Basic Information:

  VIRBase ID:  

HHID00070533

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548n:  MIMAT0005916          OTUD1:  NM_001145373     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548n	OTUD1
miRBase Accession/Entrez ID	MIMAT0005916	220213
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	DUBA7//OTDC1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548n	rs1167799411 chr7:34940804    A/G rs1349024540 chr7:34940825    G/C rs1440338026 chr7:34940814    C/G rs1440338026 chr7:34940814    C/T rs1014154255 chr7:34940819    A/G rs1170899735 chr7:34940820    C/T rs541369935 chr7:34940820    CT/C

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	OTUD1	chr10:23728533-23728534(+) m6A CDS       24209618 chr10:23728960-23728961(+) m6A CDS       24209618//25456834//24981863//22575960//22608085 chr10:23729287-23729288(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr10:23729380-23729381(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr10:23729675-23729676(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:23729735-23729736(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:23729768-23729769(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:23729813-23729814(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:23729843-23729844(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr10:23729898-23729899(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr10:23729926-23729927(+) m6A 3'UTR       24284625//24209618//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548n	Exosome Plasma     23663360 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Fibroblasts|Mesenchymal stem cells     -
	OTUD1	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548n
Interactor2: OTUD1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.