Detail Information

Basic Information:


  VIRBase ID:  

HHID00070559

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548o-3p:           ZNF217:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548o-3p ZNF217
miRBase
Accession/Entrez ID		 MIMAT0005919 7764
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ZABC1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548o-3p
rs1339101861 chr20:38516618    G/T
rs1456728168 chr20:38516617    A/G
rs1273591644 chr7:102405749    C/T
rs1307755111 chr7:102405760    G/C
rs1351519463 chr7:102405754    G/A
rs922259473 chr7:102405753    A/G
rs1429904758 chr20:38516608    CA/C
rs901320936 chr20:38516614    T/C
rs1408359821 chr7:102405766    T/C
rs1554571744 chr7:102405762    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF217
chr20:52186437(-) A-I      intronic
chr20:52186141(-) A-I      intronic
chr20:52186106(-) A-I      intronic
chr20:52186102(-) A-I      intronic
chr20:52188895(-) A-I      intronic
chr20:52190230(-) A-I      intronic
chr20:52190166(-) A-I      intronic
chr20:52190167(-) A-I      intronic
chr20:52190168(-) A-I      intronic
chr20:52189714(-) A-I      intronic
chr20:52189709(-) A-I      intronic
chr20:52189697(-) A-I      intronic
chr20:52190171(-) A-I      intronic
chr20:52188905(-) A-I      intronic
chr20:52186101(-) A-I      intronic
chr20:52188902(-) A-I      intronic
chr20:52186155(-) A-I      intronic
chr20:52190165(-) A-I      intronic
chr20:52189786(-) A-I      intronic
chr20:52189734(-) A-I      intronic
chr20:52191222(-) A-I      intronic
chr20:52191199(-) A-I      intronic
chr20:52191171(-) A-I      intronic
chr20:52191166(-) A-I      intronic
chr20:52191086(-) A-I      intronic
chr20:52191077(-) A-I      intronic
chr20:52190557(-) A-I      intronic
chr20:52190527(-) A-I      intronic
chr20:52190029(-) A-I      intronic
chr20:52189905(-) A-I      intronic
chr20:52189870(-) A-I      intronic
chr20:52189839(-) A-I      intronic
chr20:52189827(-) A-I      intronic
chr20:52189791(-) A-I      intronic
chr20:52189773(-) A-I      intronic
chr20:52190482(-) A-I      intronic
chr20:52190365(-) A-I      intronic
chr20:52190351(-) A-I      intronic
chr20:52190277(-) A-I      intronic
chr20:52190201(-) A-I      intronic
chr20:52190199(-) A-I      intronic
chr20:52190193(-) A-I      intronic
chr20:52189765(-) A-I      intronic
chr20:52189759(-) A-I      intronic
chr20:52189729(-) A-I      intronic
chr20:52189727(-) A-I      intronic
chr20:52190192(-) A-I      intronic
chr20:52185990(-) A-I      intronic
chr20:52186007(-) A-I      intronic
chr20:52186019(-) A-I      intronic
chr20:52186033(-) A-I      intronic
chr20:52186050(-) A-I      intronic
chr20:52186142(-) A-I      intronic
chr20:52186160(-) A-I      intronic
chr20:52186173(-) A-I      intronic
chr20:52188949(-) A-I      intronic
chr20:52188947(-) A-I      intronic
chr20:52188939(-) A-I      intronic
chr20:52188890(-) A-I      intronic
chr20:52190191(-) A-I      intronic
chr20:52188822(-) A-I      intronic
chr20:52190142(-) A-I      intronic
chr20:52186196(-) A-I      intronic
chr20:52190135(-) A-I      intronic
chr20:52220133(-) A-I      intronic
chr20:52188782(-) A-I      intronic
chr20:52188774(-) A-I      intronic
chr20:52188127(-) A-I      intronic
chr20:52188124(-) A-I      intronic
chr20:52185989(-) A-I      intronic
chr20:52188108(-) A-I      intronic
chr20:52188082(-) A-I      intronic
chr20:52188068(-) A-I      intronic
chr20:52188055(-) A-I      intronic
chr20:52188051(-) A-I      intronic
chr20:52188037(-) A-I      intronic
chr20:52186461(-) A-I      intronic
chr20:52186455(-) A-I      intronic
chr20:52186430(-) A-I      intronic
chr20:52186416(-) A-I      intronic
chr20:52186401(-) A-I      intronic
chr20:52220132(-) A-I      intronic
chr20:52220115(-) A-I      intronic
chr20:52186212(-) A-I      intronic
chr20:52191930(-) A-I      intronic
chr20:52191927(-) A-I      intronic
chr20:52191900(-) A-I      intronic
chr20:52191858(-) A-I      intronic
chr20:52191162(-) A-I      intronic
chr20:52191277(-) A-I      intronic
chr20:52188123(-) A-I      intronic
chr20:52188121(-) A-I      intronic
chr20:52186413(-) A-I      intronic
chr20:52190523(-) A-I      intronic
chr20:52190427(-) A-I      intronic
chr20:52190270(-) A-I      intronic
chr20:52190514(-) A-I      intronic
chr20:52190526(-) A-I      intronic
chr20:52191251(-) A-I      intronic
chr20:52186466(-) A-I      intronic
chr20:52220861(-) A-I      intronic
chr20:52220864(-) A-I      intronic
chr20:52190180(-) A-I      intronic
chr20:52188844(-) A-I      intronic
chr20:52191248(-) A-I      intronic
chr20:52190095(-) A-I      intronic
chr20:52191247(-) A-I      intronic
chr20:52191960(-) A-I      intronic
chr20:52188779(-) A-I      intronic
chr20:52191895(-) A-I      intronic
chr20:52191943(-) A-I      intronic
chr20:52191942(-) A-I      intronic
chr20:52188122(-) A-I      intronic
chr20:52218051(-) A-I      intronic
chr20:52189814(-) A-I      intronic
chr20:52189760(-) A-I      intronic
chr20:52220842(-) A-I      intronic
chr20:52188140(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF217
chr20:52190514(-) A-I intron -    22327324
chr20:52190526(-) A-I intron -    22327324

