Basic Information:

  VIRBase ID:  

HHID00070771

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1276:  MIMAT0005930          RGL1:  NM_001297672     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1276	RGL1
miRBase Accession/Entrez ID	MIMAT0005930	23179
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	RGL

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-1276	rs372186220 chr15:85770551    C/T rs759704230 chr15:85770557    A/G rs949716743 chr15:85770550    T/C rs1469123493 chr15:85770565    T/C rs34381260 chr15:85770563    CT/C rs34381260 chr15:85770563    CT/CTT rs750237476 chr15:85770564    T/C rs764239400 chr15:85770562    T/C rs769744052 chr15:85770560    G/A rs775843960 chr15:85770561    C/A rs775843960 chr15:85770561    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RGL1	chr1:183676471(+) A-I      intronic chr1:183824977(+) A-I      intronic chr1:183676528(+) A-I      intronic chr1:183824981(+) A-I      intronic chr1:183824973(+) A-I      intronic chr1:183824984(+) A-I      intronic chr1:183676474(+) A-I      intronic chr1:183676480(+) A-I      intronic chr1:183879378(+) A-I      intronic chr1:183748665(+) A-I      intronic chr1:183748645(+) A-I      intronic chr1:183743970(+) A-I      intronic chr1:183743969(+) A-I      intronic chr1:183743947(+) A-I      intronic chr1:183737707(+) A-I      intronic chr1:183737023(+) A-I      intronic chr1:183637685(+) A-I      intronic chr1:183619660(+) A-I      intronic chr1:183619535(+) A-I      intronic chr1:183608437(+) A-I      intronic chr1:183619528(+) A-I      intronic chr1:183832512(+) A-I      intronic chr1:183609106(+) A-I      intronic chr1:183609151(+) A-I      intronic chr1:183610538(+) A-I      intronic chr1:183618968(+) A-I      intronic chr1:183821882(+) A-I      intronic chr1:183821836(+) A-I      intronic chr1:183821789(+) A-I      intronic chr1:183821772(+) A-I      intronic chr1:183818245(+) A-I      intronic chr1:183798478(+) A-I      intronic chr1:183798473(+) A-I      intronic chr1:183798307(+) A-I      intronic chr1:183618972(+) A-I      intronic chr1:183619086(+) A-I      intronic chr1:183619131(+) A-I      intronic chr1:183619415(+) A-I      intronic chr1:183619445(+) A-I      intronic chr1:183792968(+) A-I      intronic chr1:183619525(+) A-I      intronic chr1:183792947(+) A-I      intronic chr1:183765379(+) A-I      intronic chr1:183758486(+) A-I      intronic chr1:183879432(+) A-I      intronic chr1:183879388(+) A-I      intronic chr1:183879311(+) A-I      intronic chr1:183870345(+) A-I      intronic chr1:183870262(+) A-I      intronic chr1:183870257(+) A-I      intronic chr1:183870149(+) A-I      intronic chr1:183870121(+) A-I      intronic chr1:183608165(+) A-I      intronic chr1:183870112(+) A-I      intronic chr1:183870070(+) A-I      intronic chr1:183608177(+) A-I      intronic chr1:183608181(+) A-I      intronic chr1:183870058(+) A-I      intronic chr1:183608229(+) A-I      intronic chr1:183608361(+) A-I      intronic chr1:183869900(+) A-I      intronic chr1:183869829(+) A-I      intronic chr1:183869826(+) A-I      intronic chr1:183865419(+) A-I      intronic chr1:183865382(+) A-I      intronic chr1:183844933(+) A-I      intronic chr1:183844909(+) A-I      intronic chr1:183844893(+) A-I      intronic chr1:183844781(+) A-I      intronic chr1:183876984(+) A-I      intronic chr1:183609149(+) A-I      intronic chr1:183865395(+) A-I      intronic chr1:183619128(+) A-I      intronic chr1:183847532(+) A-I      intronic chr1:183870312(+) A-I      intronic chr1:183865449(+) A-I      intronic chr1:183736304(+) A-I      intronic chr1:183609102(+) A-I      intronic chr1:183619081(+) A-I      intronic chr1:183736989(+) A-I      intronic chr1:183869862(+) A-I      intronic chr1:183870115(+) A-I      intronic chr1:183865453(+) A-I      intronic chr1:183736352(+) A-I      intronic chr1:183608159(+) A-I      intronic chr1:183789020(+) A-I      intronic chr1:183788972(+) A-I      intronic chr1:183736096(+) A-I      intronic chr1:183608224(+) A-I      intronic chr1:183619516(+) A-I      intronic chr1:183758438(+) A-I      intronic