Detail Information

Basic Information:


  VIRBase ID:  

HHID00070564

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548o-3p:           CAMSAP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548o-3p CAMSAP1
miRBase
Accession/Entrez ID		 MIMAT0005919 157922
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548o-3p
rs1339101861 chr20:38516618    G/T
rs1456728168 chr20:38516617    A/G
rs1273591644 chr7:102405749    C/T
rs1307755111 chr7:102405760    G/C
rs1351519463 chr7:102405754    G/A
rs922259473 chr7:102405753    A/G
rs1429904758 chr20:38516608    CA/C
rs901320936 chr20:38516614    T/C
rs1408359821 chr7:102405766    T/C
rs1554571744 chr7:102405762    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CAMSAP1
chr9:138763212(-) A-I      intronic
chr9:138790294(-) A-I      intronic
chr9:138790273(-) A-I      intronic
chr9:138751331(-) A-I      intronic
chr9:138790247(-) A-I      intronic
chr9:138789273(-) A-I      intronic
chr9:138789255(-) A-I      intronic
chr9:138768772(-) A-I      intronic
chr9:138768747(-) A-I      intronic
chr9:138752442(-) A-I      intronic
chr9:138763732(-) A-I      intronic
chr9:138763154(-) A-I      intronic
chr9:138760637(-) A-I      intronic
chr9:138747031(-) A-I      intronic
chr9:138747054(-) A-I      intronic
chr9:138747057(-) A-I      intronic
chr9:138747478(-) A-I      intronic
chr9:138763215(-) A-I      intronic
chr9:138768746(-) A-I      intronic
chr9:138763218(-) A-I      intronic
chr9:138760601(-) A-I      intronic
chr9:138793383(-) A-I      intronic
chr9:138792102(-) A-I      intronic
chr9:138791974(-) A-I      intronic
chr9:138791907(-) A-I      intronic
chr9:138747479(-) A-I      intronic
chr9:138762435(-) A-I      intronic
chr9:138792036(-) A-I      intronic
chr9:138746976(-) A-I      intronic
chr9:138751879(-) A-I      intronic
chr9:138709406(-) A-I      intronic
chr9:138767819(-) A-I      intronic
chr9:138752361(-) A-I      intronic
chr9:138751403(-) A-I      intronic
chr9:138753244(-) A-I      intronic
chr9:138753371(-) A-I      intronic
chr9:138746447(-) A-I      intronic
chr9:138760627(-) A-I      intronic
chr9:138763907(-) A-I      intronic
chr9:138792150(-) A-I      intronic
chr9:138767904(-) A-I      intronic
chr9:138769467(-) A-I      intronic
chr9:138746966(-) A-I      intronic
chr9:138763848(-) A-I      intronic
chr9:138709491(-) A-I      intronic
chr9:138735091(-) A-I      intronic
chr9:138751443(-) A-I      intronic
chr9:138792699(-) A-I      intronic
chr9:138762469(-) A-I      intronic
chr9:138760639(-) A-I      intronic
chr9:138763233(-) A-I      intronic
chr9:138751377(-) A-I      intronic
chr9:138763253(-) A-I      intronic
chr9:138747364(-) A-I      intronic
chr9:138792350(-) A-I      intronic
chr9:138760568(-) A-I      intronic
chr9:138751416(-) A-I      intronic
chr9:138763110(-) A-I      intronic
chr9:138768853(-) A-I      intronic
chr9:138747504(-) A-I      intronic
chr9:138793377(-) A-I      intronic
chr9:138769455(-) A-I      intronic
chr9:138760594(-) A-I      intronic
chr9:138761092(-) A-I      intronic
chr9:138767993(-) A-I      intronic
chr9:138768041(-) A-I      intronic
chr9:138761104(-) A-I      intronic
chr9:138746586(-) A-I      intronic
chr9:138768012(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CAMSAP1
chr9:138701760-138701761(-) m6A 3'UTR       27773535
chr9:138701767-138701768(-) m6A 3'UTR       27773535
chr9:138701798-138701799(-) m6A 3'UTR       27773535//22608085
chr9:138701841-138701842(-) m6A 3'UTR       27773535//22608085
chr9:138701937-138701938(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr9:138701977-138701978(-) m6A 3'UTR       24284625//25456834//24981863
chr9:138702458-138702459(-) m6A 3'UTR//exon       25456834//24981863
chr9:138702509-138702510(-) m6A 3'UTR//exon       24981863//27773535
chr9:138702697-138702698(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr9:138702984-138702985(-) m6A 3'UTR//exon       24284625//24209618//27773535
chr9:138702997-138702998(-) m6A 3'UTR//exon       24284625//24209618//27773535//22608085
chr9:138703020-138703021(-) m6A 3'UTR//exon       24284625//24209618//27773535//22608085
chr9:138703119-138703120(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138703165-138703166(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:138703249-138703250(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:138703274-138703275(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138703281-138703282(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138703301-138703302(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138703326-138703327(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138703349-138703350(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138706966-138706967(-) m6A CDS//exon       24284625//27773535