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF217
chr20:52183695-52183696(-) m6A 3'UTR       27773535
chr20:52183702-52183703(-) m6A 3'UTR       27773535
chr20:52184806-52184807(-) m6A 3'UTR       27773535
chr20:52184833-52184834(-) m6A 3'UTR       27773535
chr20:52184876-52184877(-) m6A 3'UTR       27773535
chr20:52184974-52184975(-) m6A 3'UTR       24981863//27773535
chr20:52184980-52184981(-) m6A 3'UTR       24981863//27773535
chr20:52185019-52185020(-) m6A 3'UTR       24981863//27773535
chr20:52185086-52185087(-) m6A 3'UTR       24981863
chr20:52185133-52185134(-) Cm 3'UTR       -
chr20:52185580-52185581(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:52185596-52185597(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:52185605-52185606(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:52185615-52185616(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:52185670-52185671(-) m6A 3'UTR//CDS       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52185692-52185693(-) m6A 3'UTR//CDS       24284625//24981863//28052920//27773535//22575960//22608085
chr20:52188287-52188288(-) m6A CDS//intron       27773535
chr20:52188337-52188338(-) m6A CDS//intron       27773535
chr20:52192395-52192396(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr20:52192429-52192430(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52192545-52192546(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52192609-52192610(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52192716-52192717(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192727-52192728(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192734-52192735(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192742-52192743(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192769-52192770(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192836-52192837(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192876-52192877(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr20:52192983-52192984(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52193068-52193069(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52193077-52193078(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52193112-52193113(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52193147-52193148(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52193247-52193248(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr20:52193294-52193295(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr20:52193375-52193376(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr20:52193402-52193403(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52193431-52193432(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52193452-52193453(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52193642-52193643(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52193680-52193681(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52193727-52193728(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52193742-52193743(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52193768-52193769(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr20:52193811-52193812(-) m6A CDS       24981863//27773535//22608085
chr20:52198166-52198167(-) m6A CDS       25456834//24981863//27371828//27773536
chr20:52198209-52198210(-) m6A CDS       24981863//27773535
chr20:52198309-52198310(-) m6A CDS       27773535
chr20:52198359-52198360(-) m6A CDS       27773535//27371828
chr20:52198549-52198550(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr20:52198574-52198575(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr20:52198614-52198615(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr20:52198641-52198642(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr20:52198804-52198805(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52198836-52198837(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52198920-52198921(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52198959-52198960(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//22608085
chr20:52199017-52199018(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr20:52199022-52199023(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085
chr20:52199083-52199084(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr20:52199119-52199120(-) m6A CDS       24284625//24981863//27773535//22608085
chr20:52199129-52199130(-) m6A CDS       24284625//27773535//22608085
chr20:52199148-52199149(-) m6A CDS       24284625//27773535//22608085
chr20:52199238-52199239(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr20:52199342-52199343(-) m6A CDS       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52199377-52199378(-) m6A 5'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:52199452-52199453(-) m6A 5'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52199486-52199487(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52199505-52199506(-) m6A 5'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr20:52199554-52199555(-) m6A 5'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:52199581-52199582(-) m6A 5'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:52199625-52199626(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr20:52199634-52199635(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr20:52199651-52199652(-) m6A 5'UTR//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr20:52210371-52210372(-) m6A 5'UTR//intron       25456834//24981863//27371828//22608085
chr20:52214190-52214191(-) m6A exon//intron       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548o-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
ZNF217
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548o-3p
Interactor2: ZNF217

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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