220168236(-) A-I      intronic
chr1:220168229(-) A-I      intronic
chr1:220168166(-) A-I      intronic
chr1:220168159(-) A-I      intronic
chr1:220168133(-) A-I      intronic
chr1:220168087(-) A-I      intronic
chr1:220168050(-) A-I      intronic
chr1:220168025(-) A-I      intronic
chr1:220168024(-) A-I      intronic
chr1:220166465(-) A-I      intronic
chr1:220166187(-) A-I      intronic
chr1:220166150(-) A-I      intronic
chr1:220166093(-) A-I      intronic
chr1:220166082(-) A-I      intronic
chr1:220166077(-) A-I      intronic
chr1:220166064(-) A-I      intronic
chr1:220166047(-) A-I      intronic
chr1:220166043(-) A-I      intronic
chr1:220166025(-) A-I      intronic
chr1:220166024(-) A-I      intronic
chr1:220158310(-) A-I      intronic
chr1:220144057(-) A-I      intronic
chr1:220213110(-) A-I      intronic
chr1:220209433(-) A-I      intronic
chr1:220209430(-) A-I      intronic
chr1:220209387(-) A-I      intronic
chr1:220209339(-) A-I      intronic
chr1:220143963(-) A-I      intronic
chr1:220143916(-) A-I      intronic
chr1:220143878(-) A-I      intronic
chr1:220143877(-) A-I      intronic
chr1:220143445(-) A-I      intronic
chr1:220208983(-) A-I      intronic
chr1:220208726(-) A-I      intronic
chr1:220143388(-) A-I      intronic
chr1:220143377(-) A-I      intronic
chr1:220174266(-) A-I      intronic
chr1:220143365(-) A-I      intronic
chr1:220143346(-) A-I      intronic
chr1:220208687(-) A-I      intronic
chr1:220208664(-) A-I      intronic
chr1:220208662(-) A-I      intronic
chr1:220208660(-) A-I      intronic
chr1:220208657(-) A-I      intronic
chr1:220208633(-) A-I      intronic
chr1:220205545(-) A-I      intronic
chr1:220204358(-) A-I      intronic
chr1:220204347(-) A-I      intronic
chr1:220200067(-) A-I      intronic
chr1:220200056(-) A-I      intronic
chr1:220200041(-) A-I      intronic
chr1:220200040(-) A-I      intronic
chr1:220200037(-) A-I      intronic
chr1:220190011(-) A-I      intronic
chr1:220189954(-) A-I      intronic
chr1:220189494(-) A-I      intronic
chr1:220182255(-) A-I      intronic
chr1:220182214(-) A-I      intronic
chr1:220182095(-) A-I      intronic
chr1:220177579(-) A-I      intronic
chr1:220176030(-) A-I      intronic
chr1:220176019(-) A-I      intronic
chr1:220213307(-) A-I      intronic
chr1:220189804(-) A-I      intronic
chr1:220189564(-) A-I      intronic
chr1:220189874(-) A-I      intronic
chr1:220168101(-) A-I      intronic
chr1:220143287(-) A-I      intronic
chr1:220175451(-) A-I      intronic
chr1:220182122(-) A-I      intronic
chr1:220189677(-) A-I      intronic
chr1:220212998(-) A-I      intronic
chr1:220166186(-) A-I      intronic
chr1:220189813(-) A-I      intronic
chr1:220172156(-) A-I      intronic
chr1:220143328(-) A-I      intronic
chr1:220168289(-) A-I      intronic
chr1:220158141(-) A-I      intronic
chr1:220143357(-) A-I      intronic
chr1:220189562(-) A-I      intronic
chr1:220143915(-) A-I      intronic
chr1:220189850(-) A-I      intronic
chr1:220189960(-) A-I      intronic
chr1:220181250(-) A-I      intronic
chr1:220143341(-) A-I      intronic
chr1:220157858(-) A-I      intronic
chr1:220174199(-) A-I      intronic
chr1:220143259(-) A-I      intronic
chr1:220158340(-) A-I      intronic
chr1:220143971(-) A-I      intronic
chr1:220143443(-) A-I      intronic
chr1:220174819(-) A-I      intronic
chr1:220205633(-) A-I      intronic
chr1:220182260(-) A-I      intronic
chr1:220158893(-) A-I      intronic
chr1:220175150(-) A-I      intronic
chr1:220157964(-) A-I      intronic
chr1:220166102(-) A-I      intronic
chr1:220144043(-) A-I      intronic
chr1:220188722(-) A-I      intronic
chr1:220166388(-) A-I      intronic
chr1:220166147(-) A-I      intronic
chr1:220209023(-) A-I      intronic
