Basic Information:

  VIRBase ID:  

HHID00069753

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548l:  MIMAT0005889          GAS7:  NM_001130831     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-548l	GAS7
miRBase Accession/Entrez ID	MIMAT0005889	8522
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-548l	rs13447640 chr11:94466555    G/A rs13447640 chr11:94466555    G/T rs1448088579 chr11:94466547    C/A rs148377174 chr11:94466545    G/A rs148377174 chr11:94466545    G/T rs759436685 chr11:94466554    C/T rs762603325 chr11:94466558    A/C rs1289439065 chr11:94466561    AC/A rs1331201116 chr11:94466562    C/G rs1410886742 chr11:94466561    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GAS7	chr17:9832859(-) A-I      intronic chr17:9832860(-) A-I      intronic chr17:9832900(-) A-I      intronic chr17:9832903(-) A-I      intronic chr17:10066643(-) A-I      intronic chr17:10066661(-) A-I      intronic chr17:10069469(-) A-I      intronic chr17:10069519(-) A-I      intronic chr17:9832888(-) A-I      intronic chr17:9817688(-) A-I      3'UTR chr17:10069520(-) A-I      intronic chr17:9817711(-) A-I      3'UTR chr17:10069536(-) A-I      intronic chr17:9832999(-) A-I      intronic chr17:9833015(-) A-I      intronic chr17:9836331(-) A-I      intronic chr17:9836437(-) A-I      intronic chr17:9836483(-) A-I      intronic chr17:9841661(-) A-I      intronic chr17:9841685(-) A-I      intronic chr17:9843097(-) A-I      intronic chr17:9843115(-) A-I      intronic chr17:9843120(-) A-I      intronic chr17:9849113(-) A-I      intronic chr17:9850978(-) A-I      intronic chr17:9850998(-) A-I      intronic chr17:9910819(-) A-I      intronic chr17:9853264(-) A-I      intronic chr17:9853356(-) A-I      intronic chr17:9853376(-) A-I      intronic chr17:9853448(-) A-I      intronic chr17:9853746(-) A-I      intronic chr17:9853777(-) A-I      intronic chr17:9853782(-) A-I      intronic chr17:9982249(-) A-I      intronic chr17:9853791(-) A-I      intronic chr17:9855072(-) A-I      intronic chr17:9981616(-) A-I      intronic chr17:9972067(-) A-I      intronic chr17:9873827(-) A-I      intronic chr17:9873866(-) A-I      intronic chr17:9873867(-) A-I      intronic chr17:9873897(-) A-I      intronic chr17:9878514(-) A-I      intronic chr17:9881995(-) A-I      intronic chr17:9884546(-) A-I      intronic chr17:9900021(-) A-I      intronic chr17:9900023(-) A-I      intronic chr17:9909684(-) A-I      intronic chr17:9909785(-) A-I      intronic chr17:9909880(-) A-I      intronic chr17:9909883(-) A-I      intronic chr17:9910776(-) A-I      intronic chr17:9910817(-) A-I      intronic chr17:9969560(-) A-I      intronic chr17:9913638(-) A-I      intronic chr17:9915876(-) A-I      intronic chr17:10041144(-) A-I      intronic chr17:9916176(-) A-I      intronic chr17:9916262(-) A-I      intronic chr17:9916308(-) A-I      intronic chr17:9919578(-) A-I      intronic chr17:9919580(-) A-I      intronic chr17:9919700(-) A-I      intronic chr17:9920365(-) A-I      intronic chr17:9920774(-) A-I      intronic chr17:9920919(-) A-I      intronic chr17:9951453(-) A-I      intronic chr17:9951471(-) A-I      intronic chr17:9953014(-) A-I      intronic chr17:9953043(-) A-I      intronic chr17:9953059(-) A-I      intronic chr17:9953066(-) A-I      intronic chr17:9953086(-) A-I      intronic chr17:9953106(-) A-I      intronic chr17:10041348(-) A-I      intronic chr17:10070507(-) A-I      intronic chr17:10070512(-) A-I      intronic chr17:10070513(-) A-I      intronic chr17:10071081(-) A-I      intronic chr17:10071187(-) A-I      intronic chr17:10077751(-) A-I      intronic chr17:10085681(-) A-I      intronic chr17:10085696(-) A-I      intronic