Basic Information:

  VIRBase ID:  

HHID00069693

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1299:  MIMAT0005887          CCDC88A:  NM_001135597     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1299	CCDC88A
miRBase Accession/Entrez ID	MIMAT0005887	55704
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	APE//GIRDIN//GIV//GRDN//HkRP1//KIAA1212//PEHO//PEHOL

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-1299	rs1009712608 chr9:40929012    C/T rs747216379 chr9:40929013    C/G rs747216379 chr9:40929013    C/T rs753922180 chr9:40928993    GAGGGTCTGAATGTTTGTCCC/G rs796108267 chr9:40929011    C/T rs796728500 chr9:40929010    T/C rs1042551075 chr9:40929028    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC88A	chr2:55529092(-) A-I      NonSyn:Met->Val chr2:55529106(-) A-I      NonSyn:Lys->Arg chr2:55529107(-) A-I      NonSyn:Lys->Glu chr2:55529128(-) A-I      NonSyn:Ile->Val chr2:55529123(-) A-I      Syn:Ser->Ser chr2:55529102(-) A-I      Syn:Glu->Glu chr2:55628331(-) A-I      intronic chr2:55524723(-) A-I      intronic chr2:55524724(-) A-I      intronic chr2:55524725(-) A-I      intronic chr2:55557527(-) A-I      intronic chr2:55607782(-) A-I      intronic chr2:55607781(-) A-I      intronic chr2:55524803(-) A-I      intronic chr2:55628374(-) A-I      intronic chr2:55628362(-) A-I      intronic chr2:55628344(-) A-I      intronic chr2:55607827(-) A-I      intronic chr2:55607824(-) A-I      intronic chr2:55607814(-) A-I      intronic chr2:55564929(-) A-I      intronic chr2:55579309(-) A-I      intronic chr2:55579386(-) A-I      intronic chr2:55579434(-) A-I      intronic chr2:55579444(-) A-I      intronic chr2:55579524(-) A-I      intronic chr2:55581434(-) A-I      intronic chr2:55581440(-) A-I      intronic chr2:55581471(-) A-I      intronic chr2:55593525(-) A-I      intronic chr2:55593581(-) A-I      intronic chr2:55596291(-) A-I      intronic chr2:55596322(-) A-I      intronic chr2:55596664(-) A-I      intronic chr2:55596716(-) A-I      intronic chr2:55598880(-) A-I      intronic chr2:55598888(-) A-I      intronic chr2:55598895(-) A-I      intronic chr2:55602753(-) A-I      intronic chr2:55602914(-) A-I      intronic chr2:55524234(-) A-I      intronic chr2:55608626(-) A-I      intronic chr2:55608675(-) A-I      intronic chr2:55611853(-) A-I      intronic chr2:55611871(-) A-I      intronic chr2:55613803(-) A-I      intronic chr2:55614861(-) A-I      intronic chr2:55614866(-) A-I      intronic chr2:55614872(-) A-I      intronic chr2:55614896(-) A-I      intronic chr2:55621192(-) A-I      intronic chr2:55621229(-) A-I      intronic chr2:55622072(-) A-I      intronic chr2:55622093(-) A-I      intronic chr2:55622185(-) A-I      intronic chr2:55622271(-) A-I      intronic chr2:55623825(-) A-I      intronic chr2:55623848(-) A-I      intronic chr2:55623884(-) A-I      intronic chr2:55623890(-) A-I      intronic chr2:55623924(-) A-I      intronic chr2:55624395(-) A-I      intronic chr2:55624399(-) A-I      intronic chr2:55624404(-) A-I      intronic chr2:55624409(-) A-I      intronic chr2:55624424(-) A-I      intronic chr2:55624425(-) A-I      intronic chr2:55628363(-) A-I      intronic chr2:55628458(-) A-I      intronic chr2:55628488(-) A-I      intronic chr2:55629956(-) A-I      intronic chr2:55630023(-) A-I      intronic chr2:55630032(-) A-I      intronic chr2:55630036(-) A-I      intronic chr2:55630082(-) A-I      intronic chr2:55633795(-) A-I      intronic chr2:55634183(-) A-I      intronic chr2:55634228(-) A-I      intronic chr2:55634524(-) A-I      intronic chr2:55634536(-) A-I      intronic chr2:55634658(-) A-I      intronic chr2:55635033(-) A-I      intronic chr2:55635062(-) A-I      intronic chr2:55635091(-) A-I      intronic chr2:55635126(-) A-I      intronic chr2:55637005(-) A-I      intronic chr2:55637081(-) A-I      intronic chr2:55637777(-) A-I      intronic chr2:55637802(-) A-I      intronic chr2:55637817(-) A-I      intronic chr2:55524127(-) A-I      intronic chr2:55524151(-) A-I      intronic chr2:55524162(-) A-I      intronic chr2:55524171(-) A-I      intronic