Detail Information

Basic Information:


  VIRBase ID:  

HHID00070796

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1276:           PCMTD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1276 PCMTD1
miRBase
Accession/Entrez ID		 MIMAT0005930 115294
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1276
rs372186220 chr15:85770551    C/T
rs759704230 chr15:85770557    A/G
rs949716743 chr15:85770550    T/C
rs1469123493 chr15:85770565    T/C
rs34381260 chr15:85770563    CT/C
rs34381260 chr15:85770563    CT/CTT
rs750237476 chr15:85770564    T/C
rs764239400 chr15:85770562    T/C
rs769744052 chr15:85770560    G/A
rs775843960 chr15:85770561    C/A
rs775843960 chr15:85770561    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PCMTD1
chr8:52768051(-) A-I      intronic
chr8:52767280(-) A-I      intronic
chr8:52767245(-) A-I      intronic
chr8:52767195(-) A-I      intronic
chr8:52768409(-) A-I      intronic
chr8:52750412(-) A-I      intronic
chr8:52749377(-) A-I      intronic
chr8:52735841(-) A-I      intronic
chr8:52734463(-) A-I      intronic
chr8:52734460(-) A-I      intronic
chr8:52733828(-) A-I      intronic
chr8:52733802(-) A-I      intronic
chr8:52768434(-) A-I      intronic
chr8:52774410(-) A-I      intronic
chr8:52774411(-) A-I      intronic
chr8:52735912(-) A-I      intronic
chr8:52735948(-) A-I      intronic
chr8:52750571(-) A-I      intronic
chr8:52750597(-) A-I      intronic
chr8:52750628(-) A-I      intronic
chr8:52768424(-) A-I      intronic
chr8:52754964(-) A-I      intronic
chr8:52755003(-) A-I      intronic
chr8:52755006(-) A-I      intronic
chr8:52755013(-) A-I      intronic
chr8:52768341(-) A-I      intronic
chr8:52768443(-) A-I      intronic
chr8:52768484(-) A-I      intronic
chr8:52768492(-) A-I      intronic
chr8:52776290(-) A-I      intronic
chr8:52776365(-) A-I      intronic
chr8:52776401(-) A-I      intronic
chr8:52776483(-) A-I      intronic
chr8:52804007(-) A-I      intronic
chr8:52804019(-) A-I      intronic
chr8:52808685(-) A-I      intronic
chr8:52769954(-) A-I      intronic
chr8:52793054(-) A-I      intronic
chr8:52767329(-) A-I      intronic
chr8:52793065(-) A-I      intronic
chr8:52793067(-) A-I      intronic
chr8:52734362(-) A-I      intronic
chr8:52736011(-) A-I      intronic
chr8:52767569(-) A-I      intronic
chr8:52767647(-) A-I      intronic
chr8:52788323(-) A-I      intronic
chr8:52788410(-) A-I      intronic
chr8:52803997(-) A-I      intronic
chr8:52791610(-) A-I      intronic
chr8:52776411(-) A-I      intronic
chr8:52768006(-) A-I      intronic
chr8:52767350(-) A-I      intronic
chr8:52767513(-) A-I      intronic
chr8:52767572(-) A-I      intronic
chr8:52767651(-) A-I      intronic
chr8:52767844(-) A-I      intronic
chr8:52767981(-) A-I      intronic
chr8:52750966(-) A-I      intronic
chr8:52768425(-) A-I      intronic
chr8:52767354(-) A-I      intronic
chr8:52750593(-) A-I      intronic
chr8:52750801(-) A-I      intronic
chr8:52733821(-) A-I      intronic
chr8:52755160(-) A-I      intronic
chr8:52786642(-) A-I      intronic
chr8:52735975(-) A-I      intronic
chr8:52774349(-) A-I      intronic
chr8:52735902(-) A-I      intronic
chr8:52750859(-) A-I      intronic
chr8:52767652(-) A-I      intronic
chr8:52750437(-) A-I      intronic
chr8:52804075(-) A-I      intronic
chr8:52788324(-) A-I      intronic
chr8:52750620(-) A-I      intronic
chr8:52733815(-) A-I      intronic
chr8:52733974(-) A-I      intronic
chr8:52736006(-) A-I      intronic
chr8:52786569(-) A-I      intronic
chr8:52767172(-) A-I      intronic
chr8:52788241(-) A-I      intronic
chr8:52768031(-) A-I      intronic
chr8:52803857(-) A-I      intronic
chr8:52767194(-) A-I      intronic
chr8:52767969(-) A-I      intronic
chr8:52767622(-) A-I      intronic
chr8:52768348(-) A-I      intronic
chr8:52764383(-) A-I      intronic
chr8:52750436(-) A-I      intronic
chr8:52768315(-) A-I      intronic
chr8:52808670(-) A-I      intronic
chr8:52735852(-) A-I      intronic
chr8:52750373(-) A-I      intronic
chr8:52764305(-) A-I      intronic
chr8:52768388(-) A-I      intronic
chr8:52754958(-) A-I      intronic
chr8:52767196(-) A-I      intronic
chr8:52735968(-) A-I      intronic
chr8:52733754(-) A-I      intronic
chr8:52767209(-) A-I      intronic
chr8:52768387(-) A-I      intronic
chr8:52768446(-) A-I      intronic
chr8:52808733(-) A-I      intronic
chr8:52750802(-) A-I      intronic
