Detail Information

Basic Information:


  VIRBase ID:  

HHID00070502

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548n:           PPIL4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548n PPIL4
miRBase
Accession/Entrez ID		 MIMAT0005916 85313
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HDCME13P

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548n
rs1167799411 chr7:34940804    A/G
rs1349024540 chr7:34940825    G/C
rs1440338026 chr7:34940814    C/G
rs1440338026 chr7:34940814    C/T
rs1014154255 chr7:34940819    A/G
rs1170899735 chr7:34940820    C/T
rs541369935 chr7:34940820    CT/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PPIL4
chr6:149852936(-) A-I      intronic
chr6:149852898(-) A-I      intronic
chr6:149852888(-) A-I      intronic
chr6:149827898(-) A-I      intronic
chr6:149827877(-) A-I      intronic
chr6:149827879(-) A-I      intronic
chr6:149852917(-) A-I      intronic
chr6:149852943(-) A-I      intronic
chr6:149852911(-) A-I      intronic
chr6:149843846(-) A-I      intronic
chr6:149843854(-) A-I      intronic
chr6:149833994(-) A-I      intronic
chr6:149834017(-) A-I      intronic
chr6:149827855(-) A-I      intronic
chr6:149843860(-) A-I      intronic
chr6:149843877(-) A-I      intronic
chr6:149843905(-) A-I      intronic
chr6:149843942(-) A-I      intronic
chr6:149843950(-) A-I      intronic
chr6:149843952(-) A-I      intronic
chr6:149843953(-) A-I      intronic
chr6:149843975(-) A-I      intronic
chr6:149844574(-) A-I      intronic
chr6:149844664(-) A-I      intronic
chr6:149827484(-) A-I      intronic
chr6:149827496(-) A-I      intronic
chr6:149827551(-) A-I      intronic
chr6:149827956(-) A-I      intronic
chr6:149852352(-) A-I      intronic
chr6:149852418(-) A-I      intronic
chr6:149852419(-) A-I      intronic
chr6:149845851(-) A-I      intronic
chr6:149845864(-) A-I      intronic
chr6:149849219(-) A-I      intronic
chr6:149850664(-) A-I      intronic
chr6:149850799(-) A-I      intronic
chr6:149850823(-) A-I      intronic
chr6:149851623(-) A-I      intronic
chr6:149861664(-) A-I      intronic
chr6:149831816(-) A-I      intronic
chr6:149827562(-) A-I      intronic
chr6:149861603(-) A-I      intronic
chr6:149831839(-) A-I      intronic
chr6:149833909(-) A-I      intronic
chr6:149833936(-) A-I      intronic
chr6:149833951(-) A-I      intronic
chr6:149860079(-) A-I      intronic
chr6:149851712(-) A-I      intronic
chr6:149852462(-) A-I      intronic
chr6:149852615(-) A-I      intronic
chr6:149852646(-) A-I      intronic
chr6:149852890(-) A-I      intronic
chr6:149852921(-) A-I      intronic
chr6:149851719(-) A-I      intronic
chr6:149852241(-) A-I      intronic
chr6:149834011(-) A-I      intronic
chr6:149834039(-) A-I      intronic
chr6:149834053(-) A-I      intronic
chr6:149853093(-) A-I      intronic
chr6:149853782(-) A-I      intronic
chr6:149853867(-) A-I      intronic
chr6:149859177(-) A-I      intronic
chr6:149859244(-) A-I      intronic
chr6:149851629(-) A-I      intronic
chr6:149859345(-) A-I      intronic
chr6:149860151(-) A-I      intronic
chr6:149861588(-) A-I      intronic
chr6:149834278(-) A-I      intronic
chr6:149843834(-) A-I      intronic
chr6:149860156(-) A-I      intronic
chr6:149860158(-) A-I      intronic
chr6:149860159(-) A-I      intronic
chr6:149860256(-) A-I      intronic
chr6:149860606(-) A-I      intronic
chr6:149860616(-) A-I      intronic
chr6:149860687(-) A-I      intronic
chr6:149860703(-) A-I      intronic
