Detail

Basic Information:

VIRBase ID:

HHID00070656

Virus:

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

Host:

Homo sapiens

Confidence Score:

0.4752

Interaction Type:

Host-Host interaction

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1270	TNRC18P2
miRBase Accession/Entrez ID	MIMAT0005924	27320
Organism	Homo sapiens	Homo sapiens
Category	miRNA	pseudo
Alias	-	TNRC18//TNRC18B

ncRNA SNP information:

Resource

Symbol

SNP ID

SNP Position

Ref/Alt

miRNASNP-v3

hsa-miR-1270

rs1226434322	chr19:20399331	C/T
rs1272127863	chr19:20399325	G/C
rs1340664883	chr19:20399339	C/G

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

hsa-miR-1270

Exosome	Breast milk\|Cell lines\|Epididymal epithelial cells\|Osteoblast\|Plasma\|Primary glioblastoma neurosphere cells\|Primary keratinocyte\|Saliva\|Serum\|Urine	-
Microvesicle	Follicular fluid	23666971
Microvesicle	Fibroblasts\|Mesenchymal stem cells	-
Mitochondrion	Cell line (HEK-293)	22984580

TNRC18P2

Exosome

Blood

-

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1270

Interactor2: TNRC18P2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.