chr8:52768368(-) A-I      intronic
chr8:52767610(-) A-I      intronic
chr8:52767831(-) A-I      intronic
chr8:52733951(-) A-I      intronic
chr8:52786679(-) A-I      intronic
chr8:52764375(-) A-I      intronic
chr8:52735940(-) A-I      intronic
chr8:52733989(-) A-I      intronic
chr8:52734567(-) A-I      intronic
chr8:52788409(-) A-I      intronic
chr8:52764242(-) A-I      intronic
chr8:52768287(-) A-I      intronic
chr8:52768495(-) A-I      intronic
chr8:52768384(-) A-I      intronic
chr8:52734546(-) A-I      intronic
chr8:52774477(-) A-I      intronic
chr8:52768252(-) A-I      intronic
chr8:52768036(-) A-I      intronic
chr8:52734464(-) A-I      intronic
chr8:52733946(-) A-I      intronic
chr8:52750408(-) A-I      intronic
chr8:52768457(-) A-I      intronic
chr8:52750589(-) A-I      intronic
chr8:52734369(-) A-I      intronic
chr8:52733773(-) A-I      intronic
chr8:52755019(-) A-I      intronic
chr8:52733968(-) A-I      intronic
chr8:52767905(-) A-I      intronic
chr8:52768479(-) A-I      intronic
chr8:52767970(-) A-I      intronic
chr8:52750937(-) A-I      intronic
chr8:52803892(-) A-I      intronic
chr8:52733973(-) A-I      intronic
chr8:52764312(-) A-I      intronic
chr8:52808643(-) A-I      intronic
chr8:52750374(-) A-I      intronic
chr8:52764321(-) A-I      intronic
chr8:52770469(-) A-I      intronic
chr8:52764505(-) A-I      intronic
chr8:52768260(-) A-I      intronic
chr8:52735981(-) A-I      intronic
chr8:52734364(-) A-I      intronic
chr8:52774437(-) A-I      intronic
chr8:52760427(-) A-I      intronic
chr8:52767920(-) A-I      intronic
chr8:52768465(-) A-I      intronic
chr8:52734590(-) A-I      intronic
chr8:52764483(-) A-I      intronic
chr8:52767552(-) A-I      intronic
chr8:52750992(-) A-I      intronic
chr8:52768501(-) A-I      intronic
chr8:52767244(-) A-I      intronic
chr8:52735858(-) A-I      intronic
chr8:52767180(-) A-I      intronic
chr8:52733765(-) A-I      intronic
chr8:52767977(-) A-I      intronic
chr8:52767612(-) A-I      intronic
chr8:52735789(-) A-I      intronic
chr8:52733875(-) A-I      intronic
chr8:52735987(-) A-I      intronic
chr8:52734476(-) A-I      intronic
chr8:52750407(-) A-I      intronic
chr8:52768324(-) A-I      intronic
chr8:52768358(-) A-I      intronic
chr8:52734500(-) A-I      intronic
chr8:52734392(-) A-I      intronic
chr8:52767293(-) A-I      intronic
chr8:52734303(-) A-I      intronic
chr8:52734428(-) A-I      intronic
chr8:52735924(-) A-I      intronic
chr8:52736023(-) A-I      intronic
chr8:52767721(-) A-I      intronic
chr8:52767478(-) A-I      intronic
chr8:52800440(-) A-I      intronic
chr8:52767274(-) A-I      intronic
chr8:52750997(-) A-I      intronic
chr8:52733967(-) A-I      intronic
chr8:52767173(-) A-I      intronic
chr8:52735806(-) A-I      intronic
chr8:52767182(-) A-I      intronic
chr8:52734490(-) A-I      intronic
chr8:52735942(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PCMTD1
chr8:52733773(-) A-I intron -    21960545   //22327324
chr8:52735987(-) A-I intron -    22327324
chr8:52736019(-) A-I intron -    21960545   //22327324
chr8:52768358(-) A-I intron -    22327324
chr8:52768501(-) A-I intron -    22327324
chr8:52733765(-) A-I intron -    21960545
chr8:52733815(-) A-I intron -    21960545
chr8:52733898(-) A-I intron -    21960545
chr8:52733907(-) A-I intron -    21960545
chr8:52733980(-) A-I intron -    21960545
chr8:52734590(-) A-I intron -    21960545
chr8:52735852(-) A-I intron -    21960545
chr8:52735858(-) A-I intron -    21960545
chr8:52735902(-) A-I intron -    21960545
chr8:52735940(-) A-I intron -    21960545
chr8:52793009(-) A-I intron -    21960545
chr8:52793057(-) A-I intron -    21960545
chr8:52795905(-) A-I intron -    21960545
chr8:52733754(-) A-G intron -    22484847
chr8:52733765(-) A-G intron -    22484847
chr8:52733773(-) A-G intron -    22484847
chr8:52733815(-) A-G intron -    22484847
chr8:52733898(-) A-G intron -    22484847
chr8:52733907(-) A-G intron -    22484847
chr8:52733951(-) A-G intron -    22484847
chr8:52733967(-) A-G intron -    22484847
chr8:52733968(-) A-G intron -    22484847
chr8:52733980(-) A-G intron -    22484847
chr8:52734369(-) A-G intron -    22484847
chr8:52734546(-) A-G intron -    22484847
chr8:52735806(-) A-G intron -    22484847
chr8:52735852(-) A-G intron -    22484847
chr8:52735858(-) A-G intron -    22484847
chr8:52735902(-) A-G intron -    22484847
