Detail Information

Basic Information:


  VIRBase ID:  

HHID00071162

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320d:           ZNF367:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320d ZNF367
miRBase
Accession/Entrez ID		 MIMAT0006764 195828
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - AFF29//CDC14B//ZFF29

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320d
rs1013069487 chr13:40727828    T/C
rs1212045422 chr13:40727836    ACC/A
rs1287962814 chr13:40727836    A/G
rs755131134 chr13:40727846    T/C
rs757049836 chr13:40727829    C/A
rs757049836 chr13:40727829    C/T
rs772990558 chr13:40727831    T/C
rs1441164440 chrX:140926173    C/G
rs1556096982 chrX:140926178    C/G
rs782742486 chrX:140926174    C/G
rs782742486 chrX:140926174    C/T
rs1371780032 chr13:40727825    TCATCCTCTCAACCCAGC/T
rs535778068 chr13:40727842    C/G
rs569951817 chr13:40727839    C/T
rs1330731340 chrX:140926183    C/G
rs1384057774 chrX:140926185    G/A
rs1422735584 chrX:140926184    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF367
chr9:99173428(-) A-I      intronic
chr9:99173359(-) A-I      intronic
chr9:99172527(-) A-I      intronic
chr9:99153042(-) A-I      intronic
chr9:99172485(-) A-I      intronic
chr9:99172397(-) A-I      intronic
chr9:99172396(-) A-I      intronic
chr9:99153066(-) A-I      intronic
chr9:99172328(-) A-I      intronic
chr9:99169118(-) A-I      intronic
chr9:99159114(-) A-I      intronic
chr9:99169113(-) A-I      intronic
chr9:99169078(-) A-I      intronic
chr9:99165523(-) A-I      intronic
chr9:99165434(-) A-I      intronic
chr9:99165422(-) A-I      intronic
chr9:99165392(-) A-I      intronic
chr9:99165390(-) A-I      intronic
chr9:99163900(-) A-I      intronic
chr9:99163863(-) A-I      intronic
chr9:99163853(-) A-I      intronic
chr9:99163839(-) A-I      intronic
chr9:99163770(-) A-I      intronic
chr9:99178168(-) A-I      intronic
chr9:99163686(-) A-I      intronic
chr9:99162669(-) A-I      intronic
chr9:99162656(-) A-I      intronic
chr9:99153140(-) A-I      intronic
chr9:99174242(-) A-I      intronic
chr9:99153071(-) A-I      intronic
chr9:99153022(-) A-I      intronic
chr9:99152390(-) A-I      intronic
chr9:99152150(-) A-I      intronic
chr9:99152115(-) A-I      intronic
chr9:99174221(-) A-I      intronic
chr9:99174207(-) A-I      intronic
chr9:99174202(-) A-I      intronic
chr9:99174206(-) A-I      intronic
chr9:99152921(-) A-I      intronic
chr9:99152961(-) A-I      intronic
chr9:99152900(-) A-I      intronic
chr9:99152948(-) A-I      intronic
chr9:99152341(-) A-I      intronic
chr9:99178281(-) A-I      intronic
chr9:99165327(-) A-I      intronic
chr9:99165384(-) A-I      intronic
chr9:99153083(-) A-I      intronic
chr9:99162588(-) A-I      intronic
chr9:99152332(-) A-I      intronic
chr9:99174248(-) A-I      intronic
chr9:99169351(-) A-I      intronic
chr9:99152963(-) A-I      intronic
chr9:99165420(-) A-I      intronic
chr9:99152406(-) A-I      intronic
chr9:99152425(-) A-I      intronic
chr9:99173420(-) A-I      intronic
chr9:99178148(-) A-I      intronic
chr9:99152456(-) A-I      intronic
chr9:99151578(-) A-I      intronic
chr9:99152306(-) A-I      intronic
chr9:99173262(-) A-I      intronic
chr9:99165445(-) A-I      intronic
chr9:99153113(-) A-I      intronic
chr9:99165043(-) A-I      intronic
chr9:99152168(-) A-I      intronic
chr9:99153125(-) A-I      intronic
chr9:99151410(-) A-I      intronic
chr9:99160743(-) A-I      intronic
chr9:99165027(-) A-I      intronic
chr9:99178283(-) A-I      intronic
chr9:99166687(-) A-I      intronic
chr9:99153000(-) A-I      intronic
chr9:99152903(-) A-I      intronic
chr9:99152152(-) A-I      intronic
chr9:99173077(-) A-I      intronic
chr9:99165363(-) A-I      intronic
chr9:99152279(-) A-I      intronic
chr9:99165309(-) A-I      intronic
chr9:99165541(-) A-I      intronic
chr9:99162589(-) A-I      intronic
chr9:99151579(-) A-I      intronic
chr9:99152962(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF367
chr9:99152152(-) A-G intron -    22484847
chr9:99152909(-) A-G intron -    22484847
chr9:99152948(-) A-G intron -    22484847
chr9:99152949(-) A-G intron -    22484847
chr9:99152962(-) A-G intron -    22484847
chr9:99152963(-) A-G intron -    22484847
chr9:99162588(-) A-G intron -    22484847
chr9:99162589(-) A-G intron -    22484847
chr9:99162592(-) A-G intron -    22484847
chr9:99170102(-) T-C intron -    22484847
chr9:99170123(-) A-G intron -    22484847
chr9:99170124(-) G-C intron -    22484847
chr9:99170154(-) G-A intron -    22484847
chr9:99173586(-) A-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF367
chr9:99149101-99149102(-) m6A 3'UTR       27773535
chr9:99149964-99149965(-) m6A 3'UTR       27773535
chr9:99150083-99150084(-) m6A 3'UTR       27773535
chr9:99150143-99150144(-) m6A 3'UTR       27773535
chr9:99150176-99150177(-) m6A 3'UTR       27773535//22608085
chr9:99150191-99150192(-) m6A 3'UTR       27773535//22608085
chr9:99150274-99150275(-) m6A 3'UTR       24981863//27773535//22608085
chr9:99150296-99150297(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr9:99150358-99150359(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:99150512-99150513(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:99150663-99150664(-) m6A CDS       24284625//24209618//24981863//27371828//22575960//22608085
chr9:99154723-99154724(-) m6A CDS       27773535//27371828
chr9:99154736-99154737(-) m6A CDS       27773535//27371828
chr9:99154790-99154791(-) m6A CDS       27773535//27371828
chr9:99157126-99157127(-) m6A CDS       27773535//27371828
chr9:99157155-99157156(-) m6A CDS       27773535//27371828
chr9:99180279-99180280(-) m6A CDS       24209618//27371828//27773536
chr9:99180407-99180408(-) m6A 5'UTR       24209618//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320d
Exosome Pooled sera     27278097
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Plasma     23663360
Exosome Breast cancer cell lines (MCF-7|MDA-MB-231)     24468161
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
ZNF367
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-320d
Eloxatine 5310940 Drug interaction    RC00007888
5-Fluorouracil 3385 Drug interaction    RC00007885
Doxorubicin 31703 Drug interaction    RC00007886
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007884
Docetaxel 148124 Drug interaction    RC00007887
Marine fungal metabolite 1386A - Drug interaction    RC00007889
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-320d
Topotecan       60700
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320d
Interactor2: ZNF367

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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