Basic Information:

  VIRBase ID:  

HHID00070759

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1276:  MIMAT0005930          KALRN:  NR_028136     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1276	KALRN
miRBase Accession/Entrez ID	MIMAT0005930	8997
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARHGEF24//CHD5//CHDS5//DUET//DUO//HAPIP//TRAD

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-1276	rs372186220 chr15:85770551    C/T rs759704230 chr15:85770557    A/G rs949716743 chr15:85770550    T/C rs1469123493 chr15:85770565    T/C rs34381260 chr15:85770563    CT/C rs34381260 chr15:85770563    CT/CTT rs750237476 chr15:85770564    T/C rs764239400 chr15:85770562    T/C rs769744052 chr15:85770560    G/A rs775843960 chr15:85770561    C/A rs775843960 chr15:85770561    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KALRN	chr3:124360964(+) A-I      intronic chr3:123893079(+) A-I      intronic chr3:123893097(+) A-I      intronic chr3:124329760(+) A-I      intronic chr3:124329662(+) A-I      intronic chr3:124329608(+) A-I      intronic chr3:124329602(+) A-I      intronic chr3:124329763(+) A-I      intronic chr3:123893082(+) A-I      intronic chr3:123893103(+) A-I      intronic chr3:123893102(+) A-I      intronic chr3:124408243(+) A-I      intronic chr3:124360927(+) A-I      intronic chr3:124360928(+) A-I      intronic chr3:124360933(+) A-I      intronic chr3:124360943(+) A-I      intronic chr3:124360958(+) A-I      intronic chr3:123893095(+) A-I      intronic chr3:124360970(+) A-I      intronic chr3:124360972(+) A-I      intronic chr3:124360975(+) A-I      intronic chr3:124360981(+) A-I      intronic chr3:124378834(+) A-I      intronic chr3:124406957(+) A-I      intronic chr3:124406958(+) A-I      intronic chr3:124344654(+) A-I      intronic chr3:124344769(+) A-I      intronic chr3:124344781(+) A-I      intronic chr3:124347478(+) A-I      intronic chr3:124347487(+) A-I      intronic chr3:124347492(+) A-I      intronic chr3:124359227(+) A-I      intronic chr3:124359233(+) A-I      intronic chr3:124359279(+) A-I      intronic chr3:124359374(+) A-I      intronic chr3:124360919(+) A-I      intronic chr3:124360930(+) A-I      intronic chr3:124360938(+) A-I      intronic chr3:124361119(+) A-I      intronic chr3:124118143(+) A-I      intronic chr3:124361781(+) A-I      intronic chr3:124300972(+) A-I      intronic chr3:124062134(+) A-I      intronic chr3:124361864(+) A-I      intronic chr3:124368365(+) A-I      intronic chr3:124368499(+) A-I      intronic chr3:124378840(+) A-I      intronic chr3:124378848(+) A-I      intronic chr3:124378963(+) A-I      intronic chr3:124379014(+) A-I      intronic chr3:124379300(+) A-I      intronic chr3:124379322(+) A-I      intronic chr3:124379328(+) A-I      intronic chr3:123984779(+) A-I      intronic chr3:123956507(+) A-I      intronic chr3:123893012(+) A-I      intronic chr3:124407105(+) A-I      intronic chr3:123892580(+) A-I      intronic chr3:124379357(+) A-I      intronic chr3:124379477(+) A-I      intronic chr3:124379485(+) A-I      intronic chr3:124333654(+) A-I      intronic chr3:124333639(+) A-I      intronic chr3:124333542(+) A-I      intronic chr3:124333433(+) A-I      intronic chr3:124330989(+) A-I      intronic chr3:124329648(+) A-I      intronic chr3:124317665(+) A-I      intronic chr3:124425984(+) A-I      intronic chr3:124317663(+) A-I      intronic chr3:124408064(+) A-I      intronic chr3:124426015(+) A-I      intronic chr3:124430121(+) A-I      intronic chr3:124306683(+) A-I      intronic chr3:124344291(+) A-I      intronic chr3:124338562(+) A-I      intronic chr3:124315748(+) A-I      intronic chr3:124384453(+) A-I      intronic chr3:124390852(+) A-I      intronic chr3:124333469(+) A-I      intronic chr3:124406971(+) A-I      intronic chr3:124406996(+) A-I      intronic chr3:124407012(+) A-I      intronic chr3:124407085(+) A-I      intronic chr3:124408174(+) A-I      intronic chr3:124342129(+) A-I      intronic chr3:124342122(+) A-I      intronic chr3:124342120(+) A-I      intronic chr3:124339086(+) A-I      intronic chr3:124338568(+) A-I      intronic chr3:124338563(+) A-I      intronic chr3:124329652(+) A-I      intronic chr3:124335924(+) A-I      intronic chr3:124335535(+) A-I      intronic chr3:124379334(+) A-I      intronic chr3:124282672(+) A-I      intronic chr3:124246309(+) A-I      intronic