Detail Information

Basic Information:


  VIRBase ID:  

HHID00071100

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320d:           RGS10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320d RGS10
miRBase
Accession/Entrez ID		 MIMAT0006764 6001
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320d
rs1013069487 chr13:40727828    T/C
rs1212045422 chr13:40727836    ACC/A
rs1287962814 chr13:40727836    A/G
rs755131134 chr13:40727846    T/C
rs757049836 chr13:40727829    C/A
rs757049836 chr13:40727829    C/T
rs772990558 chr13:40727831    T/C
rs1441164440 chrX:140926173    C/G
rs1556096982 chrX:140926178    C/G
rs782742486 chrX:140926174    C/G
rs782742486 chrX:140926174    C/T
rs1371780032 chr13:40727825    TCATCCTCTCAACCCAGC/T
rs535778068 chr13:40727842    C/G
rs569951817 chr13:40727839    C/T
rs1330731340 chrX:140926183    C/G
rs1384057774 chrX:140926185    G/A
rs1422735584 chrX:140926184    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RGS10
chr10:121288222(-) A-I      intronic
chr10:121288224(-) A-I      intronic
chr10:121278355(-) A-I      intronic
chr10:121278381(-) A-I      intronic
chr10:121274052(-) A-I      intronic
chr10:121287610(-) A-I      intronic
chr10:121282517(-) A-I      intronic
chr10:121268518(-) A-I      intronic
chr10:121288201(-) A-I      intronic
chr10:121288237(-) A-I      intronic
chr10:121274083(-) A-I      intronic
chr10:121273944(-) A-I      intronic
chr10:121282014(-) A-I      intronic
chr10:121287722(-) A-I      intronic
chr10:121273787(-) A-I      intronic
chr10:121274094(-) A-I      intronic
chr10:121273978(-) A-I      intronic
chr10:121273987(-) A-I      intronic
chr10:121274046(-) A-I      intronic
chr10:121287600(-) A-I      intronic
chr10:121266381(-) A-I      intronic
chr10:121273786(-) A-I      intronic
chr10:121287739(-) A-I      intronic
chr10:121278331(-) A-I      intronic
chr10:121273747(-) A-I      intronic
chr10:121272188(-) A-I      intronic
chr10:121268933(-) A-I      intronic
chr10:121278313(-) A-I      intronic
chr10:121271095(-) A-I      intronic
chr10:121266377(-) A-I      intronic
chr10:121263839(-) A-I      intronic
chr10:121272915(-) A-I      intronic
chr10:121262833(-) A-I      intronic
chr10:121283170(-) A-I      intronic
chr10:121272197(-) A-I      intronic
chr10:121278345(-) A-I      intronic
chr10:121273952(-) A-I      intronic
chr10:121278464(-) A-I      intronic
chr10:121272220(-) A-I      intronic
chr10:121283171(-) A-I      intronic
chr10:121272235(-) A-I      intronic
chr10:121282985(-) A-I      intronic
chr10:121281006(-) A-I      intronic
chr10:121288714(-) A-I      intronic
chr10:121282933(-) A-I      intronic
chr10:121272890(-) A-I      intronic
chr10:121272237(-) A-I      intronic
chr10:121274007(-) A-I      intronic
chr10:121281043(-) A-I      intronic
chr10:121282959(-) A-I      intronic
chr10:121282932(-) A-I      intronic
chr10:121269067(-) A-I      intronic
chr10:121270328(-) A-I      intronic
chr10:121262800(-) A-I      intronic
chr10:121274113(-) A-I      intronic
chr10:121272248(-) A-I      intronic
chr10:121289518(-) A-I      intronic
chr10:121273990(-) A-I      intronic
chr10:121270414(-) A-I      intronic
chr10:121268994(-) A-I      intronic
chr10:121266416(-) A-I      intronic
chr10:121262696(-) A-I      intronic
chr10:121282012(-) A-I      intronic
chr10:121282581(-) A-I      intronic
chr10:121288730(-) A-I      intronic
chr10:121287680(-) A-I      intronic
chr10:121270913(-) A-I      intronic
chr10:121272333(-) A-I      intronic
chr10:121288857(-) A-I      intronic
chr10:121271084(-) A-I      intronic
chr10:121263816(-) A-I      intronic
chr10:121282506(-) A-I      intronic
chr10:121272200(-) A-I      intronic
chr10:121282474(-) A-I      intronic
chr10:121268485(-) A-I      intronic
chr10:121272233(-) A-I      intronic
chr10:121288189(-) A-I      intronic
chr10:121289541(-) A-I      intronic
chr10:121288183(-) A-I      intronic
chr10:121271036(-) A-I      intronic
chr10:121288111(-) A-I      intronic
chr10:121266406(-) A-I      intronic
chr10:121268417(-) A-I      intronic
chr10:121287769(-) A-I      intronic
chr10:121299877(-) A-I      intronic
chr10:121299901(-) A-I      intronic
chr10:121272877(-) A-I      intronic
chr10:121266395(-) A-I      intronic
chr10:121274048(-) A-I      intronic
chr10:121280987(-) A-I      intronic
chr10:121272341(-) A-I      intronic
chr10:121272349(-) A-I      intronic
chr10:121272889(-) A-I      intronic
chr10:121287736(-) A-I      intronic
chr10:121287710(-) A-I      intronic
chr10:121287635(-) A-I      intronic
chr10:121273788(-) A-I      intronic
chr10:121287632(-) A-I      intronic
chr10:121287615(-) A-I      intronic
chr10:121288208(-) A-I      intronic
chr10:121273913(-) A-I      intronic
chr10:121289384(-) A-I      intronic
chr10:121274087(-) A-I      intronic
chr10:121280638(-) A-I      intronic
chr10:121287816(-) A-I      intronic
chr10:121288126(-) A-I      intronic
chr10:121282975(-) A-I      intronic
chr10:121270886(-) A-I      intronic
chr10:121299887(-) A-I      intronic
chr10:121287628(-) A-I      intronic
chr10:121282960(-) A-I      intronic
chr10:121282602(-) A-I      intronic
chr10:121283095(-) A-I      intronic
chr10:121288935(-) A-I      intronic
chr10:121282425(-) A-I      intronic
chr10:121270320(-) A-I      intronic