chr2:55524173(-) A-I      intronic chr2:55524238(-) A-I      intronic chr2:55524649(-) A-I      intronic chr2:55524814(-) A-I      intronic chr2:55524820(-) A-I      intronic chr2:55527753(-) A-I      intronic chr2:55527815(-) A-I      intronic chr2:55527820(-) A-I      intronic chr2:55527825(-) A-I      intronic chr2:55527848(-) A-I      intronic chr2:55527874(-) A-I      intronic chr2:55531297(-) A-I      intronic chr2:55531312(-) A-I      intronic chr2:55531374(-) A-I      intronic chr2:55533906(-) A-I      intronic chr2:55534548(-) A-I      intronic chr2:55534871(-) A-I      intronic chr2:55534886(-) A-I      intronic chr2:55555928(-) A-I      intronic chr2:55555934(-) A-I      intronic chr2:55555972(-) A-I      intronic chr2:55555995(-) A-I      intronic chr2:55556053(-) A-I      intronic chr2:55556055(-) A-I      intronic chr2:55556071(-) A-I      intronic chr2:55556968(-) A-I      intronic chr2:55557124(-) A-I      intronic chr2:55557481(-) A-I      intronic chr2:55557552(-) A-I      intronic chr2:55559307(-) A-I      intronic chr2:55564848(-) A-I      intronic chr2:55564864(-) A-I      intronic chr2:55556039(-) A-I      intronic chr2:55606132(-) A-I      intronic chr2:55556993(-) A-I      intronic chr2:55527840(-) A-I      intronic chr2:55524612(-) A-I      intronic chr2:55524153(-) A-I      intronic chr2:55624331(-) A-I      intronic chr2:55579466(-) A-I      intronic chr2:55519831(-) A-I      intronic chr2:55626581(-) A-I      intronic chr2:55606171(-) A-I      intronic chr2:55578579(-) A-I      intronic chr2:55557497(-) A-I      intronic chr2:55611866(-) A-I      intronic chr2:55559352(-) A-I      intronic chr2:55624323(-) A-I      intronic chr2:55596790(-) A-I      intronic chr2:55579442(-) A-I      intronic chr2:55531279(-) A-I      intronic chr2:55526148(-) A-I      intronic chr2:55633727(-) A-I      intronic chr2:55624369(-) A-I      intronic chr2:55624346(-) A-I      intronic chr2:55614191(-) A-I      intronic chr2:55634951(-) A-I      intronic chr2:55524198(-) A-I      intronic chr2:55557033(-) A-I      intronic chr2:55612079(-) A-I      intronic chr2:55524188(-) A-I      intronic chr2:55634578(-) A-I      intronic chr2:55612044(-) A-I      intronic chr2:55620555(-) A-I      intronic chr2:55613710(-) A-I      intronic chr2:55524774(-) A-I      intronic chr2:55633773(-) A-I      intronic chr2:55535303(-) A-I      intronic chr2:55614738(-) A-I      intronic chr2:55532791(-) A-I      intronic chr2:55525861(-) A-I      intronic chr2:55574918(-) A-I      intronic chr2:55611902(-) A-I      intronic chr2:55527879(-) A-I      intronic chr2:55612030(-) A-I      intronic chr2:55606075(-) A-I      intronic chr2:55611925(-) A-I      intronic chr2:55559366(-) A-I      intronic chr2:55613311(-) A-I      intronic chr2:55543789(-) A-I      intronic chr2:55543865(-) A-I      intronic chr2:55621222(-) A-I      intronic chr2:55637803(-) A-I      intronic chr2:55622004(-) A-I      intronic chr2:55614835(-) A-I      intronic chr2:55624262(-) A-I      intronic chr2:55608484(-) A-I      intronic chr2:55638804(-) A-I      intronic chr2:55531428(-) A-I      intronic chr2:55640297(-) A-I      intronic chr2:55519834(-) A-I      intronic chr2:55543702(-) A-I      intronic chr2:55607005(-) A-I      intronic chr2:55524064(-) A-I      intronic chr2:55637852(-) A-I      intronic chr2:55613670(-) A-I      intronic chr2:55613746(-) A-I      intronic chr2:55531412(-) A-I      intronic chr2:55606829(-) A-I      intronic chr2:55614060(-) A-I      intronic chr2:55530650(-) A-I      intronic chr2:55543857(-) A-I      intronic chr2:55607863(-) A-I      intronic chr2:55524826(-) A-I      intronic chr2:55524748(-) A-I      intronic chr2:55557042(-) A-I      intronic chr2:55598026(-) A-I      intronic chr2:55535209(-) A-I      intronic chr2:55634641(-) A-I      intronic chr2:55624474(-) A-I      intronic chr2:55524115(-) A-I      intronic chr2:55543808(-) A-I      intronic chr2:55613729(-) A-I      intronic chr2:55623842(-) A-I      intronic chr2:55636973(-) A-I      intronic chr2:55602333(-) A-I      intronic chr2:55524703(-) A-I      intronic