chr17:10085704(-) A-I      intronic chr17:9953142(-) A-I      intronic chr17:9953188(-) A-I      intronic chr17:9953204(-) A-I      intronic chr17:9959944(-) A-I      intronic chr17:9960021(-) A-I      intronic chr17:9909795(-) A-I      intronic chr17:10013880(-) A-I      intronic chr17:10013888(-) A-I      intronic chr17:10070467(-) A-I      intronic chr17:10085741(-) A-I      intronic chr17:10085758(-) A-I      intronic chr17:10089433(-) A-I      intronic chr17:10092180(-) A-I      intronic chr17:10046375(-) A-I      intronic chr17:10052623(-) A-I      intronic chr17:10052670(-) A-I      intronic chr17:10070447(-) A-I      intronic chr17:10066645(-) A-I      intronic chr17:10066646(-) A-I      intronic chr17:10066667(-) A-I      intronic chr17:9996803(-) A-I      intronic chr17:9998057(-) A-I      intronic chr17:9998064(-) A-I      intronic chr17:9996707(-) A-I      intronic chr17:9996704(-) A-I      intronic chr17:9996699(-) A-I      intronic chr17:9996684(-) A-I      intronic chr17:9824647(-) A-I      intronic chr17:9824653(-) A-I      intronic chr17:10013927(-) A-I      intronic chr17:10032757(-) A-I      intronic chr17:10036719(-) A-I      intronic chr17:10069375(-) A-I      intronic chr17:10069387(-) A-I      intronic chr17:10069438(-) A-I      intronic chr17:10069462(-) A-I      intronic chr17:10069473(-) A-I      intronic chr17:10069497(-) A-I      intronic chr17:10069505(-) A-I      intronic chr17:10069544(-) A-I      intronic chr17:10069545(-) A-I      intronic chr17:10069554(-) A-I      intronic chr17:10069568(-) A-I      intronic chr17:10040319(-) A-I      intronic chr17:9825087(-) A-I      intronic chr17:9825213(-) A-I      intronic chr17:9832907(-) A-I      intronic chr17:9832929(-) A-I      intronic chr17:9832997(-) A-I      intronic chr17:9817724(-) A-I      3'UTR chr17:9843065(-) A-I      intronic chr17:10058469(-) A-I      intronic chr17:10023990(-) A-I      intronic chr17:10078311(-) A-I      intronic chr17:10065236(-) A-I      intronic chr17:9941614(-) A-I      intronic chr17:9996774(-) A-I      intronic chr17:9853384(-) A-I      intronic chr17:9941566(-) A-I      intronic chr17:10047985(-) A-I      intronic chr17:9826363(-) A-I      intronic chr17:9878564(-) A-I      intronic chr17:10089813(-) A-I      intronic chr17:9824473(-) A-I      intronic chr17:9920236(-) A-I      intronic chr17:10078327(-) A-I      intronic chr17:10047992(-) A-I      intronic chr17:10085614(-) A-I      intronic chr17:9981587(-) A-I      intronic chr17:10069573(-) A-I      intronic chr17:9836887(-) A-I      intronic chr17:10064064(-) A-I      intronic chr17:10078307(-) A-I      intronic chr17:9959565(-) A-I      intronic chr17:9830682(-) A-I      intronic chr17:10070982(-) A-I      intronic chr17:10036577(-) A-I      intronic chr17:9824582(-) A-I      intronic chr17:9873690(-) A-I      intronic chr17:10040286(-) A-I      intronic chr17:10057925(-) A-I      intronic chr17:9824602(-) A-I      intronic chr17:9843055(-) A-I      intronic chr17:9993302(-) A-I      intronic chr17:9953209(-) A-I      intronic chr17:9838190(-) A-I      intronic chr17:10066490(-) A-I      intronic chr17:9836914(-) A-I      intronic chr17:9827553(-) A-I      intronic chr17:9838095(-) A-I      intronic chr17:10057699(-) A-I      intronic chr17:10093737(-) A-I      intronic chr17:9824707(-) A-I      intronic chr17:9908170(-) A-I      intronic chr17:9941661(-) A-I      intronic chr17:9830680(-) A-I      intronic chr17:9878550(-) A-I      intronic chr17:9853581(-) A-I      intronic chr17:10066594(-) A-I      intronic chr17:10066689(-) A-I      intronic chr17:10069612(-) A-I      intronic chr17:9853652(-) A-I      intronic