Detail Information

Basic Information:


  VIRBase ID:  

HHID00069868

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1304-5p:           DDX3X:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1304-5p DDX3X
miRBase
Accession/Entrez ID		 MIMAT0005892 1654
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CAP-Rf//DBX//DDX14//DDX3//HLP2//MRX102//MRXSSB

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1304-5p
rs1360520725 chr11:93733726    C/T
rs1362552303 chr11:93733733    C/T
rs749880345 chr11:93733735    G/A
rs749880345 chr11:93733735    G/T
rs780506580 chr11:93733725    A/C
rs1411147958 chr11:93733742    C/T
rs748549386 chr11:93733740    C/A
rs76857625 chr11:93733744    A/G
rs779470949 chr11:93733739    C/T
rs780392471 chr11:93733739    C/CATTGAGCCCAGGGGTT
rs79759099 chr11:93733743    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DDX3X
chrX:41200368(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DDX3X
chrX:41192893-41192894(+) m6A 5'UTR//exon       24981863
chrX:41192928-41192929(+) m6A 5'UTR//exon       24981863//27773535
chrX:41192942-41192943(+) m1A 5'UTR//exon       26863196
chrX:41192973-41192974(+) m6A 5'UTR//exon//intron       24981863//27773535
chrX:41192979-41192980(+) m6A 5'UTR//exon//intron       24981863//27773535
chrX:41193134-41193135(+) m6A 5'UTR//intron       24284625//24209618//24981863
chrX:41193148-41193149(+) m6A 5'UTR//intron       24284625//24209618//24981863
chrX:41193191-41193192(+) m6A 5'UTR//intron       24284625//24209618//24981863
chrX:41193197-41193198(+) m6A 5'UTR//intron       24284625//24209618//24981863
chrX:41193229-41193230(+) m6A 5'UTR//intron       24284625//24981863
chrX:41193247-41193248(+) m6A 5'UTR//intron       24284625//24981863
chrX:41193274-41193275(+) m6A 5'UTR//intron       24284625//24981863
chrX:41193453-41193454(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863//26404942//22575960//22608085
chrX:41193478-41193479(+) m6A 5'UTR//exon//intron       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chrX:41193542-41193543(+) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chrX:41193982-41193983(+) m6A exon//intron       24981863
chrX:41196673-41196674(+) m6A CDS//exon       24284625//24981863
chrX:41196679-41196680(+) m6A CDS//exon       24284625//24981863
chrX:41198318-41198319(+) m6A CDS//exon//intron       24981863//26404942
chrX:41200751-41200752(+) m6A CDS//exon       24981863//26404942//22575960
chrX:41201833-41201834(+) m6A CDS//exon//intron       22575960
chrX:41201876-41201877(+) m6A CDS//exon//intron       22575960
chrX:41201903-41201904(+) m6A CDS//exon//intron       22575960
chrX:41201992-41201993(+) m6A CDS//exon//intron       22575960
chrX:41202505-41202506(+) m6A CDS//exon//intron       26404942//22575960
chrX:41203308-41203309(+) m6A CDS//exon//intron       22575960
chrX:41203561-41203562(+) m6A CDS//exon//intron       22575960
chrX:41203642-41203643(+) m6A CDS//exon//intron       22575960
chrX:41204504-41204505(+) m6A CDS//exon//intron       22575960
chrX:41206226-41206227(+) m6A CDS//intron       26404942
chrX:41206596-41206597(+) m6A CDS//intron       24209618//26404942//22575960
chrX:41207001-41207002(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chrX:41207017-41207018(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chrX:41207037-41207038(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chrX:41207061-41207062(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chrX:41207144-41207145(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chrX:41207179-41207180(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085
chrX:41207231-41207232(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085
chrX:41207296-41207297(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535
chrX:41207373-41207374(+) m6A 3'UTR//intron       26404942//27773535
chrX:41207390-41207391(+) m6A 3'UTR//intron       26404942//27773535
chrX:41207459-41207460(+) m6A 3'UTR//intron       26404942
chrX:41207512-41207513(+) m6A 3'UTR//intron       26404942//27773535
chrX:41207562-41207563(+) m6A 3'UTR//intron       26404942//27773535
chrX:41207986-41207987(+) m6A 3'UTR//intron       22575960
chrX:41208065-41208066(+) m6A 3'UTR//intron       22575960
chrX:41208946-41208947(+) m6A 3'UTR//intron       27773535
chrX:41208968-41208969(+) m6A 3'UTR//intron       27773535
chrX:41209013-41209014(+) m6A 3'UTR//intron       27773535
chrX:41209081-41209082(+) m6A 3'UTR//intron       27773535
chrX:41209091-41209092(+) m6A 3'UTR//intron       27773535
chrX:41209199-41209200(+) m6A 3'UTR//intron       27773535
chrX:41209327-41209328(+) m6A 3'UTR//intron       27773535
chrX:41209349-41209350(+) m6A 3'UTR//intron       27773535
chrX:41209451-41209452(+) m6A 3'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1304-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
DDX3X
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1304-5p
Interactor2: DDX3X

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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