chr2:55606020(-) A-I      intronic chr2:55634316(-) A-I      intronic chr2:55532883(-) A-I      intronic chr2:55635133(-) A-I      intronic chr2:55637014(-) A-I      intronic chr2:55637764(-) A-I      intronic chr2:55532726(-) A-I      intronic chr2:55612017(-) A-I      intronic chr2:55581976(-) A-I      intronic chr2:55566303(-) A-I      intronic chr2:55534723(-) A-I      intronic chr2:55610637(-) A-I      intronic chr2:55621184(-) A-I      intronic chr2:55532951(-) A-I      intronic chr2:55531289(-) A-I      intronic chr2:55524134(-) A-I      intronic chr2:55607854(-) A-I      intronic chr2:55574845(-) A-I      intronic chr2:55635127(-) A-I      intronic chr2:55533148(-) A-I      intronic chr2:55607860(-) A-I      intronic chr2:55620629(-) A-I      intronic chr2:55635023(-) A-I      intronic chr2:55543743(-) A-I      intronic chr2:55640972(-) A-I      intronic chr2:55620524(-) A-I      intronic chr2:55557020(-) A-I      intronic chr2:55559383(-) A-I      intronic chr2:55596770(-) A-I      intronic chr2:55559490(-) A-I      intronic chr2:55634086(-) A-I      intronic chr2:55532833(-) A-I      intronic chr2:55535344(-) A-I      intronic chr2:55637070(-) A-I      intronic chr2:55635018(-) A-I      intronic chr2:55557565(-) A-I      intronic chr2:55597521(-) A-I      intronic chr2:55633843(-) A-I      intronic chr2:55597665(-) A-I      intronic chr2:55524283(-) A-I      intronic chr2:55596448(-) A-I      intronic chr2:55557143(-) A-I      intronic chr2:55527712(-) A-I      intronic chr2:55526288(-) A-I      intronic chr2:55579378(-) A-I      intronic chr2:55524569(-) A-I      intronic chr2:55634678(-) A-I      intronic chr2:55530682(-) A-I      intronic chr2:55613237(-) A-I      intronic chr2:55634619(-) A-I      intronic chr2:55557427(-) A-I      intronic chr2:55533324(-) A-I      intronic chr2:55524208(-) A-I      intronic chr2:55581444(-) A-I      intronic chr2:55525835(-) A-I      intronic chr2:55524842(-) A-I      intronic chr2:55534899(-) A-I      intronic chr2:55593603(-) A-I      intronic chr2:55607997(-) A-I      intronic chr2:55555969(-) A-I      intronic chr2:55602269(-) A-I      intronic chr2:55634659(-) A-I      intronic chr2:55606884(-) A-I      intronic chr2:55634950(-) A-I      intronic chr2:55557501(-) A-I      intronic chr2:55613801(-) A-I      intronic chr2:55596464(-) A-I      intronic chr2:55534844(-) A-I      intronic chr2:55557377(-) A-I      intronic chr2:55524742(-) A-I      intronic chr2:55524684(-) A-I      intronic chr2:55607896(-) A-I      intronic chr2:55557129(-) A-I      intronic chr2:55624368(-) A-I      intronic chr2:55614806(-) A-I      intronic chr2:55637913(-) A-I      intronic chr2:55532818(-) A-I      intronic chr2:55533968(-) A-I      intronic chr2:55613276(-) A-I      intronic chr2:55637041(-) A-I      intronic chr2:55527919(-) A-I      intronic chr2:55597940(-) A-I      intronic chr2:55557040(-) A-I      intronic chr2:55614661(-) A-I      intronic chr2:55578345(-) A-I      intronic chr2:55614673(-) A-I      intronic chr2:55524711(-) A-I      intronic chr2:55532879(-) A-I      intronic chr2:55634593(-) A-I      intronic chr2:55638794(-) A-I      intronic chr2:55543648(-) A-I      intronic chr2:55620499(-) A-I      intronic chr2:55637853(-) A-I      intronic chr2:55543634(-) A-I      intronic chr2:55634523(-) A-I      intronic chr2:55578538(-) A-I      intronic chr2:55634893(-) A-I      intronic chr2:55637141(-) A-I      intronic chr2:55578755(-) A-I      intronic chr2:55612066(-) A-I      intronic chr2:55622017(-) A-I      intronic chr2:55531188(-) A-I      intronic chr2:55633296(-) A-I      intronic chr2:55557408(-) A-I      intronic chr2:55624434(-) A-I      intronic chr2:55525949(-) A-I      intronic chr2:55614763(-) A-I      intronic chr2:55531318(-) A-I      intronic chr2:55598873(-) A-I      intronic chr2:55568758(-) A-I      intronic chr2:55527785(-) A-I      intronic chr2:55524303(-) A-I      intronic chr2:55624342(-) A-I      intronic chr2:55534762(-) A-I      intronic chr2:55614683(-) A-I      intronic chr2:55602802(-) A-I      intronic chr2:55606133(-) A-I      