Basic Information:
VIRBase ID: HHID00071036
Virus: Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)
Host: Homo sapiens
Confidence Score: 0.4752
Interaction Type: Host-Host interaction
RNA Editing:
Resource
Symbol
Editing Position
Change
Genetic Region
RADAR
PDCD4
Resource
Symbol
Editing Position
Change
SeqReg
exReg
PMID
DARNED
PDCD4
RNA Modification:
Resource
Symbol
ModificationPosition
Type
Genomic Context
PMID
RMBase
PDCD4
RNA Localization:
Resource
Symbol
Subcellular Localization
Tissue or Cell Line
PMID
RNALocate
PDCD4
Related Drug Information:
Resource
Symbol
Drug Name
PubChem ID
Function
Link
RNAInter
hsa-miR-1280
Resource
Symbol
Drug Name
PubChem ID
RNAactDrug
hsa-miR-1280
Interaction Network (The top 100 interactions) :
Interactor1: hsa-miR-1280
Interactor2: PDCD4
Evidence Support:
Weak-Evidence
PAR-CLIP
Support Database
ViRBase
References:
PMID
22291592
Target region
3'UTR
Source
ViRBase
Interactor1 expression
None
Tissue or cell line
EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells
Interactor2 expression
None
Description
We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.