chr3:124235874(+) A-I      intronic chr3:124235845(+) A-I      intronic chr3:124231261(+) A-I      intronic chr3:124203773(+) A-I      intronic chr3:124190746(+) A-I      intronic chr3:124190664(+) A-I      intronic chr3:124190658(+) A-I      intronic chr3:124301743(+) A-I      intronic chr3:124300971(+) A-I      intronic chr3:124177795(+) A-I      intronic chr3:124290658(+) A-I      intronic chr3:124290615(+) A-I      intronic chr3:124290569(+) A-I      intronic chr3:124283341(+) A-I      intronic chr3:124283090(+) A-I      intronic chr3:124307372(+) A-I      intronic chr3:124308307(+) A-I      intronic chr3:124308313(+) A-I      intronic chr3:124310275(+) A-I      intronic chr3:124315640(+) A-I      intronic chr3:124177791(+) A-I      intronic chr3:124176884(+) A-I      intronic chr3:124176169(+) A-I      intronic chr3:124176056(+) A-I      intronic chr3:124160680(+) A-I      intronic chr3:124130313(+) A-I      intronic chr3:124285203(+) A-I      intronic chr3:124391968(+) A-I      intronic chr3:123904123(+) A-I      intronic chr3:124392208(+) A-I      intronic chr3:124409637(+) A-I      intronic chr3:124190314(+) A-I      intronic chr3:124405762(+) A-I      intronic chr3:124320752(+) A-I      intronic chr3:124263329(+) A-I      intronic chr3:124408315(+) A-I      intronic chr3:124344873(+) A-I      intronic chr3:124317668(+) A-I      intronic chr3:124379018(+) A-I      intronic chr3:124329667(+) A-I      intronic chr3:124320762(+) A-I      intronic chr3:124378904(+) A-I      intronic chr3:124190351(+) A-I      intronic chr3:124344849(+) A-I      intronic chr3:124392162(+) A-I      intronic chr3:124379015(+) A-I      intronic chr3:124361844(+) A-I      intronic chr3:124292372(+) A-I      intronic chr3:123899987(+) A-I      intronic chr3:124317636(+) A-I      intronic chr3:124120327(+) A-I      intronic chr3:124285070(+) A-I      intronic chr3:124302774(+) A-I      intronic chr3:124190180(+) A-I      intronic chr3:123892722(+) A-I      intronic chr3:124224406(+) A-I      intronic chr3:124392030(+) A-I      intronic chr3:124320793(+) A-I      intronic chr3:124190660(+) A-I      intronic chr3:124190648(+) A-I      intronic chr3:124406911(+) A-I      intronic chr3:124342052(+) A-I      intronic chr3:124379273(+) A-I      intronic chr3:124308293(+) A-I      intronic chr3:124359234(+) A-I      intronic chr3:124308261(+) A-I      intronic chr3:124392099(+) A-I      intronic chr3:124379381(+) A-I      intronic chr3:124361803(+) A-I      intronic chr3:124410090(+) A-I      intronic chr3:124368568(+) A-I      intronic chr3:124282664(+) A-I      intronic chr3:124392095(+) A-I      intronic chr3:124301710(+) A-I      intronic chr3:124436422(+) A-I      intronic chr3:123928231(+) A-I      intronic chr3:124359332(+) A-I      intronic chr3:123897770(+) A-I      intronic chr3:124190703(+) A-I      intronic chr3:124379421(+) A-I      intronic chr3:124406997(+) A-I      intronic chr3:124361076(+) A-I      intronic chr3:124310987(+) A-I      intronic chr3:124368491(+) A-I      intronic chr3:124307389(+) A-I      intronic chr3:124125890(+) A-I      intronic chr3:124292493(+) A-I      intronic chr3:123903992(+) A-I      intronic chr3:123908449(+) A-I      intronic chr3:124025034(+) A-I      intronic chr3:124379363(+) A-I      intronic chr3:123906008(+) A-I      intronic chr3:124405792(+) A-I      intronic chr3:124190656(+) A-I      intronic chr3:123921223(+) A-I      intronic chr3:124283466(+) A-I      intronic chr3:124190647(+) A-I      intronic chr3:124405923(+) A-I      intronic chr3:124312742(+) A-I      intronic chr3:124405884(+) A-I      intronic chr3:124405774(+) A-I      intronic chr3:124177661(+) A-I      intronic chr3:124317775(+) A-I      intronic chr3:124326955(+) A-I      intronic chr3:124271765(+) A-I      intronic chr3:124371566(+) A-I      intronic chr3:124368721(+) A-I      intronic chr3:124302773(+) A-I      intronic chr3:124379449(+) A-I      intronic chr3:124368560(+) A-I      intronic chr3:124409640(+) A-I      intronic chr3:124163558(+) A-I      intronic chr3:123900042(+) A-I      intronic chr3:124390876(+) A-I      intronic chr3:124283471(+) A-I      intronic chr3:124282668(+) A-I      intronic chr3:124306804(+) A-I      intronic chr3:124266374(+) A-I      intronic chr3:124379274(+) A-I      intronic chr3:124415490(+) A-I      intronic chr3:124152182(+) A-I      