Detail Information

Basic Information:


  VIRBase ID:  

HHID00071093

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320d:           MLLT3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320d MLLT3
miRBase
Accession/Entrez ID		 MIMAT0006764 4300
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - AF9//YEATS3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320d
rs1013069487 chr13:40727828    T/C
rs1212045422 chr13:40727836    ACC/A
rs1287962814 chr13:40727836    A/G
rs755131134 chr13:40727846    T/C
rs757049836 chr13:40727829    C/A
rs757049836 chr13:40727829    C/T
rs772990558 chr13:40727831    T/C
rs1441164440 chrX:140926173    C/G
rs1556096982 chrX:140926178    C/G
rs782742486 chrX:140926174    C/G
rs782742486 chrX:140926174    C/T
rs1371780032 chr13:40727825    TCATCCTCTCAACCCAGC/T
rs535778068 chr13:40727842    C/G
rs569951817 chr13:40727839    C/T
rs1330731340 chrX:140926183    C/G
rs1384057774 chrX:140926185    G/A
rs1422735584 chrX:140926184    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MLLT3
chr9:20572630(-) A-I      intronic
chr9:20572576(-) A-I      intronic
chr9:20572644(-) A-I      intronic
chr9:20572649(-) A-I      intronic
chr9:20525442(-) A-I      intronic
chr9:20517753(-) A-I      intronic
chr9:20517749(-) A-I      intronic
chr9:20517735(-) A-I      intronic
chr9:20517590(-) A-I      intronic
chr9:20453342(-) A-I      intronic
chr9:20506191(-) A-I      intronic
chr9:20506190(-) A-I      intronic
chr9:20506185(-) A-I      intronic
chr9:20499891(-) A-I      intronic
chr9:20453453(-) A-I      intronic
chr9:20453452(-) A-I      intronic
chr9:20453439(-) A-I      intronic
chr9:20517579(-) A-I      intronic
chr9:20572669(-) A-I      intronic
chr9:20572685(-) A-I      intronic
chr9:20573397(-) A-I      intronic
chr9:20579307(-) A-I      intronic
chr9:20374274(-) A-I      intronic
chr9:20374260(-) A-I      intronic
chr9:20374273(-) A-I      intronic
chr9:20453341(-) A-I      intronic
chr9:20453308(-) A-I      intronic
chr9:20439092(-) A-I      intronic
chr9:20423879(-) A-I      intronic
chr9:20423874(-) A-I      intronic
chr9:20423861(-) A-I      intronic
chr9:20404056(-) A-I      intronic
chr9:20389726(-) A-I      intronic
chr9:20389695(-) A-I      intronic
chr9:20614189(-) A-I      intronic
chr9:20556625(-) A-I      intronic
chr9:20389585(-) A-I      intronic
chr9:20389556(-) A-I      intronic
chr9:20374270(-) A-I      intronic
chr9:20374214(-) A-I      intronic
chr9:20370551(-) A-I      intronic
chr9:20370543(-) A-I      intronic
chr9:20533022(-) A-I      intronic
chr9:20547260(-) A-I      intronic
chr9:20534695(-) A-I      intronic
chr9:20534726(-) A-I      intronic
chr9:20534832(-) A-I      intronic
chr9:20546544(-) A-I      intronic
chr9:20547275(-) A-I      intronic
chr9:20547292(-) A-I      intronic
chr9:20547305(-) A-I      intronic
chr9:20547705(-) A-I      intronic
chr9:20547707(-) A-I      intronic
chr9:20547728(-) A-I      intronic
chr9:20547732(-) A-I      intronic
chr9:20547758(-) A-I      intronic
chr9:20549008(-) A-I      intronic
chr9:20549017(-) A-I      intronic
chr9:20549096(-) A-I      intronic
chr9:20556516(-) A-I      intronic
chr9:20556519(-) A-I      intronic
chr9:20556619(-) A-I      intronic
chr9:20572536(-) A-I      intronic
chr9:20547386(-) A-I      intronic
chr9:20558413(-) A-I      intronic
chr9:20375811(-) A-I      intronic
chr9:20374300(-) A-I      intronic
chr9:20483981(-) A-I      intronic
chr9:20542521(-) A-I      intronic
chr9:20375704(-) A-I      intronic
chr9:20544966(-) A-I      intronic
chr9:20544912(-) A-I      intronic
chr9:20576955(-) A-I      intronic
chr9:20545821(-) A-I      intronic
chr9:20547319(-) A-I      intronic
chr9:20456105(-) A-I      intronic
chr9:20453393(-) A-I      intronic
chr9:20547835(-) A-I      intronic
chr9:20548867(-) A-I      intronic
chr9:20573452(-) A-I      intronic
chr9:20548952(-) A-I      intronic
chr9:20545032(-) A-I      intronic
chr9:20550552(-) A-I      intronic
chr9:20375878(-) A-I      intronic
chr9:20573290(-) A-I      intronic
chr9:20573411(-) A-I      intronic
chr9:20521207(-) A-I      intronic
chr9:20572684(-) A-I      intronic
chr9:20595283(-) A-I      intronic
chr9:20547945(-) A-I      intronic
chr9:20591941(-) A-I      intronic
chr9:20485160(-) A-I      intronic
chr9:20403956(-) A-I      intronic
chr9:20545833(-) A-I      intronic
chr9:20548996(-) A-I      intronic
chr9:20573395(-) A-I      intronic
chr9:20522864(-) A-I      intronic
chr9:20550508(-) A-I      intronic
chr9:20423885(-) A-I      intronic
chr9:20572706(-) A-I      intronic
chr9:20542317(-) A-I      intronic
chr9:20543573(-) A-I      intronic
chr9:20595135(-) A-I      intronic
chr9:20548946(-) A-I      intronic
chr9:20374282(-) A-I      intronic
chr9:20545917(-) A-I      intronic
chr9:20521213(-) A-I      intronic
chr9:20547229(-) A-I      intronic
chr9:20573281(-) A-I      intronic
chr9:20423151(-) A-I      intronic
chr9:20375735(-) A-I      intronic
chr9:20573468(-) A-I      intronic
chr9:20521194(-) A-I      intronic
chr9:20370647(-) A-I      intronic
chr9:20525491(-) A-I      intronic
chr9:20573319(-) A-I      intronic
chr9:20548970(-) A-I      intronic
chr9:20456052(-) A-I      intronic
chr9:20544892(-) A-I      intronic
chr9:20522877(-) A-I      intronic
chr9:20573317(-) A-I      intronic
chr9:20404051(-) A-I      intronic
chr9:20521222(-) A-I      intronic
chr9:20544944(-) A-I      intronic
chr9:20423152(-) A-I      intronic
chr9:20547228(-) A-I      intronic
chr9:20423126(-) A-I      intronic
chr9:20548928(-) A-I      intronic
chr9:20549046(-) A-I      intronic
chr9:20453484(-) A-I      intronic
chr9:20375731(-) A-I      intronic
chr9:20404092(-) A-I      intronic
chr9:20573353(-) A-I      intronic
chr9:20573339(-) A-I      intronic
chr9:20545826(-) A-I      intronic
