Detail Information

Basic Information:


  VIRBase ID:  

HHID00070837

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1277-3p:           N4BP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1277-3p N4BP1
miRBase
Accession/Entrez ID		 MIMAT0005933 9683
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1277-3p
rs1314558247 chrX:118386454    T/C
rs1401463031 chrX:118386451    A/G
rs1415304019 chrX:118386453    A/G
rs747921534 chrX:118386449    A/G
rs759040197 chrX:118386457    AT/A
rs777048487 chrX:118386450    T/C
rs1160189721 chrX:118386443    G/A
rs1184902110 chrX:118386443    GTAGA/G
rs1298186191 chrX:118386446    G/GAT
rs770130422 chrX:118386442    C/T
rs778901514 chrX:118386447    A/C
rs778901514 chrX:118386447    A/G
rs778901514 chrX:118386447    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR N4BP1
chr16:48628556(-) A-I      intronic
chr16:48635651(-) A-I      intronic
chr16:48604949(-) A-I      intronic
chr16:48618603(-) A-I      intronic
chr16:48619880(-) A-I      intronic
chr16:48619896(-) A-I      intronic
chr16:48579692(-) A-I      intronic
chr16:48627710(-) A-I      intronic
chr16:48627789(-) A-I      intronic
chr16:48579937(-) A-I      intronic
chr16:48604840(-) A-I      intronic
chr16:48579674(-) A-I      intronic
chr16:48578972(-) A-I      intronic
chr16:48579389(-) A-I      intronic
chr16:48579402(-) A-I      intronic
chr16:48628534(-) A-I      intronic
chr16:48628430(-) A-I      intronic
chr16:48641984(-) A-I      intronic
chr16:48638244(-) A-I      intronic
chr16:48638243(-) A-I      intronic
chr16:48579013(-) A-I      intronic
chr16:48635859(-) A-I      intronic
chr16:48635714(-) A-I      intronic
chr16:48579045(-) A-I      intronic
chr16:48579122(-) A-I      intronic
chr16:48635673(-) A-I      intronic
chr16:48597171(-) A-I      intronic
chr16:48603346(-) A-I      intronic
chr16:48604422(-) A-I      intronic
chr16:48604506(-) A-I      intronic
chr16:48604507(-) A-I      intronic
chr16:48604818(-) A-I      intronic
chr16:48604819(-) A-I      intronic
chr16:48604896(-) A-I      intronic
chr16:48579143(-) A-I      intronic
chr16:48604906(-) A-I      intronic
chr16:48604916(-) A-I      intronic
chr16:48604934(-) A-I      intronic
chr16:48579359(-) A-I      intronic
chr16:48629138(-) A-I      intronic
chr16:48638205(-) A-I      intronic
chr16:48628509(-) A-I      intronic
chr16:48579259(-) A-I      intronic
chr16:48642187(-) A-I      intronic
chr16:48579069(-) A-I      intronic
chr16:48606812(-) A-I      intronic
chr16:48643122(-) A-I      intronic
chr16:48641901(-) A-I      intronic
chr16:48636782(-) A-I      intronic
chr16:48638407(-) A-I      intronic
chr16:48638342(-) A-I      intronic
chr16:48643074(-) A-I      intronic
chr16:48636799(-) A-I      intronic
chr16:48579426(-) A-I      intronic
chr16:48643043(-) A-I      intronic
chr16:48579450(-) A-I      intronic
chr16:48627718(-) A-I      intronic
chr16:48578930(-) A-I      intronic
chr16:48619382(-) A-I      intronic
chr16:48639040(-) A-I      intronic
chr16:48638217(-) A-I      intronic
chr16:48579365(-) A-I      intronic
chr16:48579771(-) A-I      intronic
chr16:48619376(-) A-I      intronic
chr16:48628351(-) A-I      intronic
chr16:48628403(-) A-I      intronic
chr16:48643004(-) A-I      intronic
chr16:48635746(-) A-I      intronic
chr16:48603431(-) A-I      intronic
chr16:48579745(-) A-I      intronic
chr16:48579079(-) A-I      intronic
chr16:48579481(-) A-I      intronic
chr16:48639214(-) A-I      intronic
chr16:48639012(-) A-I      intronic
chr16:48619844(-) A-I      intronic
chr16:48616945(-) A-I      intronic
chr16:48638352(-) A-I      intronic
chr16:48628386(-) A-I      intronic
chr16:48579293(-) A-I      intronic
chr16:48639082(-) A-I      intronic
chr16:48639011(-) A-I      intronic
chr16:48643031(-) A-I      intronic
chr16:48635883(-) A-I      intronic
chr16:48579488(-) A-I      intronic
chr16:48641869(-) A-I      intronic
chr16:48635875(-) A-I      intronic
chr16:48643010(-) A-I      intronic
chr16:48638264(-) A-I      intronic
chr16:48628363(-) A-I      intronic
chr16:48579148(-) A-I      intronic
chr16:48627813(-) A-I      intronic
chr16:48641905(-) A-I      intronic
chr16:48619289(-) A-I      intronic
chr16:48627830(-) A-I      intronic
chr16:48628542(-) A-I      intronic
chr16:48579855(-) A-I      intronic
chr16:48639137(-) A-I      intronic
chr16:48607497(-) A-I      intronic
chr16:48642000(-) A-I      intronic
chr16:48579367(-) A-I      intronic
chr16:48579843(-) A-I      intronic
chr16:48636121(-) A-I      intronic
chr16:48579354(-) A-I      intronic
chr16:48639136(-) A-I      intronic
chr16:48579932(-) A-I      intronic
chr16:48578905(-) A-I      intronic
chr16:48579403(-) A-I      intronic
chr16:48638355(-) A-I      intronic
chr16:48628485(-) A-I      intronic
