Detail Information

Basic Information:


  VIRBase ID:  

HHID00071076

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1307-3p RPS11P5
miRBase
Accession/Entrez ID		 MIMAT0005951 727826
Organism Homo sapiens Homo sapiens
Category miRNA pseudo
Alias - RPS11_3_1298

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1307-3p
rs1426092734 chr10:103394310    C/CG
rs1481938984 chr10:103394311    G/A
rs752363844 chr10:103394304    G/A
rs752363844 chr10:103394304    G/C
rs757783218 chr10:103394308    G/A
rs757783218 chr10:103394308    G/C
rs757783218 chr10:103394308    G/T
rs777377534 chr10:103394310    C/T
rs1447713037 chr10:103394316    G/A
rs1485064361 chr10:103394319    G/A
rs774451000 chr10:103394315    C/A
rs774451000 chr10:103394315    C/G
rs774451000 chr10:103394315    C/T
rs781103034 chr10:103394321    G/A
rs953336177 chr10:103394318    C/A
rs953336177 chr10:103394318    C/T

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1307-3p
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Plasma     29130611
Exosome Plasma     23663360
Exosome Endothelial cells|Epithelial cells|Lymphoma tissue     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleolus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
RPS11P5
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-1307-3p
Gemcitabine 60750 Drug interaction    RC00007862
5-Fluorouracil 3385 Drug interaction    RC00007861
cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007860
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-1307-3p
Cisplatin 5702198       26676926

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1307-3p
Interactor2: RPS11P5

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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