intronic chr2:55635149(-) A-I      intronic chr2:55634733(-) A-I      intronic chr2:55637995(-) A-I      intronic chr2:55620492(-) A-I      intronic chr2:55559393(-) A-I      intronic chr2:55524233(-) A-I      intronic chr2:55634584(-) A-I      intronic chr2:55525865(-) A-I      intronic chr2:55543970(-) A-I      intronic chr2:55612010(-) A-I      intronic chr2:55532882(-) A-I      intronic chr2:55634681(-) A-I      intronic chr2:55621147(-) A-I      intronic chr2:55535062(-) A-I      intronic chr2:55532812(-) A-I      intronic chr2:55524789(-) A-I      intronic chr2:55556981(-) A-I      intronic chr2:55641031(-) A-I      intronic chr2:55596726(-) A-I      intronic chr2:55597581(-) A-I      intronic chr2:55532780(-) A-I      intronic chr2:55559379(-) A-I      intronic chr2:55613772(-) A-I      intronic chr2:55598917(-) A-I      intronic chr2:55637156(-) A-I      intronic chr2:55557546(-) A-I      intronic chr2:55532797(-) A-I      intronic chr2:55557563(-) A-I      intronic chr2:55633685(-) A-I      intronic chr2:55564797(-) A-I      intronic chr2:55524741(-) A-I      intronic chr2:55587969(-) A-I      intronic chr2:55641026(-) A-I      intronic chr2:55532914(-) A-I      intronic chr2:55634921(-) A-I      intronic chr2:55559419(-) A-I      intronic chr2:55527714(-) A-I      intronic chr2:55559320(-) A-I      intronic chr2:55635022(-) A-I      intronic chr2:55634991(-) A-I      intronic chr2:55575373(-) A-I      intronic chr2:55557389(-) A-I      intronic chr2:55535343(-) A-I      intronic chr2:55524717(-) A-I      intronic chr2:55524149(-) A-I      intronic chr2:55613802(-) A-I      intronic chr2:55613277(-) A-I      intronic chr2:55524614(-) A-I      intronic chr2:55634506(-) A-I      intronic chr2:55524076(-) A-I      intronic chr2:55640298(-) A-I      intronic chr2:55626627(-) A-I      intronic chr2:55524290(-) A-I      intronic chr2:55524767(-) A-I      intronic chr2:55633687(-) A-I      intronic chr2:55625915(-) A-I      intronic chr2:55524237(-) A-I      intronic chr2:55613705(-) A-I      intronic chr2:55579324(-) A-I      intronic chr2:55559401(-) A-I      intronic chr2:55610647(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC88A	chr2:55524153(-) A-I intron -    22327324 chr2:55524198(-) A-I intron -    22327324 chr2:55524290(-) A-I intron -    22327324 chr2:55524759(-) A-I intron -    22327324 chr2:55524767(-) A-I intron -    22327324 chr2:55524826(-) A-I intron -    22327324 chr2:55531318(-) A-I intron -    22327324 chr2:55533324(-) A-I intron -    22327324 chr2:55584468(-) A-G intron -    22484847 chr2:55584472(-) G-A intron -    22484847 chr2:55524064(-) A-G intron -    22484847 chr2:55524077(-) A-G intron -    22484847 chr2:55524134(-) A-G intron -    22484847 chr2:55524153(-) A-G intron -    22484847 chr2:55524198(-) A-G intron -    22484847 chr2:55524208(-) A-G intron -    22484847 chr2:55524220(-) A-G intron -    22484847 chr2:55524237(-) A-G intron -    22484847 chr2:55524290(-) A-G intron -    22484847 chr2:55524594(-) A-G intron -    22484847 chr2:55524612(-) A-G intron -    22484847 chr2:55524614(-) A-G intron -    22484847 chr2:55524675(-) A-G intron -    22484847 chr2:55524684(-) A-G intron -    22484847 chr2:55524685(-) A-G intron -    22484847 chr2:55524717(-) A-G intron -    22484847 chr2:55524741(-) A-G intron -    22484847 chr2:55524742(-) A-G intron -    22484847 chr2:55524748(-) A-G intron -    22484847 chr2:55524750(-) A-G intron -    22484847 chr2:55524767(-) A-G intron -    22484847 chr2:55524774(-) A-G intron -    22484847 chr2:55524789(-) A-G intron -    22484847 chr2:55524805(-) T-G intron -    22484847 chr2:55524826(-) A-G intron -    22484847 chr2:55524842(-) A-G intron -    22484847 chr2:55525865(-) A-G intron -    22484847 chr2:55525935(-) A-G intron -    22484847 chr2:55526148(-) A-G intron -    22484847 chr2:55526288(-) A-G intron -    22484847 chr2:55527712(-) A-G intron -    22484847 chr2:55530655(-) A-G intron -    22484847 chr2:55530682(-) A-G intron -    22484847 chr2:55530769(-) T-C intron -    22484847 chr2:55531318(-) A-G intron -    22484847 chr2:55531412(-) A-G