chr9:138707024-138707025(-) m6A CDS//exon       24284625
chr9:138707780-138707781(-) m6A CDS//exon//intron       24284625//27773535
chr9:138707788-138707789(-) m6A CDS//exon//intron       24284625//27773535
chr9:138707794-138707795(-) m6A CDS//exon//intron       24284625//27773535
chr9:138709860-138709861(-) m6A CDS//exon       24284625
chr9:138709907-138709908(-) m6A CDS//exon       -
chr9:138709951-138709952(-) m6A exon//intron       -
chr9:138709983-138709984(-) m6A exon//intron       -
chr9:138710444-138710445(-) m6A CDS//exon       24284625//24209618//24981863//27371828//27773536
chr9:138710986-138710987(-) m6A CDS//exon       24284625//25456834//27371828//27773536
chr9:138712733-138712734(-) m6A CDS//exon       24284625//25456834//27773535//27371828//27773536
chr9:138712796-138712797(-) m6A CDS//exon       24284625//25456834//27773535//27371828
chr9:138712971-138712972(-) m6A CDS//exon       24284625//24981863//27371828//22608085
chr9:138713054-138713055(-) m6A CDS//exon       24284625//24981863//27371828//22608085
chr9:138713066-138713067(-) m6A CDS//exon       24284625//24981863//27371828//22608085
chr9:138713104-138713105(-) m6A CDS//exon       24284625//24981863//27371828//22575960//22608085
chr9:138713142-138713143(-) m6A CDS//exon       24284625//24981863//27371828//22575960//22608085
chr9:138713171-138713172(-) m6A CDS//exon       24284625//24981863//27371828//22608085
chr9:138713309-138713310(-) m6A CDS//exon       24284625
chr9:138713418-138713419(-) m6A CDS//exon       24284625
chr9:138713480-138713481(-) m6A CDS//exon       24284625//25456834//24981863//27371828//22575960//22608085
chr9:138713540-138713541(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138713582-138713583(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138713639-138713640(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138713646-138713647(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138713669-138713670(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr9:138713988-138713989(-) m6A CDS//exon       24284625//24981863//27371828//27773536
chr9:138714018-138714019(-) m6A CDS//exon       24284625//24981863//27371828//27773536
chr9:138714034-138714035(-) m6A CDS//exon       24284625//24981863//27371828//27773536
chr9:138714155-138714156(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:138714163-138714164(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:138714179-138714180(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138714190-138714191(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138714275-138714276(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138714312-138714313(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138714377-138714378(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22575960//22608085
chr9:138714424-138714425(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22575960//22608085
chr9:138714486-138714487(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:138714502-138714503(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138714507-138714508(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138714561-138714562(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138714649-138714650(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138714764-138714765(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138714772-138714773(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:138714962-138714963(-) m6A CDS//exon       24284625//24981863//27773535//27371828//22608085
chr9:138715001-138715002(-) m6A CDS//exon       24284625//24981863//27773535//27371828
chr9:138715799-138715800(-) m6A CDS//exon       24284625//24981863
chr9:138716642-138716643(-) m6A CDS//exon       24284625
chr9:138716668-138716669(-) m6A CDS//exon       24284625
chr9:138716674-138716675(-) m6A CDS//exon       24284625
chr9:138716715-138716716(-) m6A CDS//exon       24284625
chr9:138719263-138719264(-) m6A CDS       24284625
chr9:138719337-138719338(-) m6A CDS       24284625
chr9:138719424-138719425(-) m6A CDS       24284625
chr9:138741721-138741722(-) m6A exon//intron       -
chr9:138749929-138749930(-) Cm intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548o-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
CAMSAP1
Chromatin K562 cells     -
Cytoplasm Cell line (HeLa)     22319583
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Cell line (HeLa)     22319583

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548o-3p
Interactor2: CAMSAP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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