Detail Information

Basic Information:


  VIRBase ID:  

HHID00069864

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548l:           NEXMIF:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548l NEXMIF
miRBase
Accession/Entrez ID		 MIMAT0005889 340533
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - KIAA2022//KIDLIA//MRX98//XPN

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548l
rs13447640 chr11:94466555    G/A
rs13447640 chr11:94466555    G/T
rs1448088579 chr11:94466547    C/A
rs148377174 chr11:94466545    G/A
rs148377174 chr11:94466545    G/T
rs759436685 chr11:94466554    C/T
rs762603325 chr11:94466558    A/C
rs1289439065 chr11:94466561    AC/A
rs1331201116 chr11:94466562    C/G
rs1410886742 chr11:94466561    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NEXMIF
chrX:73970996(-) A-I      intronic
chrX:74027395(-) A-I      intronic
chrX:74030408(-) A-I      intronic
chrX:74027541(-) A-I      intronic
chrX:74030382(-) A-I      intronic
chrX:74027394(-) A-I      intronic
chrX:74020929(-) A-I      intronic
chrX:74027387(-) A-I      intronic
chrX:73971051(-) A-I      intronic
chrX:74040438(-) A-I      intronic
chrX:74027476(-) A-I      intronic
chrX:74027548(-) A-I      intronic
chrX:74030381(-) A-I      intronic
chrX:74040850(-) A-I      intronic
chrX:74040679(-) A-I      intronic
chrX:74028067(-) A-I      intronic
chrX:74028157(-) A-I      intronic
chrX:74028127(-) A-I      intronic
chrX:74028122(-) A-I      intronic
chrX:74028091(-) A-I      intronic
chrX:74030414(-) A-I      intronic
chrX:74045401(-) A-I      intronic
chrX:74028115(-) A-I      intronic
chrX:74027480(-) A-I      intronic
chrX:74030468(-) A-I      intronic
chrX:74028117(-) A-I      intronic
chrX:73967723(-) A-I      intronic
chrX:74030466(-) A-I      intronic
chrX:73970797(-) A-I      intronic
chrX:74027462(-) A-I      intronic
chrX:74045425(-) A-I      intronic
chrX:73980841(-) A-I      intronic
chrX:73970828(-) A-I      intronic
chrX:74027995(-) A-I      intronic
chrX:74000259(-) A-I      intronic
chrX:73971744(-) A-I      intronic
chrX:74000368(-) A-I      intronic
chrX:74030415(-) A-I      intronic
chrX:74027471(-) A-I      intronic
chrX:74044495(-) A-I      intronic
chrX:74027477(-) A-I      intronic
chrX:74000411(-) A-I      intronic
chrX:74027193(-) A-I      intronic
chrX:74028090(-) A-I      intronic
chrX:73970943(-) A-I      intronic
chrX:74027466(-) A-I      intronic
chrX:74028192(-) A-I      intronic
chrX:74028047(-) A-I      intronic
chrX:73967722(-) A-I      intronic
chrX:74041597(-) A-I      intronic
chrX:73971008(-) A-I      intronic
chrX:73970871(-) A-I      intronic
chrX:73971835(-) A-I      intronic
chrX:74027571(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548l
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
NEXMIF
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548l
Interactor2: NEXMIF

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...