chr1:183619076(+) A-I      intronic chr1:183798550(+) A-I      intronic chr1:183869887(+) A-I      intronic chr1:183869778(+) A-I      intronic chr1:183737721(+) A-I      intronic chr1:183662271(+) A-I      intronic chr1:183876942(+) A-I      intronic chr1:183870498(+) A-I      intronic chr1:183869695(+) A-I      intronic chr1:183619421(+) A-I      intronic chr1:183824936(+) A-I      intronic chr1:183736961(+) A-I      intronic chr1:183869854(+) A-I      intronic chr1:183608318(+) A-I      intronic chr1:183870268(+) A-I      intronic chr1:183869845(+) A-I      intronic chr1:183870271(+) A-I      intronic chr1:183870180(+) A-I      intronic chr1:183736826(+) A-I      intronic chr1:183870555(+) A-I      intronic chr1:183869739(+) A-I      intronic chr1:183736170(+) A-I      intronic chr1:183870606(+) A-I      intronic chr1:183869683(+) A-I      intronic chr1:183737807(+) A-I      intronic chr1:183869756(+) A-I      intronic chr1:183870057(+) A-I      intronic chr1:183619557(+) A-I      intronic chr1:183865368(+) A-I      intronic chr1:183825075(+) A-I      intronic chr1:183869842(+) A-I      intronic chr1:183824942(+) A-I      intronic chr1:183737653(+) A-I      intronic chr1:183608366(+) A-I      intronic chr1:183609033(+) A-I      intronic chr1:183869742(+) A-I      intronic chr1:183619599(+) A-I      intronic chr1:183619046(+) A-I      intronic chr1:183609041(+) A-I      intronic chr1:183619531(+) A-I      intronic chr1:183764192(+) A-I      intronic chr1:183870123(+) A-I      intronic chr1:183737683(+) A-I      intronic chr1:183798429(+) A-I      intronic chr1:183789149(+) A-I      intronic chr1:183778838(+) A-I      intronic chr1:183784397(+) A-I      intronic chr1:183870385(+) A-I      intronic chr1:183866692(+) A-I      intronic chr1:183844755(+) A-I      intronic chr1:183795042(+) A-I      intronic chr1:183870098(+) A-I      intronic chr1:183824943(+) A-I      intronic chr1:183825617(+) A-I      intronic chr1:183870619(+) A-I      intronic chr1:183662296(+) A-I      intronic chr1:183870249(+) A-I      intronic chr1:183619047(+) A-I      intronic chr1:183894315(+) A-I      intronic chr1:183866413(+) A-I      intronic chr1:183609160(+) A-I      intronic chr1:183876917(+) A-I      intronic chr1:183809764(+) A-I      intronic chr1:183789131(+) A-I      intronic chr1:183870113(+) A-I      intronic chr1:183608160(+) A-I      intronic chr1:183870179(+) A-I      intronic chr1:183737804(+) A-I      intronic chr1:183609116(+) A-I      intronic chr1:183619424(+) A-I      intronic chr1:183619072(+) A-I      intronic chr1:183766369(+) A-I      intronic chr1:183796110(+) A-I      intronic chr1:183870272(+) A-I      intronic chr1:183758964(+) A-I      intronic chr1:183869700(+) A-I      intronic chr1:183609094(+) A-I      intronic chr1:183608381(+) A-I      intronic chr1:183609026(+) A-I      intronic chr1:183619515(+) A-I      intronic chr1:183866595(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RGL1	chr1:183608224(+) A-G intron -    22484847 chr1:183609026(+) A-G intron -    22484847 chr1:183609033(+) A-G intron -    22484847 chr1:183609041(+) A-G intron -    22484847 chr1:183609094(+) A-G intron -    22484847 chr1:183609116(+) A-G intron -    22484847 chr1:183609149(+) A-G intron -    22484847 chr1:183609160(+) A-G intron -    22484847 chr1:183706718(+) A-T intron -    22484847 chr1:183736961(+) A-G intron -    22484847 chr1:183736989(+) A-G intron -    22484847 chr1:183778838(+) A-G intron -    22484847 chr1:183788972(+) A-G intron -    22484847 chr1:183789131(+) A-G intron -    22484847 chr1:183789149(+) A-G intron -    22484847 chr1:183795042(+) A-G intron -    22484847 chr1:183796110(+) A-G intron -    22484847 chr1:183805431(+) T-C intron -    22484847 chr1:183838153(+) G-A intron -    22484847 chr1:183844755(+) A-G intron -    22484847 chr1:183865368(+) A-G intron -    22484847 chr1:183866682(+) C-A intron -    22484847 chr1:183869683(+) A-G intron -    22484847 chr1:183869695(+) A-G intron -    22484847 chr1:183869700(+) A-G intron -    22484847 chr1:183869739(+) A-G intron -    22484847 chr1:183869742(+) A-G