chr16:48627801(-) A-I      intronic
chr16:48607337(-) A-I      intronic
chr16:48628406(-) A-I      intronic
chr16:48578978(-) A-I      intronic
chr16:48579774(-) A-I      intronic
chr16:48619801(-) A-I      intronic
chr16:48579113(-) A-I      intronic
chr16:48636861(-) A-I      intronic
chr16:48579905(-) A-I      intronic
chr16:48579734(-) A-I      intronic
chr16:48636842(-) A-I      intronic
chr16:48606838(-) A-I      intronic
chr16:48639016(-) A-I      intronic
chr16:48579901(-) A-I      intronic
chr16:48639032(-) A-I      intronic
chr16:48627994(-) A-I      intronic
chr16:48579118(-) A-I      intronic
chr16:48638265(-) A-I      intronic
chr16:48579236(-) A-I      intronic
chr16:48629211(-) A-I      intronic
chr16:48641911(-) A-I      intronic
chr16:48639081(-) A-I      intronic
chr16:48579014(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED N4BP1
chr16:48638265(-) A-G intron -    22484847
chr16:48638407(-) A-G intron -    22484847
chr16:48639081(-) A-G intron -    22484847
chr16:48639082(-) A-G intron -    22484847
chr16:48642000(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase N4BP1
chr16:48576510-48576511(-) m6A 3'UTR       27773535
chr16:48576562-48576563(-) m6A 3'UTR       27773535
chr16:48576651-48576652(-) m6A 3'UTR       24981863//27773535
chr16:48576720-48576721(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr16:48576735-48576736(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr16:48576768-48576769(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr16:48576881-48576882(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48576892-48576893(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48576945-48576946(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:48576980-48576981(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:48580024-48580025(-) m6A exon//intron       27773535
chr16:48587502-48587503(-) m6A CDS//exon       27773535
chr16:48594699-48594700(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:48594720-48594721(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:48594810-48594811(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:48594960-48594961(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr16:48595088-48595089(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595096-48595097(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595114-48595115(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595120-48595121(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595140-48595141(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:48595146-48595147(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:48595160-48595161(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:48595197-48595198(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr16:48595265-48595266(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr16:48595328-48595329(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595337-48595338(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595372-48595373(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595425-48595426(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595437-48595438(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr16:48595487-48595488(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:48595498-48595499(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:48595532-48595533(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:48595610-48595611(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:48595798-48595799(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48595806-48595807(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48595829-48595830(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595865-48595866(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595916-48595917(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595958-48595959(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595998-48595999(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596047-48596048(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596070-48596071(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596116-48596117(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596212-48596213(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48596296-48596297(-) m6A 5'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr16:48596325-48596326(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:48596331-48596332(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1277-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
N4BP1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1277-3p
Interactor2: N4BP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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