intron -    22484847 chr2:55531428(-) A-G intron -    22484847 chr2:55532797(-) A-G intron -    22484847 chr2:55532883(-) A-G intron -    22484847 chr2:55532914(-) A-G intron -    22484847 chr2:55532945(-) A-G intron -    22484847 chr2:55533323(-) A-G intron -    22484847 chr2:55533324(-) A-G intron -    22484847 chr2:55533330(-) A-G intron -    22484847 chr2:55533931(-) A-G intron -    22484847 chr2:55543743(-) A-G intron -    22484847 chr2:55543789(-) A-G intron -    22484847 chr2:55543808(-) A-G intron -    22484847 chr2:55543809(-) A-G intron -    22484847 chr2:55543830(-) A-G intron -    22484847 chr2:55543857(-) A-G intron -    22484847 chr2:55548433(-) T-C intron -    22484847 chr2:55551038(-) T-C intron -    22484847 chr2:55556981(-) A-G intron -    22484847 chr2:55557040(-) A-G intron -    22484847 chr2:55557052(-) G-A intron -    22484847 chr2:55557129(-) A-G intron -    22484847 chr2:55557143(-) A-G intron -    22484847 chr2:55557389(-) A-G intron -    22484847 chr2:55557487(-) A-G intron -    22484847 chr2:55557497(-) A-G intron -    22484847 chr2:55557546(-) A-G intron -    22484847 chr2:55557547(-) A-G intron -    22484847 chr2:55557562(-) A-G intron -    22484847 chr2:55557565(-) A-G intron -    22484847 chr2:55559379(-) A-G intron -    22484847 chr2:55559383(-) A-G intron -    22484847 chr2:55559490(-) A-G intron -    22484847 chr2:55564797(-) A-G intron -    22484847 chr2:55566155(-) A-G intron -    22484847 chr2:55579334(-) A-G intron -    22484847 chr2:55579378(-) A-G intron -    22484847 chr2:55579442(-) A-G intron -    22484847 chr2:55579466(-) A-G intron -    22484847 chr2:55581444(-) A-G intron -    22484847 chr2:55593603(-) A-G intron -    22484847 chr2:55595713(-) T-C intron -    22484847 chr2:55596770(-) A-G intron -    22484847 chr2:55597887(-) A-G intron -    22484847 chr2:55602269(-) A-G intron -    22484847 chr2:55602276(-) A-G intron -    22484847 chr2:55602930(-) A-G intron -    22484847 chr2:55606171(-) A-G intron -    22484847 chr2:55607005(-) A-G intron -    22484847 chr2:55607036(-) A-G intron -    22484847 chr2:55607880(-) A-G intron -    22484847 chr2:55607922(-) A-G intron -    22484847 chr2:55607971(-) A-G intron -    22484847 chr2:55607997(-) A-G intron -    22484847 chr2:55611273(-) A-G intron -    22484847 chr2:55611930(-) A-G intron -    22484847 chr2:55612010(-) A-G intron -    22484847 chr2:55613237(-) A-G intron -    22484847 chr2:55614191(-) A-G intron -    22484847 chr2:55614201(-) A-G intron -    22484847 chr2:55614683(-) A-G intron -    22484847 chr2:55614715(-) A-G intron -    22484847 chr2:55614738(-) A-G intron -    22484847 chr2:55614763(-) A-G intron -    22484847 chr2:55623842(-) A-G intron -    22484847 chr2:55624323(-) A-G intron -    22484847 chr2:55624342(-) A-G intron -    22484847 chr2:55624346(-) A-G intron -    22484847 chr2:55624368(-) A-G intron -    22484847 chr2:55624369(-) A-G intron -    22484847 chr2:55624408(-) A-G intron -    22484847 chr2:55624474(-) A-G intron -    22484847 chr2:55626525(-) G-A intron -    22484847 chr2:55626662(-) G-T intron -    22484847 chr2:55629987(-) A-G intron -    22484847 chr2:55631951(-) A-G intron -    22484847 chr2:55631963(-) A-G intron -    22484847 chr2:55632032(-) A-G intron -    22484847 chr2:55632037(-) A-G intron -    22484847 chr2:55632132(-) A-G intron -    22484847 chr2:55632154(-) A-G intron -    22484847 chr2:55633061(-) A-G intron -    22484847 chr2:55633102(-) A-G intron -    22484847 chr2:55633106(-) A-G intron -    22484847 chr2:55633137(-) A-G intron -    22484847 chr2:55633146(-) A-G intron -    22484847 chr2:55633225(-) A-G intron -    22484847 chr2:55633296(-) A-G intron -    22484847 chr2:55633687(-) A-G intron -    22484847 chr2:55633724(-) A-G intron -    22484847 chr2:55633727(-) A-G intron -    22484847 chr2:55633773(-) A-G intron -    22484847 chr2:55634506(-) A-G intron -    22484847 chr2:55634522(-) A-G intron -    22484847 chr2:55634523(-) A-G intron -    22484847 chr2:55634578(-) A-G intron -    22484847 chr2:55634584(-) A-G intron -    22484847 chr2:55634593(-) A-G