chr6:149861153(-) A-I      intronic
chr6:149861208(-) A-I      intronic
chr6:149827948(-) A-I      intronic
chr6:149835640(-) A-I      intronic
chr6:149861613(-) A-I      intronic
chr6:149860634(-) A-I      intronic
chr6:149843887(-) A-I      intronic
chr6:149845914(-) A-I      intronic
chr6:149835634(-) A-I      intronic
chr6:149861094(-) A-I      intronic
chr6:149834058(-) A-I      intronic
chr6:149852328(-) A-I      intronic
chr6:149845916(-) A-I      intronic
chr6:149860239(-) A-I      intronic
chr6:149831778(-) A-I      intronic
chr6:149852334(-) A-I      intronic
chr6:149834150(-) A-I      intronic
chr6:149860013(-) A-I      intronic
chr6:149860802(-) A-I      intronic
chr6:149852960(-) A-I      intronic
chr6:149845956(-) A-I      intronic
chr6:149861040(-) A-I      intronic
chr6:149831875(-) A-I      intronic
chr6:149834151(-) A-I      intronic
chr6:149827601(-) A-I      intronic
chr6:149827904(-) A-I      intronic
chr6:149861585(-) A-I      intronic
chr6:149852878(-) A-I      intronic
chr6:149832637(-) A-I      intronic
chr6:149834356(-) A-I      intronic
chr6:149861182(-) A-I      intronic
chr6:149853076(-) A-I      intronic
chr6:149827852(-) A-I      intronic
chr6:149850816(-) A-I      intronic
chr6:149834057(-) A-I      intronic
chr6:149833944(-) A-I      intronic
chr6:149827358(-) A-I      intronic
chr6:149845926(-) A-I      intronic
chr6:149860613(-) A-I      intronic
chr6:149833987(-) A-I      intronic
chr6:149860788(-) A-I      intronic
chr6:149859235(-) A-I      intronic
chr6:149834265(-) A-I      intronic
chr6:149834074(-) A-I      intronic
chr6:149852970(-) A-I      intronic
chr6:149843880(-) A-I      intronic
chr6:149834263(-) A-I      intronic
chr6:149834277(-) A-I      intronic
chr6:149839009(-) A-I      intronic
chr6:149846023(-) A-I      intronic
chr6:149834365(-) A-I      intronic
chr6:149861009(-) A-I      intronic
chr6:149827895(-) A-I      intronic
chr6:149833908(-) A-I      intronic
chr6:149860684(-) A-I      intronic
chr6:149860695(-) A-I      intronic
chr6:149852628(-) A-I      intronic
chr6:149834062(-) A-I      intronic
chr6:149834480(-) A-I      intronic
chr6:149831096(-) A-I      intronic
chr6:149860758(-) A-I      intronic
chr6:149834438(-) A-I      intronic
chr6:149828006(-) A-I      intronic
chr6:149861738(-) A-I      intronic
chr6:149833990(-) A-I      intronic
chr6:149849385(-) A-I      intronic
chr6:149827532(-) A-I      intronic
chr6:149860697(-) A-I      intronic
chr6:149852889(-) A-I      intronic
chr6:149834059(-) A-I      intronic
chr6:149834421(-) A-I      intronic
chr6:149835555(-) A-I      intronic
chr6:149827371(-) A-I      intronic
chr6:149853864(-) A-I      intronic
chr6:149861109(-) A-I      intronic
chr6:149834359(-) A-I      intronic
chr6:149834495(-) A-I      intronic
chr6:149834007(-) A-I      intronic
chr6:149860094(-) A-I      intronic
chr6:149835525(-) A-I      intronic
chr6:149844824(-) A-I      intronic
chr6:149834337(-) A-I      intronic
chr6:149846031(-) A-I      intronic
chr6:149859366(-) A-I      intronic
chr6:149827808(-) A-I      intronic
chr6:149843780(-) A-I      intronic
chr6:149852633(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PPIL4
chr6:149860695(-) A-I intron -    22327324
chr6:149827356(-) A-G intron -    22484847
chr6:149827358(-) A-G intron -    22484847
chr6:149827370(-) A-G intron -    22484847
chr6:149827380(-) A-G intron -    22484847
chr6:149827423(-) A-G intron -    22484847
