Detail Information

Basic Information:


  VIRBase ID:  

HHID00070831

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1277-3p:           SSR1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1277-3p SSR1
miRBase
Accession/Entrez ID		 MIMAT0005933 6745
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - TRAPA

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1277-3p
rs1314558247 chrX:118386454    T/C
rs1401463031 chrX:118386451    A/G
rs1415304019 chrX:118386453    A/G
rs747921534 chrX:118386449    A/G
rs759040197 chrX:118386457    AT/A
rs777048487 chrX:118386450    T/C
rs1160189721 chrX:118386443    G/A
rs1184902110 chrX:118386443    GTAGA/G
rs1298186191 chrX:118386446    G/GAT
rs770130422 chrX:118386442    C/T
rs778901514 chrX:118386447    A/C
rs778901514 chrX:118386447    A/G
rs778901514 chrX:118386447    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SSR1
chr6:7277503(-) A-I      intronic
chr6:7277504(-) A-I      intronic
chr6:7291549(-) A-I      intronic
chr6:7292788(-) A-I      intronic
chr6:7292818(-) A-I      intronic
chr6:7292870(-) A-I      intronic
chr6:7293707(-) A-I      intronic
chr6:7293919(-) A-I      intronic
chr6:7293920(-) A-I      intronic
chr6:7299740(-) A-I      intronic
chr6:7299849(-) A-I      intronic
chr6:7299921(-) A-I      intronic
chr6:7300952(-) A-I      intronic
chr6:7301054(-) A-I      intronic
chr6:7301058(-) A-I      intronic
chr6:7277490(-) A-I      intronic
chr6:7277488(-) A-I      intronic
chr6:7277480(-) A-I      intronic
chr6:7301132(-) A-I      intronic
chr6:7301165(-) A-I      intronic
chr6:7306481(-) A-I      intronic
chr6:7306508(-) A-I      intronic
chr6:7306514(-) A-I      intronic
chr6:7277809(-) A-I      intronic
chr6:7270609(-) A-I      intronic
chr6:7271742(-) A-I      intronic
chr6:7299766(-) A-I      intronic
chr6:7276760(-) A-I      intronic
chr6:7276693(-) A-I      intronic
chr6:7277472(-) A-I      intronic
chr6:7277189(-) A-I      intronic
chr6:7277629(-) A-I      intronic
chr6:7277721(-) A-I      intronic
chr6:7277722(-) A-I      intronic
chr6:7277790(-) A-I      intronic
chr6:7277791(-) A-I      intronic
chr6:7277797(-) A-I      intronic
chr6:7277807(-) A-I      intronic
chr6:7278736(-) A-I      intronic
chr6:7278745(-) A-I      intronic
chr6:7278772(-) A-I      intronic
chr6:7278824(-) A-I      intronic
chr6:7278825(-) A-I      intronic
chr6:7278843(-) A-I      intronic
chr6:7278903(-) A-I      intronic
chr6:7278910(-) A-I      intronic
chr6:7279502(-) A-I      intronic
chr6:7279556(-) A-I      intronic
chr6:7279578(-) A-I      intronic
chr6:7279581(-) A-I      intronic
chr6:7279623(-) A-I      intronic
chr6:7279633(-) A-I      intronic
chr6:7279645(-) A-I      intronic
chr6:7280987(-) A-I      intronic
chr6:7281010(-) A-I      intronic
chr6:7281040(-) A-I      intronic
chr6:7281049(-) A-I      intronic
chr6:7281093(-) A-I      intronic
chr6:7281103(-) A-I      intronic
chr6:7281118(-) A-I      intronic
chr6:7281179(-) A-I      intronic
chr6:7291246(-) A-I      intronic
chr6:7291255(-) A-I      intronic
chr6:7291440(-) A-I      intronic
chr6:7285664(-) A-I      3'UTR
chr6:7286953(-) A-I      3'UTR
chr6:7286987(-) A-I      3'UTR
chr6:7286995(-) A-I      3'UTR
chr6:7286996(-) A-I      3'UTR
chr6:7287032(-) A-I      3'UTR
chr6:7286923(-) A-I      3'UTR
chr6:7285725(-) A-I      3'UTR
chr6:7283617(-) A-I      3'UTR
chr6:7287059(-) A-I      3'UTR
chr6:7283445(-) A-I      3'UTR
chr6:7283468(-) A-I      3'UTR
chr6:7283480(-) A-I      3'UTR
chr6:7283484(-) A-I      3'UTR
chr6:7283485(-) A-I      3'UTR
chr6:7283502(-) A-I      3'UTR
chr6:7283512(-) A-I      3'UTR