intron -    22484847 chr2:55634619(-) A-G intron -    22484847 chr2:55634629(-) A-G intron -    22484847 chr2:55634641(-) A-G intron -    22484847 chr2:55634659(-) A-G intron -    22484847 chr2:55634681(-) A-G intron -    22484847 chr2:55635018(-) A-G intron -    22484847 chr2:55635127(-) A-G intron -    22484847 chr2:55635133(-) A-G intron -    22484847 chr2:55637141(-) A-G intron -    22484847 chr2:55637156(-) A-G intron -    22484847 chr2:55637852(-) A-G intron -    22484847 chr2:55637853(-) A-G intron -    22484847 chr2:55637913(-) A-G intron -    22484847 chr2:55637945(-) A-G intron -    22484847 chr2:55637966(-) A-G intron -    22484847 chr2:55637995(-) A-G intron -    22484847 chr2:55640922(-) A-G intron -    22484847 chr2:55641031(-) A-G intron -    22484847 chr2:55641100(-) T-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC88A	chr2:55515000-55515001(-) m6A 3'UTR       27773535 chr2:55515021-55515022(-) m6A 3'UTR       27773535 chr2:55515040-55515041(-) m6A 3'UTR       27773535 chr2:55515079-55515080(-) m6A 3'UTR       27773535 chr2:55515388-55515389(-) m6A 3'UTR       24981863 chr2:55515986-55515987(-) m6A 3'UTR//intron       24981863//27773535 chr2:55516000-55516001(-) m6A 3'UTR//intron       24981863//27773535 chr2:55516030-55516031(-) m6A 3'UTR//intron       24981863//27773535 chr2:55516083-55516084(-) m6A 3'UTR//intron       27773535 chr2:55516153-55516154(-) m6A 3'UTR//intron       27773535 chr2:55516163-55516164(-) m6A 3'UTR//intron       27773535 chr2:55516175-55516176(-) m6A 3'UTR//intron       27773535 chr2:55516187-55516188(-) m6A 3'UTR//intron       27773535 chr2:55516233-55516234(-) m6A 3'UTR//intron       27773535 chr2:55516280-55516281(-) m6A 3'UTR//intron       24981863 chr2:55516303-55516304(-) m6A 3'UTR//intron       24981863 chr2:55516385-55516386(-) m6A 3'UTR//intron       24981863 chr2:55516397-55516398(-) m6A 3'UTR//intron       24981863 chr2:55517989-55517990(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085 chr2:55518032-55518033(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr2:55518090-55518091(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr2:55518156-55518157(-) m6A 3'UTR//intron       24284625//24981863//26404942//27773535//22608085 chr2:55518199-55518200(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr2:55518243-55518244(-) m6A 3'UTR//intron       24284625//27773535//22608085 chr2:55518904-55518905(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:55521322-55521323(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr2:55521479-55521480(-) m6A 3'UTR//intron       27773535 chr2:55521519-55521520(-) m6A 3'UTR//intron       27773535 chr2:55521540-55521541(-) m6A 3'UTR//intron       27773535 chr2:55521577-55521578(-) m6A 3'UTR//intron       27773535 chr2:55521856-55521857(-) m6A 3'UTR//intron       27773535 chr2:55521883-55521884(-) m6A 3'UTR//intron       27773535 chr2:55522013-55522014(-) m6A 3'UTR//intron       27773535 chr2:55522193-55522194(-) m6A 3'UTR//intron       27773535 chr2:55522228-55522229(-) m6A CDS//intron       27773535 chr2:55522341-55522342(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr2:55522361-55522362(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr2:55522382-55522383(-) m6A CDS//intron       24284625//24981863//27773535//22608085 chr2:55522511-55522512(-) m6A CDS//intron       24284625//24981863//27773535 chr2:55522573-55522574(-) m6A CDS//intron       24284625//24981863//27773535 chr2:55522578-55522579(-) m6A CDS//intron       24284625//24981863//27773535 chr2:55522600-55522601(-) m6A CDS//intron       24284625//24981863//27773535 chr2:55522608-55522609(-) m6A CDS//intron       24284625//24981863//27773535 chr2:55522641-55522642(-) m6A CDS//intron       24284625//27773535//22608085 