chr17:10036580(-) A-I      intronic chr17:9999005(-) A-I      intronic chr17:9853318(-) A-I      intronic chr17:10066608(-) A-I      intronic chr17:9837155(-) A-I      intronic chr17:10090196(-) A-I      intronic chr17:9824706(-) A-I      intronic chr17:9959555(-) A-I      intronic chr17:10066604(-) A-I      intronic chr17:10089400(-) A-I      intronic chr17:9835626(-) A-I      intronic chr17:10063441(-) A-I      intronic chr17:9833073(-) A-I      intronic chr17:9817746(-) A-I      3'UTR chr17:9853244(-) A-I      intronic chr17:10036078(-) A-I      intronic chr17:10051848(-) A-I      intronic chr17:9817675(-) A-I      3'UTR chr17:9999068(-) A-I      intronic chr17:9843105(-) A-I      intronic chr17:9982259(-) A-I      intronic chr17:9817721(-) A-I      3'UTR chr17:10078436(-) A-I      intronic chr17:10066531(-) A-I      intronic chr17:10063227(-) A-I      intronic chr17:9919455(-) A-I      intronic chr17:10066688(-) A-I      intronic chr17:9931680(-) A-I      intronic chr17:10052518(-) A-I      intronic chr17:9817649(-) A-I      3'UTR chr17:9850939(-) A-I      intronic chr17:9836389(-) A-I      intronic chr17:9853798(-) A-I      intronic chr17:10066513(-) A-I      intronic chr17:10040379(-) A-I      intronic chr17:9841782(-) A-I      intronic chr17:10092024(-) A-I      intronic chr17:9817708(-) A-I      3'UTR chr17:9999013(-) A-I      intronic chr17:9838248(-) A-I      intronic chr17:9824667(-) A-I      intronic chr17:9824651(-) A-I      intronic chr17:10069583(-) A-I      intronic chr17:10071288(-) A-I      intronic chr17:9824638(-) A-I      intronic chr17:10063170(-) A-I      intronic chr17:10078323(-) A-I      intronic chr17:10036028(-) A-I      intronic chr17:10091411(-) A-I      intronic chr17:10082390(-) A-I      intronic chr17:9886651(-) A-I      intronic chr17:9853341(-) A-I      intronic chr17:9915847(-) A-I      intronic chr17:10092080(-) A-I      intronic chr17:10065214(-) A-I      intronic chr17:9919446(-) A-I      intronic chr17:10071198(-) A-I      intronic chr17:10063495(-) A-I      intronic chr17:10086900(-) A-I      intronic chr17:9959690(-) A-I      intronic chr17:9817738(-) A-I      3'UTR chr17:10057613(-) A-I      intronic chr17:10034817(-) A-I      intronic chr17:9836322(-) A-I      intronic chr17:9835694(-) A-I      intronic chr17:9817777(-) A-I      3'UTR chr17:9876770(-) A-I      intronic chr17:10057814(-) A-I      intronic chr17:10092236(-) A-I      intronic chr17:9960024(-) A-I      intronic chr17:10036069(-) A-I      intronic chr17:10065337(-) A-I      intronic chr17:9843197(-) A-I      intronic chr17:9908083(-) A-I      intronic chr17:9824644(-) A-I      intronic chr17:9817611(-) A-I      3'UTR chr17:10084577(-) A-I      intronic chr17:9817816(-) A-I      3'UTR chr17:10065136(-) A-I      intronic chr17:9853707(-) A-I      intronic chr17:10066709(-) A-I      intronic chr17:9817612(-) A-I      3'UTR chr17:10071235(-) A-I      intronic chr17:9920913(-) A-I      intronic chr17:10069518(-) A-I      intronic chr17:10094669(-) A-I      intronic chr17:10044601(-) A-I      intronic chr17:9835728(-) A-I      intronic chr17:9841565(-) A-I      intronic chr17:10046416(-) A-I      intronic chr17:10058470(-) A-I      intronic chr17:10038427(-) A-I      intronic chr17:9817748(-) A-I      3'UTR chr17:9835597(-) A-I      intronic chr17:9851022(-) A-I      intronic chr17:9982456(-) A-I      intronic chr17:10061781(-) A-I      intronic chr17:10014056(-) A-I      intronic chr17:9900230(-) A-I      intronic chr17:9913639(-) A-I      intronic chr17:10092094(-) A-I      intronic chr17:9853319(-) A-I      intronic chr17:10069432(-) A-I      intronic chr17:10069344(-) A-I      intronic chr17:9827761(-) A-I      