chr9:20531188(-) A-I      intronic
chr9:20544960(-) A-I      intronic
chr9:20572755(-) A-I      intronic
chr9:20423121(-) A-I      intronic
chr9:20573343(-) A-I      intronic
chr9:20545761(-) A-I      intronic
chr9:20456061(-) A-I      intronic
chr9:20544821(-) A-I      intronic
chr9:20573372(-) A-I      intronic
chr9:20573373(-) A-I      intronic
chr9:20374376(-) A-I      intronic
chr9:20589874(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MLLT3
chr9:20547319(-) A-G intron -    22484847
chr9:20573307(-) A-G intron -    22484847
chr9:20573372(-) A-G intron -    22484847
chr9:20573395(-) A-G intron -    22484847
chr9:20573411(-) A-G intron -    22484847
chr9:20589874(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MLLT3
chr9:20344999-20345000(-) m6A 3'UTR       22608085
chr9:20345061-20345062(-) m6A 3'UTR       22608085
chr9:20345463-20345464(-) m6A 3'UTR//exon       27773535
chr9:20345629-20345630(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20345637-20345638(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20345646-20345647(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20345707-20345708(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20345796-20345797(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr9:20345818-20345819(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr9:20345983-20345984(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:20346133-20346134(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22575960//22608085
chr9:20346148-20346149(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22575960//22608085
chr9:20346157-20346158(-) m6A 3'UTR//exon       22575960
chr9:20346161-20346162(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22608085
chr9:20346217-20346218(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr9:20346231-20346232(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr9:20346298-20346299(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20346341-20346342(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20346413-20346414(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr9:20346448-20346449(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr9:20346457-20346458(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr9:20346476-20346477(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr9:20346490-20346491(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr9:20346495-20346496(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//22608085
chr9:20346528-20346529(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr9:20346545-20346546(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr9:20346550-20346551(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22575960//22608085
chr9:20346564-20346565(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22575960//22608085
chr9:20353537-20353538(-) m6A CDS//exon//intron       24284625//24981863//28052920//27773535//22575960//22608085
chr9:20353579-20353580(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22575960//22608085
chr9:20360753-20360754(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535
chr9:20360775-20360776(-) m6A CDS//exon//intron       24284625//24981863//26404942//27773535
chr9:20362737-20362738(-) m6A exon//intron       27773535
chr9:20365678-20365679(-) m6A 5'UTR//CDS//exon//intron       28052920//27773535
chr9:20365736-20365737(-) m6A 5'UTR//CDS//exon//intron       28052920//27773535
chr9:20380210-20380211(-) m6A exon//intron       28052920//27773535
chr9:20380249-20380250(-) m6A exon//intron       27773535
chr9:20380313-20380314(-) m6A exon//intron       27773535
chr9:20413813-20413814(-) m6A 5'UTR//CDS//exon       24284625//26404942//27773535//22608085
chr9:20413868-20413869(-) m6A 5'UTR//CDS//exon       24284625//24981863//26404942//27773535//27371828//22608085
chr9:20413967-20413968(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr9:20414018-20414019(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085
chr9:20414051-20414052(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//27773535//27371828//22608085
chr9:20414072-20414073(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr9:20414078-20414079(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr9:20414123-20414124(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:20414138-20414139(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:20414183-20414184(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:20414204-20414205(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr9:20414214-20414215(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr9:20414225-20414226(-) m6A 5'UTR//CDS//exon       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr9:20620779-20620780(-) m6A 5'UTR//CDS//exon       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320d
Exosome Pooled sera     27278097
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Plasma     23663360
Exosome Breast cancer cell lines (MCF-7|MDA-MB-231)     24468161
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Fibroblasts|Mesenchymal stem cells     -
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
MLLT3
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-320d
Eloxatine 5310940 Drug interaction    RC00007888
5-Fluorouracil 3385 Drug interaction    RC00007885
Doxorubicin 31703 Drug interaction    RC00007886
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007884
Docetaxel 148124 Drug interaction    RC00007887
Marine fungal metabolite 1386A - Drug interaction    RC00007889
Resource Symbol Drug Name PubChem ID
RNAactDrug hsa-miR-320d
Topotecan       60700
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320d
Interactor2: MLLT3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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