chr6:149827508(-) A-G intron -    22484847
chr6:149827532(-) A-G intron -    22484847
chr6:149827545(-) A-G intron -    22484847
chr6:149833990(-) A-G intron -    22484847
chr6:149834150(-) A-G intron -    22484847
chr6:149834151(-) A-G intron -    22484847
chr6:149834263(-) A-G intron -    22484847
chr6:149834265(-) A-G intron -    22484847
chr6:149835555(-) A-G intron -    22484847
chr6:149841978(-) T-C intron -    22484847
chr6:149843880(-) A-G intron -    22484847
chr6:149843887(-) A-G intron -    22484847
chr6:149844719(-) A-G intron -    22484847
chr6:149844821(-) A-G intron -    22484847
chr6:149844824(-) A-G intron -    22484847
chr6:149845914(-) A-G intron -    22484847
chr6:149845916(-) A-G intron -    22484847
chr6:149845926(-) A-G intron -    22484847
chr6:149845955(-) A-G intron -    22484847
chr6:149845956(-) A-G intron -    22484847
chr6:149846031(-) A-G intron -    22484847
chr6:149852328(-) A-G intron -    22484847
chr6:149852930(-) A-G intron -    22484847
chr6:149852970(-) A-G intron -    22484847
chr6:149860094(-) A-G intron -    22484847
chr6:149860147(-) A-G intron -    22484847
chr6:149860150(-) A-G intron -    22484847
chr6:149860153(-) A-G intron -    22484847
chr6:149860613(-) A-G intron -    22484847
chr6:149860684(-) A-G intron -    22484847
chr6:149860695(-) A-G intron -    22484847
chr6:149860802(-) A-G intron -    22484847
chr6:149861094(-) A-G intron -    22484847
chr6:149861100(-) A-G intron -    22484847
chr6:149861182(-) A-G intron -    22484847
chr6:149861183(-) A-G intron -    22484847
chr6:149861189(-) A-G intron -    22484847
chr6:149861596(-) A-G intron -    22484847
chr6:149861738(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PPIL4
chr6:149825932-149825933(-) m6A 3'UTR       27773535
chr6:149825947-149825948(-) m6A 3'UTR       27773535
chr6:149825983-149825984(-) m6A 3'UTR       27773535
chr6:149826416-149826417(-) m6A 3'UTR       27773535
chr6:149826643-149826644(-) m6A CDS       24981863//28052920//27773535//27371828//22608085
chr6:149826680-149826681(-) m6A CDS       24981863//28052920//27773535//22608085
chr6:149826748-149826749(-) m6A CDS       24981863//27773535//22608085
chr6:149826755-149826756(-) m6A CDS       24981863//27773535//22608085
chr6:149826760-149826761(-) m6A CDS       24981863//27773535//22608085
chr6:149826780-149826781(-) m6A CDS       24981863//27773535//22608085
chr6:149833318-149833319(-) m6A CDS       24981863//27773535//22608085
chr6:149833352-149833353(-) m6A CDS       24981863//27773535//22608085
chr6:149833365-149833366(-) m6A CDS       24981863//27773535//22608085
chr6:149833399-149833400(-) m6A CDS       24981863//27773535//22608085
chr6:149838494-149838495(-) m6A 5'UTR//CDS       24981863//27773535//22608085
chr6:149838533-149838534(-) m6A 5'UTR//CDS       24981863//27773535
chr6:149838542-149838543(-) m6A 5'UTR//CDS       24981863//27773535
chr6:149847882-149847883(-) m6A CDS       24981863
chr6:149847904-149847905(-) m6A CDS       24981863
chr6:149854616-149854617(-) m6A CDS       24981863//27773535
chr6:149855822-149855823(-) m6A CDS       27773535
chr6:149855834-149855835(-) m6A CDS       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548n
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
PPIL4
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548n
Interactor2: PPIL4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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