chr2:55522793-55522794(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr2:55522800-55522801(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr2:55522828-55522829(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr2:55522840-55522841(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55522967-55522968(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523002-55523003(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523018-55523019(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523041-55523042(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523058-55523059(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523068-55523069(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523112-55523113(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:55523467-55523468(-) m6A CDS       22608085 chr2:55523497-55523498(-) m6A CDS       22608085 chr2:55536054-55536055(-) m6A CDS       24981863//27773535 chr2:55536353-55536354(-) m6A CDS       24981863//27773535 chr2:55539577-55539578(-) m6A CDS//exon       24981863//27773535 chr2:55539583-55539584(-) m6A CDS//exon       24981863//27773535 chr2:55539630-55539631(-) m6A CDS//exon       27773535 chr2:55539635-55539636(-) m6A CDS//exon       27773535 chr2:55539651-55539652(-) m6A CDS//exon       27773535 chr2:55540992-55540993(-) m6A exon//intron       27773535 chr2:55543114-55543115(-) m6A CDS//exon       27773535 chr2:55543123-55543124(-) m6A CDS//exon       27773535 chr2:55543153-55543154(-) m6A CDS//exon       24981863//27773535 chr2:55543159-55543160(-) m6A CDS//exon       24981863//27773535 chr2:55543200-55543201(-) m6A CDS//exon       24981863//27773535 chr2:55543215-55543216(-) m6A CDS//exon       24981863//27773535 chr2:55544361-55544362(-) m6A CDS//intron       24981863//27773535 chr2:55544384-55544385(-) m6A CDS//intron       24981863//27773535 chr2:55544421-55544422(-) m6A CDS//intron       24981863//27773535 chr2:55544457-55544458(-) m6A CDS//intron       24981863//27773535 chr2:55544466-55544467(-) m6A CDS//intron       24981863//27773535 chr2:55544702-55544703(-) m6A CDS//exon       24981863//27773535 chr2:55544711-55544712(-) m6A CDS//exon       24981863//27773535 chr2:55544719-55544720(-) m6A CDS//exon       24981863//27773535 chr2:55544754-55544755(-) m6A CDS//exon       27773535 chr2:55544761-55544762(-) m6A CDS//exon       27773535 chr2:55544809-55544810(-) m6A CDS//exon       24981863 chr2:55544858-55544859(-) m6A CDS//exon       24981863 chr2:55544933-55544934(-) m6A CDS       24981863//27773535 chr2:55545998-55545999(-) m6A CDS       24981863//27773535 chr2:55546017-55546018(-) m6A CDS       24981863//27773535 chr2:55546034-55546035(-) m6A CDS       24981863//27773535 chr2:55546075-55546076(-) m6A CDS       27773535 chr2:55546082-55546083(-) m6A CDS       27773535 chr2:55546103-55546104(-) m6A CDS       27773535 chr2:55549688-55549689(-) m6A CDS//intron       24981863//27773535 chr2:55549705-55549706(-) m6A CDS//intron       24981863//27773535 chr2:55549745-55549746(-) m6A CDS//intron       24981863//27773535 chr2:55549795-55549796(-) m6A CDS//intron       24981863//27773535 chr2:55549801-55549802(-) m6A CDS//intron       24981863//27773535 chr2:55555431-55555432(-) m6A CDS       24981863//27773535 chr2:55555438-55555439(-) m6A CDS       24981863//27773535 chr2:55555561-55555562(-) m6A CDS       24981863//27773535 chr2:55559613-55559614(-) m6A exon//intron       27773535 chr2:55559676-55559677(-) m6A exon//intron       27773535 chr2:55559718-55559719(-) m6A CDS//exon       27773535//22608085 chr2:55559791-55559792(-) m6A CDS//exon       24981863//27773535//22608085 chr2:55559804-55559805(-) m6A CDS//exon       24981863//27773535//22608085 chr2:55561301-55561302(-) m6A CDS//exon       24981863//27773535//22608085 chr2:55561354-55561355(-) m6A CDS//exon       24981863//27773535//22608085 chr2:55561359-55561360(-) m6A CDS//exon       24981863//27773535//22608085 chr2:55561436-55561437(-) m6A 3'UTR//CDS//exon       24284625//24981863//28052920//27773535//22575960//22608085 chr2:55561460-55561461(-) m6A 3'UTR//CDS//exon       24284625//24981863//28052920//27773535//22575960//22608085 chr2:55561486-55561487(-) m6A 3'UTR//CDS       24284625//24981863//28052920//27773535//22575960//22608085 chr2:55561523-55561524(-) m6A CDS       24284625//24981863//28052920//27773535//22575960//22608085 chr2:55561529-55561530(-) m6A CDS       