Basic Information:

  VIRBase ID:  

HHID00070765

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1276:  MIMAT0005930          ZBTB18:  NM_001278196     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1276	ZBTB18
miRBase Accession/Entrez ID	MIMAT0005930	10472
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C2H2-171//MRD22//RP58//TAZ-1//ZNF238

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-1276	rs372186220 chr15:85770551    C/T rs759704230 chr15:85770557    A/G rs949716743 chr15:85770550    T/C rs1469123493 chr15:85770565    T/C rs34381260 chr15:85770563    CT/C rs34381260 chr15:85770563    CT/CTT rs750237476 chr15:85770564    T/C rs764239400 chr15:85770562    T/C rs769744052 chr15:85770560    G/A rs775843960 chr15:85770561    C/A rs775843960 chr15:85770561    C/T

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZBTB18	chr1:244214705-244214706(+) m6A 5'UTR//intron       24284625//24981863 chr1:244214719-244214720(+) m6A 5'UTR//intron       24284625//24981863 chr1:244217098-244217099(+) m6A 5'UTR//CDS       24284625//25456834//24981863//22575960//22608085 chr1:244217116-244217117(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:244217126-244217127(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:244217156-244217157(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217266-244217267(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244217275-244217276(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244217284-244217285(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244217299-244217300(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244217360-244217361(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:244217374-244217375(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:244217479-244217480(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr1:244217518-244217519(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:244217605-244217606(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217626-244217627(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217647-244217648(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217671-244217672(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217733-244217734(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:244217824-244217825(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217866-244217867(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244217981-244217982(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:244218061-244218062(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:244218082-244218083(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:244218091-244218092(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:244218354-244218355(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244218393-244218394(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244218541-244218542(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244218551-244218552(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244218583-244218584(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:244218631-244218632(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244218636-244218637(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:244218659-244218660(+) m6A CDS       24284625//25456834//24981863//22608085 chr1:244219179-244219180(+) m6A 3'UTR       22608085 chr1:244219197-244219198(+) m6A 3'UTR       25456834//24981863//22608085 chr1:244219272-244219273(+) m6A 3'UTR       25456834//24981863//22608085 chr1:244219333-244219334(+) m6A 3'UTR       25456834//24981863//22608085 chr1:244220008-244220009(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085 chr1:244220033-244220034(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr1:244220038-244220039(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr1:244220073-244220074(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr1:244220338-244220339(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-1276	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	ZBTB18	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1276
Interactor2: ZBTB18

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.