chr6:7283532(-) A-I      3'UTR
chr6:7283545(-) A-I      3'UTR
chr6:7283370(-) A-I      3'UTR
chr6:7283373(-) A-I      3'UTR
chr6:7283380(-) A-I      3'UTR
chr6:7283381(-) A-I      3'UTR
chr6:7283409(-) A-I      3'UTR
chr6:7283428(-) A-I      3'UTR
chr6:7283450(-) A-I      3'UTR
chr6:7283451(-) A-I      3'UTR
chr6:7283477(-) A-I      3'UTR
chr6:7283650(-) A-I      3'UTR
chr6:7283655(-) A-I      3'UTR
chr6:7283656(-) A-I      3'UTR
chr6:7283662(-) A-I      3'UTR
chr6:7283674(-) A-I      3'UTR
chr6:7285803(-) A-I      3'UTR
chr6:7283712(-) A-I      3'UTR
chr6:7283744(-) A-I      3'UTR
chr6:7283492(-) A-I      3'UTR
chr6:7283746(-) A-I      3'UTR
chr6:7283515(-) A-I      3'UTR
chr6:7283547(-) A-I      3'UTR
chr6:7283612(-) A-I      3'UTR
chr6:7283747(-) A-I      3'UTR
chr6:7283626(-) A-I      3'UTR
chr6:7283761(-) A-I      3'UTR
chr6:7283644(-) A-I      3'UTR
chr6:7283771(-) A-I      3'UTR
chr6:7283789(-) A-I      3'UTR
chr6:7283483(-) A-I      3'UTR
chr6:7283792(-) A-I      3'UTR
chr6:7283796(-) A-I      3'UTR
chr6:7283808(-) A-I      3'UTR
chr6:7283832(-) A-I      3'UTR
chr6:7285728(-) A-I      3'UTR
chr6:7283647(-) A-I      3'UTR
chr6:7283648(-) A-I      3'UTR
chr6:7283673(-) A-I      3'UTR
chr6:7283699(-) A-I      3'UTR
chr6:7283719(-) A-I      3'UTR
chr6:7283730(-) A-I      3'UTR
chr6:7283753(-) A-I      3'UTR
chr6:7283786(-) A-I      3'UTR
chr6:7283793(-) A-I      3'UTR
chr6:7283802(-) A-I      3'UTR
chr6:7283807(-) A-I      3'UTR
chr6:7283817(-) A-I      3'UTR
chr6:7283830(-) A-I      3'UTR
chr6:7283841(-) A-I      3'UTR
chr6:7283851(-) A-I      3'UTR
chr6:7283881(-) A-I      3'UTR
chr6:7283886(-) A-I      3'UTR
chr6:7283895(-) A-I      3'UTR
chr6:7285658(-) A-I      3'UTR
chr6:7285691(-) A-I      3'UTR
chr6:7285704(-) A-I      3'UTR
chr6:7285830(-) A-I      3'UTR
chr6:7285705(-) A-I      3'UTR
chr6:7285717(-) A-I      3'UTR
chr6:7285692(-) A-I      3'UTR
chr6:7285788(-) A-I      3'UTR
chr6:7285790(-) A-I      3'UTR
chr6:7285800(-) A-I      3'UTR
chr6:7285878(-) A-I      3'UTR
chr6:7286886(-) A-I      3'UTR
chr6:7286901(-) A-I      3'UTR
chr6:7286921(-) A-I      3'UTR
chr6:7301069(-) A-I      intronic
chr6:7279904(-) A-I      intronic
chr6:7271652(-) A-I      intronic
chr6:7313987(-) A-I      intronic
chr6:7277658(-) A-I      intronic
chr6:7299791(-) A-I      intronic
chr6:7313995(-) A-I      intronic
chr6:7299848(-) A-I      intronic
chr6:7304071(-) A-I      intronic
chr6:7278755(-) A-I      intronic
chr6:7286900(-) A-I      3'UTR
chr6:7287062(-) A-I      3'UTR
chr6:7285829(-) A-I      3'UTR
chr6:7283653(-) A-I      3'UTR
chr6:7283415(-) A-I      3'UTR
chr6:7283658(-) A-I      3'UTR
chr6:7287044(-) A-I      3'UTR
chr6:7285742(-) A-I      3'UTR
chr6:7286981(-) A-I      3'UTR
chr6:7283679(-) A-I      3'UTR
chr6:7283910(-) A-I      3'UTR
chr6:7283618(-) A-I      3'UTR
chr6:7287022(-) A-I      3'UTR
chr6:7283659(-) A-I      3'UTR
chr6:7283657(-) A-I      3'UTR
chr6:7283552(-) A-I      3'UTR
chr6:7283578(-) A-I      3'UTR
chr6:7299769(-) A-I      intronic
chr6:7270800(-) A-I      intronic
chr6:7275719(-) A-I      intronic
chr6:7310581(-) A-I      intronic
chr6:7274765(-) A-I      intronic
chr6:7291548(-) A-I      intronic
chr6:7271903(-) A-I      intronic
chr6:7271664(-) A-I      intronic
chr6:7304098(-) A-I      intronic
chr6:7299831(-) A-I      intronic
chr6:7276765(-) A-I      intronic
chr6:7310563(-) A-I      intronic
chr6:7275757(-) A-I      intronic
chr6:7314022(-) A-I      intronic
chr6:7314028(-) A-I      intronic
chr6:7280998(-) A-I      intronic
chr6:7279501(-) A-I      intronic
chr6:7307963(-) A-I      intronic