intronic chr17:9874787(-) A-I      intronic chr17:10066715(-) A-I      intronic chr17:9916295(-) A-I      intronic chr17:9835574(-) A-I      intronic chr17:10045941(-) A-I      intronic chr17:9950049(-) A-I      intronic chr17:10063241(-) A-I      intronic chr17:10078429(-) A-I      intronic chr17:10069540(-) A-I      intronic chr17:10069479(-) A-I      intronic chr17:10043568(-) A-I      intronic chr17:9920364(-) A-I      intronic chr17:10065192(-) A-I      intronic chr17:9878506(-) A-I      intronic chr17:10089560(-) A-I      intronic chr17:9910891(-) A-I      intronic chr17:10013879(-) A-I      intronic chr17:9951422(-) A-I      intronic chr17:9973856(-) A-I      intronic chr17:10078268(-) A-I      intronic chr17:10069437(-) A-I      intronic chr17:10070640(-) A-I      intronic chr17:9830765(-) A-I      intronic chr17:9909851(-) A-I      intronic chr17:10063188(-) A-I      intronic chr17:10078996(-) A-I      intronic chr17:9824656(-) A-I      intronic chr17:9982461(-) A-I      intronic chr17:9951633(-) A-I      intronic chr17:9997914(-) A-I      intronic chr17:9853580(-) A-I      intronic chr17:9998904(-) A-I      intronic chr17:9831558(-) A-I      intronic chr17:9830509(-) A-I      intronic chr17:10065297(-) A-I      intronic chr17:9830692(-) A-I      intronic chr17:10063235(-) A-I      intronic chr17:9915883(-) A-I      intronic chr17:9855976(-) A-I      intronic chr17:10047950(-) A-I      intronic chr17:9835608(-) A-I      intronic chr17:9827693(-) A-I      intronic chr17:10071289(-) A-I      intronic chr17:9971828(-) A-I      intronic chr17:9920849(-) A-I      intronic chr17:9825032(-) A-I      intronic chr17:9853761(-) A-I      intronic chr17:9855977(-) A-I      intronic chr17:10058447(-) A-I      intronic chr17:9920910(-) A-I      intronic chr17:9994735(-) A-I      intronic chr17:10094370(-) A-I      intronic chr17:9914917(-) A-I      intronic chr17:9843204(-) A-I      intronic chr17:10032680(-) A-I      intronic chr17:9830775(-) A-I      intronic chr17:9914814(-) A-I      intronic chr17:9942998(-) A-I      intronic chr17:9841641(-) A-I      intronic chr17:10041444(-) A-I      intronic chr17:9855411(-) A-I      intronic chr17:10040309(-) A-I      intronic chr17:9915860(-) A-I      intronic chr17:9915193(-) A-I      intronic chr17:10055000(-) A-I      intronic chr17:9836239(-) A-I      intronic chr17:10065587(-) A-I      intronic chr17:10063263(-) A-I      intronic chr17:10040283(-) A-I      intronic chr17:10076896(-) A-I      intronic chr17:10066655(-) A-I      intronic chr17:9843126(-) A-I      intronic chr17:10061707(-) A-I      intronic chr17:9830720(-) A-I      intronic chr17:9838217(-) A-I      intronic chr17:9914488(-) A-I      intronic chr17:10017370(-) A-I      intronic chr17:9878484(-) A-I      intronic chr17:9915707(-) A-I      intronic chr17:9834639(-) A-I      intronic chr17:10069508(-) A-I      intronic chr17:10078362(-) A-I      intronic chr17:10065338(-) A-I      intronic chr17:9855983(-) A-I      intronic chr17:9920784(-) A-I      intronic chr17:9942155(-) A-I      intronic chr17:9953076(-) A-I      intronic chr17:10063314(-) A-I      intronic chr17:10067966(-) A-I      intronic chr17:9843106(-) A-I      intronic chr17:10034768(-) A-I      intronic chr17:9853924(-) A-I      intronic chr17:10079103(-) A-I      intronic chr17:9854998(-) A-I      intronic chr17:9826341(-) A-I      intronic chr17:10066105(-) A-I      intronic chr17:10066670(-) A-I      intronic chr17:9984706(-) A-I      intronic chr17:9878665(-) A-I      intronic chr17:9915743(-) A-I      intronic chr17:10035977(-) A-I      intronic chr17:9853360(-) A-I      intronic chr17:10063200(-) A-I      intronic