chr8:52735940(-) A-G intron -    22484847
chr8:52735942(-) A-G intron -    22484847
chr8:52735987(-) A-G intron -    22484847
chr8:52750373(-) A-G intron -    22484847
chr8:52750374(-) A-G intron -    22484847
chr8:52750407(-) A-G intron -    22484847
chr8:52750408(-) A-G intron -    22484847
chr8:52750436(-) A-G intron -    22484847
chr8:52750437(-) A-G intron -    22484847
chr8:52750620(-) A-G intron -    22484847
chr8:52750801(-) A-G intron -    22484847
chr8:52750829(-) A-G intron -    22484847
chr8:52750966(-) A-G intron -    22484847
chr8:52767173(-) A-G intron -    22484847
chr8:52767196(-) A-G intron -    22484847
chr8:52767244(-) A-G intron -    22484847
chr8:52767257(-) A-G intron -    22484847
chr8:52767271(-) A-G intron -    22484847
chr8:52767309(-) A-G intron -    22484847
chr8:52767325(-) A-G intron -    22484847
chr8:52767354(-) A-G intron -    22484847
chr8:52767361(-) A-G intron -    22484847
chr8:52767490(-) A-G intron -    22484847
chr8:52767563(-) A-G intron -    22484847
chr8:52767610(-) A-G intron -    22484847
chr8:52767622(-) A-G intron -    22484847
chr8:52767652(-) A-G intron -    22484847
chr8:52767721(-) A-G intron -    22484847
chr8:52767843(-) A-G intron -    22484847
chr8:52767969(-) A-G intron -    22484847
chr8:52767970(-) A-G intron -    22484847
chr8:52767971(-) A-G intron -    22484847
chr8:52767977(-) A-G intron -    22484847
chr8:52768011(-) A-G intron -    22484847
chr8:52768017(-) A-G intron -    22484847
chr8:52768031(-) A-G intron -    22484847
chr8:52768079(-) A-G intron -    22484847
chr8:52768324(-) A-G intron -    22484847
chr8:52768348(-) A-G intron -    22484847
chr8:52768358(-) A-G intron -    22484847
chr8:52768376(-) A-G intron -    22484847
chr8:52768384(-) A-G intron -    22484847
chr8:52768418(-) A-G intron -    22484847
chr8:52768423(-) A-G intron -    22484847
chr8:52768425(-) A-G intron -    22484847
chr8:52768431(-) A-G intron -    22484847
chr8:52768433(-) A-G intron -    22484847
chr8:52768457(-) A-G intron -    22484847
chr8:52768462(-) A-G intron -    22484847
chr8:52768478(-) A-G intron -    22484847
chr8:52768479(-) A-G intron -    22484847
chr8:52768501(-) A-G intron -    22484847
chr8:52804075(-) A-G intron -    22484847
chr8:52793076(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PCMTD1
chr8:52730159-52730160(-) m6A 3'UTR       27773535
chr8:52730182-52730183(-) m6A 3'UTR       27773535
chr8:52730366-52730367(-) m6A 3'UTR       27773535
chr8:52730426-52730427(-) m6A 3'UTR       27773535
chr8:52730444-52730445(-) m6A 3'UTR       27773535
chr8:52730466-52730467(-) m6A 3'UTR       27773535
chr8:52730477-52730478(-) m6A 3'UTR       27773535
chr8:52730523-52730524(-) m6A 3'UTR       27773535
chr8:52732917-52732918(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr8:52733082-52733083(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr8:52733138-52733139(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr8:52733250-52733251(-) m6A CDS//exon       24981863//27773535//22608085
chr8:52739505-52739506(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr8:52758258-52758259(-) m6A CDS//exon//intron       27773535
chr8:52762350-52762351(-) m6A 3'UTR//intron       27773535
chr8:52762365-52762366(-) m6A 3'UTR//intron       24284625//27773535
chr8:52762395-52762396(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr8:52762401-52762402(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr8:52762417-52762418(-) m6A 3'UTR//intron       24284625//24981863//27773535
chr8:52762482-52762483(-) m6A 3'UTR//intron       24284625//24981863//22608085
chr8:52762505-52762506(-) m6A 3'UTR//intron       24284625//24981863//22608085
chr8:52773440-52773441(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr8:52773480-52773481(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr8:52773532-52773533(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:52773553-52773554(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:52773568-52773569(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr8:52782834-52782835(-) m6A 5'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1276
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
PCMTD1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1276
Interactor2: PCMTD1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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