24284625//24981863//28052920//27773535//22575960//22608085 chr2:55561550-55561551(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22575960//22608085 chr2:55561560-55561561(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22575960//22608085 chr2:55561573-55561574(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22575960//22608085 chr2:55561593-55561594(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085 chr2:55561601-55561602(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085 chr2:55561635-55561636(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085 chr2:55561645-55561646(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//22608085 chr2:55561655-55561656(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr2:55561705-55561706(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr2:55561769-55561770(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr2:55561776-55561777(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr2:55561841-55561842(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:55561848-55561849(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:55561924-55561925(-) m6A CDS       24981863//27773535//22608085 chr2:55561970-55561971(-) m6A CDS       24981863//27773535//22608085 chr2:55562069-55562070(-) m6A CDS       24981863//27773535//22608085 chr2:55562102-55562103(-) m6A CDS       24981863//27773535//22608085 chr2:55562123-55562124(-) m6A CDS       24981863//27773535//22608085 chr2:55562161-55562162(-) m6A CDS       24981863//27773535//22608085 chr2:55562190-55562191(-) m6A CDS       24981863//27773535//22608085 chr2:55562205-55562206(-) m6A CDS       24981863//27773535//22608085 chr2:55562260-55562261(-) m6A CDS       24981863//27773535//22608085 chr2:55562273-55562274(-) m6A CDS       24981863//27773535//22608085 chr2:55562285-55562286(-) m6A CDS       24981863//27773535 chr2:55563819-55563820(-) m6A CDS       24981863//27773535 chr2:55563842-55563843(-) m6A CDS       24981863//27773535 chr2:55563851-55563852(-) m6A CDS       24981863//27773535 chr2:55566676-55566677(-) m6A CDS       27773535 chr2:55566694-55566695(-) m6A CDS       27773535 chr2:55570793-55570794(-) m6A CDS       24981863//27773535 chr2:55570801-55570802(-) m6A CDS       24981863//27773535 chr2:55570814-55570815(-) m6A CDS       24981863//27773535 chr2:55570820-55570821(-) m6A CDS       24981863//27773535 chr2:55570856-55570857(-) m6A CDS       24981863//27773535//22575960 chr2:55571521-55571522(-) m6A CDS       24981863//27773535 chr2:55571540-55571541(-) m6A CDS       24981863//27773535 chr2:55571583-55571584(-) m6A CDS       24981863//27773535 chr2:55571597-55571598(-) m6A CDS       24981863//27773535 chr2:55571610-55571611(-) m6A CDS       24981863//27773535 chr2:55571616-55571617(-) m6A CDS       24981863//27773535 chr2:55571636-55571637(-) m6A CDS       24981863//27773535 chr2:55573346-55573347(-) m6A CDS       27773535 chr2:55646309-55646310(-) m6A 5'UTR//exon       24981863 chr2:55646454-55646455(-) m6A 5'UTR//exon       - chr2:55646519-55646520(-) Y 5'UTR//exon       26075521 chr2:55646548-55646549(-) m6A 5'UTR//exon       - chr2:55646872-55646873(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-1299	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Extracellular Vesicle Plasma     28588009 Microvesicle Seminal plasma     23539611 Microvesicle Fibroblasts|Mesenchymal stem cells     -
	CCDC88A	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-1299	Gemcitabine 60750 Drug interaction    RC00007746 Eloxatine 5310940 Drug interaction    RC00007748 Doxorubicin 31703 Drug interaction    RC00007745 cis-Diaminedichloroplatinum 2767 Drug interaction    RC00007744

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	hsa-miR-1299	Topotecan       60700 l-685,458       5479543 5-Chloro-N4-(2-(isopropylsulfonyl)phenyl)-N2-(2-methoxy-4-(4-(4-methylpiperazin-1-yl)piperidin-1-yl)phenyl)pyrimidine-2,4-diamine       16038120 Dovitinib       135398510 Crizotinib       11626560

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1299
Interactor2: CCDC88A

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.