chr1:220143254(-) A-I      intronic
chr1:220204322(-) A-I      intronic
chr1:220199935(-) A-I      intronic
chr1:220168267(-) A-I      intronic
chr1:220143260(-) A-I      intronic
chr1:220204312(-) A-I      intronic
chr1:220209534(-) A-I      intronic
chr1:220143302(-) A-I      intronic
chr1:220209417(-) A-I      intronic
chr1:220143268(-) A-I      intronic
chr1:220204246(-) A-I      intronic
chr1:220213462(-) A-I      intronic
chr1:220143876(-) A-I      intronic
chr1:220166453(-) A-I      intronic
chr1:220189503(-) A-I      intronic
chr1:220204251(-) A-I      intronic
chr1:220189891(-) A-I      intronic
chr1:220212877(-) A-I      intronic
chr1:220210868(-) A-I      intronic
chr1:220174845(-) A-I      intronic
chr1:220174844(-) A-I      intronic
chr1:220182237(-) A-I      intronic
chr1:220158128(-) A-I      intronic
chr1:220211810(-) A-I      intronic
chr1:220182185(-) A-I      intronic
chr1:220172049(-) A-I      intronic
chr1:220143864(-) A-I      intronic
chr1:220200011(-) A-I      intronic
chr1:220200822(-) A-I      intronic
chr1:220143331(-) A-I      intronic
chr1:220182312(-) A-I      intronic
chr1:220209022(-) A-I      intronic
chr1:220200001(-) A-I      intronic
chr1:220172053(-) A-I      intronic
chr1:220157923(-) A-I      intronic
chr1:220213216(-) A-I      intronic
chr1:220166490(-) A-I      intronic
chr1:220189602(-) A-I      intronic
chr1:220183969(-) A-I      intronic
chr1:220143255(-) A-I      intronic
chr1:220213359(-) A-I      intronic
chr1:220189969(-) A-I      intronic
chr1:220177575(-) A-I      intronic
chr1:220174835(-) A-I      intronic
chr1:220174916(-) A-I      intronic
chr1:220204351(-) A-I      intronic
chr1:220175154(-) A-I      intronic
chr1:220181244(-) A-I      intronic
chr1:220209130(-) A-I      intronic
chr1:220143954(-) A-I      intronic
chr1:220182217(-) A-I      intronic
chr1:220190007(-) A-I      intronic
chr1:220166385(-) A-I      intronic
chr1:220174897(-) A-I      intronic
chr1:220189881(-) A-I      intronic
chr1:220143928(-) A-I      intronic
chr1:220181305(-) A-I      intronic
chr1:220143192(-) A-I      intronic
chr1:220174804(-) A-I      intronic
chr1:220158795(-) A-I      intronic
chr1:220172163(-) A-I      intronic
chr1:220174762(-) A-I      intronic
chr1:220143972(-) A-I      intronic
chr1:220188742(-) A-I      intronic
chr1:220190020(-) A-I      intronic
chr1:220166157(-) A-I      intronic
chr1:220182178(-) A-I      intronic
chr1:220168100(-) A-I      intronic
chr1:220143998(-) A-I      intronic
chr1:220189913(-) A-I      intronic
chr1:220157984(-) A-I      intronic
chr1:220158060(-) A-I      intronic
chr1:220144037(-) A-I      intronic
chr1:220182186(-) A-I      intronic
chr1:220157899(-) A-I      intronic
chr1:220143198(-) A-I      intronic
chr1:220181268(-) A-I      intronic
chr1:220158833(-) A-I      intronic
chr1:220211801(-) A-I      intronic
chr1:220143332(-) A-I      intronic
chr1:220168078(-) A-I      intronic
chr1:220143342(-) A-I      intronic
chr1:220208590(-) A-I      intronic
chr1:220189845(-) A-I      intronic
chr1:220182189(-) A-I      intronic
chr1:220158324(-) A-I      intronic
chr1:220181260(-) A-I      intronic
chr1:220214624(-) A-I      intronic
chr1:220168123(-) A-I      intronic
chr1:220172155(-) A-I      intronic
chr1:220204372(-) A-I      intronic
chr1:220166160(-) A-I      intronic
chr1:220204352(-) A-I      intronic
chr1:220144038(-) A-I      intronic
chr1:220143957(-) A-I      intronic
chr1:220143320(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-365a-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
EPRS1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-365a-5p
Interactor2: EPRS1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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