chr17:9953171(-) A-I      intronic chr17:10046465(-) A-I      intronic chr17:9817815(-) A-I      3'UTR chr17:9817682(-) A-I      3'UTR chr17:9817615(-) A-I      3'UTR chr17:9817574(-) A-I      3'UTR chr17:9817641(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GAS7	chr17:10063170(-) A-I intron -    15342557 chr17:10063188(-) A-I intron -    15342557 chr17:10063200(-) A-I intron -    15342557 chr17:10063227(-) A-I intron -    15342557 chr17:10063235(-) A-I intron -    15342557 chr17:10063241(-) A-I intron -    15342557 chr17:10063263(-) A-I intron -    15342557 chr17:10063314(-) A-I intron -    15342557 chr17:10063495(-) A-I intron -    15342557 chr17:10064064(-) A-I intron -    15342557 chr17:10065136(-) A-I intron -    15342557 chr17:10065192(-) A-I intron -    15342557 chr17:10065214(-) A-I intron -    15342557 chr17:10065236(-) A-I intron -    15342557 chr17:10065297(-) A-I intron -    15342557 chr17:10065337(-) A-I intron -    15342557 chr17:10065338(-) A-I intron -    15342557 chr17:10065587(-) A-I intron -    15342557 chr17:10066105(-) A-I intron -    15342557 chr17:10066490(-) A-I intron -    15342557 chr17:10066513(-) A-I intron -    15342557 chr17:10066531(-) A-I intron -    15342557 chr17:10066594(-) A-I intron -    15342557 chr17:10066608(-) A-I intron -    15342557 chr17:10066670(-) A-I intron -    15342557 chr17:10066688(-) A-I intron -    15342557 chr17:10066689(-) A-I intron -    15342557 chr17:10066709(-) A-I intron -    15342557 chr17:10066715(-) A-I intron -    15342557 chr17:9817612(-) A-G exon 3'UTR    22484847 chr17:9817615(-) A-G exon 3'UTR    22484847 chr17:9817746(-) A-G exon 3'UTR    22484847 chr17:9817747(-) C-T exon 3'UTR    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GAS7	chr17:10101848-10101849(-) m6A 5'UTR       27371828 chr17:9820264-9820265(-) m6A 3'UTR       27371828 chr17:9820280-9820281(-) m6A 3'UTR       27371828 chr17:9820316-9820317(-) m6A 3'UTR//CDS       25456834//27371828 chr17:9820354-9820355(-) m6A 3'UTR//intron       25456834//27371828 chr17:9820396-9820397(-) m6A 3'UTR//intron       25456834//27371828 chr17:9820557-9820558(-) m6A CDS//exon//intron       25456834//27371828 chr17:9820608-9820609(-) m6A CDS//exon//intron       25456834//27371828 chr17:9820620-9820621(-) m6A CDS//exon//intron       25456834//27371828 chr17:9821337-9821338(-) m6A CDS//exon//intron       25456834//27371828 chr17:9828039-9828040(-) m6A exon//intron       27371828 chr17:9828827-9828828(-) m6A CDS//exon//intron       27371828 chr17:9828837-9828838(-) m6A CDS//exon//intron       27371828 chr17:9828870-9828871(-) m6A CDS//exon//intron       27371828 chr17:9828884-9828885(-) m6A CDS//exon//intron       27371828 chr17:9830030-9830031(-) m6A CDS//exon//intron       27371828 chr17:9830042-9830043(-) m6A CDS//exon//intron       27371828 chr17:9850258-9850259(-) m6A CDS//exon//intron       - chr17:9850271-9850272(-) m6A CDS//exon//intron       - chr17:9850295-9850296(-) m6A CDS//exon//intron       - chr17:9862302-9862303(-) m6A exon//intron       - chr17:9862528-9862529(-) m6A CDS//exon//intron       - chr17:9862570-9862571(-) m6A CDS//exon//intron       - chr17:9862606-9862607(-) m6A CDS//intron       - chr17:9862641-9862642(-) m6A 5'UTR//intron       - chr17:9873034-9873035(-) m6A CDS//intron       - chr17:9873055-9873056(-) m6A CDS//intron       - chr17:9885198-9885199(-) m6A CDS//exon//intron       - chr17:9939913-9939914(-) m6A 5'UTR//exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-548l	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	GAS7	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-548l
Interactor2: GAS7

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.