chr6:7301157(-) A-I      intronic
chr6:7306473(-) A-I      intronic
chr6:7291256(-) A-I      intronic
chr6:7301167(-) A-I      intronic
chr6:7306472(-) A-I      intronic
chr6:7306649(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SSR1
chr6:7283578(-) A-I exon 3'UTR    22327324
chr6:7284962(-) G-A exon 3'UTR    21725310
chr6:7286900(-) A-G exon 3'UTR    21725310
chr6:7298174(-) A-C exon CDS    21725310
chr6:7299831(-) A-G intron -    22484847
chr6:7301167(-) A-G intron -    22484847
chr6:7302827(-) G-A intron -    22484847
chr6:7306472(-) A-G intron -    22484847
chr6:7306473(-) A-G intron -    22484847
chr6:7310563(-) A-G intron -    22484847
chr6:7310581(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SSR1
chr6:7268696-7268697(-) m6A 3'UTR       -
chr6:7268716-7268717(-) m6A 3'UTR       -
chr6:7268787-7268788(-) m6A 3'UTR       25456834
chr6:7268844-7268845(-) m6A 3'UTR       25456834//27371828
chr6:7268928-7268929(-) m6A 3'UTR       25456834//27773535//27371828
chr6:7269004-7269005(-) m6A 3'UTR       25456834//27773535//27371828//22608085
chr6:7269013-7269014(-) m6A 3'UTR       25456834//27773535//27371828//22608085
chr6:7269067-7269068(-) m6A 3'UTR       27773535
chr6:7269206-7269207(-) m6A 3'UTR//exon       -
chr6:7269213-7269214(-) m6A 3'UTR//exon       -
chr6:7269252-7269253(-) m6A 3'UTR//exon       -
chr6:7282035-7282036(-) m6A 3'UTR//intron       27773535
chr6:7282110-7282111(-) m6A 3'UTR//intron       27773535
chr6:7282351-7282352(-) m6A 3'UTR//intron       27773535
chr6:7283264-7283265(-) m6A 3'UTR//intron       24981863//27773535
chr6:7283269-7283270(-) m6A 3'UTR//intron       24981863//27773535
chr6:7283339-7283340(-) m6A 3'UTR//intron       24981863//27773535
chr6:7283408-7283409(-) m6A 3'UTR//intron       24981863//27773535
chr6:7283482-7283483(-) m6A 3'UTR//intron       24981863
chr6:7283488-7283489(-) m6A 3'UTR//intron       24981863
chr6:7283506-7283507(-) m6A 3'UTR//intron       -
chr6:7283575-7283576(-) m6A 3'UTR//intron       -
chr6:7288134-7288135(-) m6A 3'UTR//exon//intron       26404942
chr6:7288142-7288143(-) m6A 3'UTR//exon//intron       26404942
chr6:7288679-7288680(-) m6A 3'UTR//intron       24981863
chr6:7288696-7288697(-) m6A 3'UTR//intron       24981863
chr6:7288732-7288733(-) m6A 3'UTR//intron       24981863
chr6:7288740-7288741(-) m6A 3'UTR//intron       24981863
chr6:7289812-7289813(-) m6A 3'UTR//intron       22575960
chr6:7289822-7289823(-) m6A 3'UTR//intron       22575960
chr6:7289872-7289873(-) Y 3'UTR//intron       25219674
chr6:7289890-7289891(-) m6A 3'UTR//intron       24981863//22575960
chr6:7289977-7289978(-) m6A 3'UTR//exon//intron       24981863//22575960
chr6:7298161-7298162(-) Tm CDS       -
chr6:7303834-7303835(-) m6A CDS//exon       22575960
chr6:7310161-7310162(-) m6A CDS//exon       24981863//27773535//22575960
chr6:7310220-7310221(-) m6A CDS//exon       24981863//27773535//22575960
chr6:7313347-7313348(-) m6A CDS//exon//intron       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:7313364-7313365(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:7313371-7313372(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:7313376-7313377(-) m6A 5'UTR//exon//intron       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:7334259-7334260(-) m6A exon       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1277-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
SSR1
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1277-3p
Interactor2: SSR1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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