intronic chr3:124344763(+) A-I      intronic chr3:124190272(+) A-I      intronic chr3:124361793(+) A-I      intronic chr3:124360904(+) A-I      intronic chr3:124306802(+) A-I      intronic chr3:124059547(+) A-I      intronic chr3:124152405(+) A-I      intronic chr3:124120127(+) A-I      intronic chr3:124300146(+) A-I      intronic chr3:124359220(+) A-I      intronic chr3:123904159(+) A-I      intronic chr3:123908529(+) A-I      intronic chr3:124302745(+) A-I      intronic chr3:124344808(+) A-I      intronic chr3:124362527(+) A-I      intronic chr3:124120150(+) A-I      intronic chr3:124224359(+) A-I      intronic chr3:124025083(+) A-I      intronic chr3:124190274(+) A-I      intronic chr3:124190667(+) A-I      intronic chr3:124024958(+) A-I      intronic chr3:124359263(+) A-I      intronic chr3:124424992(+) A-I      intronic chr3:123908532(+) A-I      intronic chr3:124190344(+) A-I      intronic chr3:124228117(+) A-I      intronic chr3:124307482(+) A-I      intronic chr3:124310246(+) A-I      intronic chr3:124292442(+) A-I      intronic chr3:123892527(+) A-I      intronic chr3:124190315(+) A-I      intronic chr3:124190693(+) A-I      intronic chr3:123906045(+) A-I      intronic chr3:124120094(+) A-I      intronic chr3:124317617(+) A-I      intronic chr3:123904002(+) A-I      intronic chr3:124307495(+) A-I      intronic chr3:124176152(+) A-I      intronic chr3:124190578(+) A-I      intronic chr3:123908735(+) A-I      intronic chr3:124379467(+) A-I      intronic chr3:124307411(+) A-I      intronic chr3:124315844(+) A-I      intronic chr3:124391015(+) A-I      intronic chr3:124379417(+) A-I      intronic chr3:124407052(+) A-I      intronic chr3:124365936(+) A-I      intronic chr3:124271787(+) A-I      intronic chr3:124320619(+) A-I      intronic chr3:124308241(+) A-I      intronic chr3:124265255(+) A-I      intronic chr3:124361115(+) A-I      intronic chr3:124329679(+) A-I      intronic chr3:124312761(+) A-I      intronic chr3:124283114(+) A-I      intronic chr3:124291024(+) A-I      intronic chr3:124407038(+) A-I      intronic chr3:124368440(+) A-I      intronic chr3:124120253(+) A-I      intronic chr3:124362570(+) A-I      intronic chr3:124329676(+) A-I      intronic chr3:124361764(+) A-I      intronic chr3:123892660(+) A-I      intronic chr3:124176868(+) A-I      intronic chr3:124292380(+) A-I      intronic chr3:124190661(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KALRN	chr3:124235879(+) A-G intron -    22484847 chr3:124307389(+) A-G intron -    22484847 chr3:124307482(+) A-G intron -    22484847 chr3:124308261(+) A-G intron -    22484847 chr3:124310195(+) A-G intron -    22484847 chr3:124310220(+) A-G intron -    22484847 chr3:124312742(+) A-G intron -    22484847 chr3:124333602(+) A-G intron -    22484847 chr3:124335544(+) A-G intron -    22484847 chr3:124339167(+) T-C intron -    22484847 chr3:124342052(+) A-G intron -    22484847 chr3:124359234(+) A-G intron -    22484847 chr3:124359263(+) A-G intron -    22484847 chr3:124359332(+) A-G intron -    22484847 chr3:124379015(+) A-G intron -    22484847 chr3:124390876(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KALRN	chr3:123882428-123882429(+) m6A 3'UTR//exon//intron       24981863 chr3:123882444-123882445(+) m6A 3'UTR//exon//intron       24981863 chr3:123882535-123882536(+) m6A 3'UTR//exon//intron       24981863 chr3:123882564-123882565(+) m6A 3'UTR//exon//intron       24981863 chr3:124351520-124351521(+) m6A CDS//exon       - chr3:124351536-124351537(+) m6A CDS//exon       - chr3:124374472-124374473(+) m6A CDS//exon       24981863 chr3:124374482-124374483(+) m6A CDS//exon       24981863 chr3:124376349-124376350(+) m6A CDS//exon       24981863 chr3:124393518-124393519(+) m6A exon//intron       24981863 chr3:124393530-124393531(+) m6A exon//intron       24981863 chr3:124393544-124393545(+) m6A exon//intron       24981863 chr3:124437936-124437937(+) m6A CDS       - chr3:124438303-124438304(+) m6A CDS       24981863 chr3:124438360-124438361(+) m6A 3'UTR       24981863 chr3:124438371-124438372(+) m6A 3'UTR       24981863 chr3:124438448-124438449(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-1276	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	KALRN	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1276
Interactor2: KALRN

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.