chr10:121273953(-) A-I      intronic
chr10:121272259(-) A-I      intronic
chr10:121288127(-) A-I      intronic
chr10:121273904(-) A-I      intronic
chr10:121289552(-) A-I      intronic
chr10:121280774(-) A-I      intronic
chr10:121262627(-) A-I      intronic
chr10:121271069(-) A-I      intronic
chr10:121273998(-) A-I      intronic
chr10:121288337(-) A-I      intronic
chr10:121287681(-) A-I      intronic
chr10:121267347(-) A-I      intronic
chr10:121282491(-) A-I      intronic
chr10:121268692(-) A-I      intronic
chr10:121282513(-) A-I      intronic
chr10:121283055(-) A-I      intronic
chr10:121272292(-) A-I      intronic
chr10:121272311(-) A-I      intronic
chr10:121287683(-) A-I      intronic
chr10:121270883(-) A-I      intronic
chr10:121269020(-) A-I      intronic
chr10:121299830(-) A-I      intronic
chr10:121272158(-) A-I      intronic
chr10:121267706(-) A-I      intronic
chr10:121268653(-) A-I      intronic
chr10:121287721(-) A-I      intronic
chr10:121272310(-) A-I      intronic
chr10:121293645(-) A-I      intronic
chr10:121278490(-) A-I      intronic
chr10:121272332(-) A-I      intronic
chr10:121269101(-) A-I      intronic
chr10:121282423(-) A-I      intronic
chr10:121280776(-) A-I      intronic
chr10:121289557(-) A-I      intronic
chr10:121288191(-) A-I      intronic
chr10:121274058(-) A-I      intronic
chr10:121299841(-) A-I      intronic
chr10:121274088(-) A-I      intronic
chr10:121267784(-) A-I      intronic
chr10:121273973(-) A-I      intronic
chr10:121274107(-) A-I      intronic
chr10:121270968(-) A-I      intronic
chr10:121272255(-) A-I      intronic
chr10:121270948(-) A-I      intronic
chr10:121280917(-) A-I      intronic
chr10:121282067(-) A-I      intronic
chr10:121288114(-) A-I      intronic
chr10:121288263(-) A-I      intronic
chr10:121282424(-) A-I      intronic
chr10:121270316(-) A-I      intronic
chr10:121270988(-) A-I      intronic
chr10:121272157(-) A-I      intronic
chr10:121273922(-) A-I      intronic
chr10:121282479(-) A-I      intronic
chr10:121263840(-) A-I      intronic
chr10:121283115(-) A-I      intronic
chr10:121267787(-) A-I      intronic
chr10:121287815(-) A-I      intronic
chr10:121274123(-) A-I      intronic
chr10:121283052(-) A-I      intronic
chr10:121263338(-) A-I      intronic
chr10:121266439(-) A-I      intronic
chr10:121270874(-) A-I      intronic
chr10:121281986(-) A-I      intronic
chr10:121271044(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RGS10
chr10:121263338(-) A-I intron -    22327324
chr10:121274058(-) A-I intron -    22327324
chr10:121282513(-) A-I intron -    21960545
chr10:121282517(-) A-I intron -    21960545
chr10:121263338(-) A-G intron -    22484847
chr10:121270886(-) A-G intron -    22484847
chr10:121272158(-) A-G intron -    22484847
chr10:121274058(-) A-G intron -    22484847
chr10:121282424(-) A-G intron -    22484847
chr10:121282425(-) A-G intron -    22484847
chr10:121287680(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RGS10
chr10:121259353-121259354(-) m6A 3'UTR       27773535
chr10:121259382-121259383(-) m6A 3'UTR       27773535//22608085
chr10:121259404-121259405(-) m6A 3'UTR       24981863//27773535//22608085
chr10:121259515-121259516(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr10:121259530-121259531(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr10:121259568-121259569(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22608085
chr10:121259606-121259607(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr10:121259662-121259663(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr10:121259698-121259699(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//22608085
chr10:121259708-121259709(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//22608085
chr10:121274899-121274900(-) m6A exon//intron       24284625//27773535//22608085
chr10:121274921-121274922(-) m6A exon//intron       24284625//27773535
chr10:121274932-121274933(-) m6A exon//intron       24284625//27773535
chr10:121274946-121274947(-) m6A exon//intron       27773535
chr10:121275024-121275025(-) m6A CDS//intron       27773535
chr10:121275032-121275033(-) m6A CDS//intron       27773535
chr10:121286935-121286936(-) m6A CDS       -
chr10:121286949-121286950(-) m6A CDS//intron       -
chr10:121295991-121295992(-) m6A 5'UTR//intron       -
chr10:121296004-121296005(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320d
Exosome Pooled sera     27278097
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Plasma     23663360
Exosome Breast cancer cell lines (MCF-7|MDA-MB-231)     24468161
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
RGS10
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-320d
Eloxatine 5310940 Drug interaction    RC00007888
5-Fluorouracil 3385 Drug interaction    RC00007885
Doxorubicin 31703 Drug interaction    RC00007886
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007884
Docetaxel 148124 Drug interaction    RC00007887
Marine fungal metabolite 1386A - Drug interaction    RC00007889
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-320d
Topotecan       60700
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320d
Interactor2: RGS10

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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