intron -    22484847 chr1:183869756(+) A-G intron -    22484847 chr1:183869778(+) A-G intron -    22484847 chr1:183869842(+) A-G intron -    22484847 chr1:183869845(+) A-G intron -    22484847 chr1:183869862(+) A-G intron -    22484847 chr1:183870057(+) A-G intron -    22484847 chr1:183870098(+) A-G intron -    22484847 chr1:183870113(+) A-G intron -    22484847 chr1:183870115(+) A-G intron -    22484847 chr1:183870123(+) A-G intron -    22484847 chr1:183870179(+) A-G intron -    22484847 chr1:183870180(+) A-G intron -    22484847 chr1:183870249(+) A-G intron -    22484847 chr1:183870268(+) A-G intron -    22484847 chr1:183870271(+) A-G intron -    22484847 chr1:183870272(+) A-G intron -    22484847 chr1:183870385(+) A-G intron -    22484847 chr1:183870498(+) A-G intron -    22484847 chr1:183870606(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RGL1	chr1:183605343-183605344(+) m6A 5'UTR       24284625//24209618//22608085 chr1:183605364-183605365(+) m6A 5'UTR       24284625//24209618//22608085 chr1:183605376-183605377(+) m6A 5'UTR       24284625//24209618//22608085 chr1:183605456-183605457(+) m6A 5'UTR       24284625//22608085 chr1:183605468-183605469(+) m6A 5'UTR       - chr1:183774424-183774425(+) m6A 5'UTR//intron       24981863 chr1:183775521-183775522(+) m6A CDS       24981863 chr1:183849796-183849797(+) m6A CDS       24981863 chr1:183849874-183849875(+) Cm CDS       - chr1:183876226-183876227(+) m6A CDS       - chr1:183881307-183881308(+) m6A CDS       - chr1:183885623-183885624(+) m6A CDS       24981863 chr1:183885773-183885774(+) m6A CDS       24981863 chr1:183885803-183885804(+) m6A CDS       24981863 chr1:183891373-183891374(+) m6A CDS       24981863 chr1:183891416-183891417(+) m6A CDS       24284625//24981863//22608085 chr1:183891422-183891423(+) m6A CDS       24284625//24981863//22608085 chr1:183891464-183891465(+) m6A CDS       24284625//24981863//22608085 chr1:183895253-183895254(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895280-183895281(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895292-183895293(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895319-183895320(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895332-183895333(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895341-183895342(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895354-183895355(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895375-183895376(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895404-183895405(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:183895434-183895435(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:183895477-183895478(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:183895591-183895592(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:183895654-183895655(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:183895683-183895684(+) m6A 3'UTR       24284625//24981863//22608085 chr1:183895743-183895744(+) m6A 3'UTR       24284625//24981863//22608085 chr1:183895762-183895763(+) m6A 3'UTR       24284625//24981863//22608085 chr1:183895773-183895774(+) m6A 3'UTR       24284625//24981863//22608085 chr1:183895831-183895832(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:183895838-183895839(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:183895921-183895922(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:183895978-183895979(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:183895996-183895997(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr1:183896117-183896118(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:183896174-183896175(+) m6A 3'UTR       24981863//22608085 chr1:183896229-183896230(+) m6A 3'UTR       24981863//22608085 chr1:183896314-183896315(+) m6A 3'UTR       24981863//22608085 chr1:183896377-183896378(+) m6A 3'UTR       - chr1:183896509-183896510(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-1276	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	RGL1	Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1276
Interactor2: RGL1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.