Detail Information

Basic Information:


  VIRBase ID:  

HHID00069669

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1294:           ZNF92:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1294 ZNF92
miRBase
Accession/Entrez ID		 MIMAT0005884 168374
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HEL-203//HPF12//HTF12//TF12

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1294
rs1162939290 chr5:154347163    G/T
rs1179835339 chr5:154347171    G/GTATA
rs1237976003 chr5:154347166    T/C
rs1255234532 chr5:154347174    T/A
rs1465013068 chr5:154347169    T/C
rs189565536 chr5:154347168    G/T
rs1211754242 chr5:154347158    G/A
rs1341512450 chr5:154347155    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF92
chr7:64857550(+) A-I      intronic
chr7:64857549(+) A-I      intronic
chr7:64857544(+) A-I      intronic
chr7:64843104(+) A-I      intronic
chr7:64843091(+) A-I      intronic
chr7:64843028(+) A-I      intronic
chr7:64857567(+) A-I      intronic
chr7:64857820(+) A-I      intronic
chr7:64860019(+) A-I      intronic
chr7:64857591(+) A-I      intronic
chr7:64841460(+) A-I      intronic
chr7:64841094(+) A-I      intronic
chr7:64840596(+) A-I      intronic
chr7:64841009(+) A-I      intronic
chr7:64840926(+) A-I      intronic
chr7:64840657(+) A-I      intronic
chr7:64840632(+) A-I      intronic
chr7:64840610(+) A-I      intronic
chr7:64840585(+) A-I      intronic
chr7:64840584(+) A-I      intronic
chr7:64860957(+) A-I      intronic
chr7:64843090(+) A-I      intronic
chr7:64841464(+) A-I      intronic
chr7:64840983(+) A-I      intronic
chr7:64840681(+) A-I      intronic
chr7:64840925(+) A-I      intronic
chr7:64843534(+) A-I      intronic
chr7:64851228(+) A-I      intronic
chr7:64840663(+) A-I      intronic
chr7:64841429(+) A-I      intronic
chr7:64840955(+) A-I      intronic
chr7:64857529(+) A-I      intronic
chr7:64843123(+) A-I      intronic
chr7:64840641(+) A-I      intronic
chr7:64857589(+) A-I      intronic
chr7:64861688(+) A-I      intronic
chr7:64853444(+) A-I      intronic
chr7:64851130(+) A-I      intronic
chr7:64840640(+) A-I      intronic
chr7:64857404(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF92
chr7:64840618(+) A-G intron -    22484847
chr7:64840622(+) A-G intron -    22484847
chr7:64840641(+) A-G intron -    22484847
chr7:64840646(+) A-G intron -    22484847
chr7:64840681(+) A-G intron -    22484847
chr7:64840943(+) A-G intron -    22484847
chr7:64840965(+) A-G intron -    22484847
chr7:64840983(+) A-G intron -    22484847
chr7:64840991(+) A-G intron -    22484847
chr7:64841429(+) A-G intron -    22484847
chr7:64841489(+) A-G intron -    22484847
chr7:64842580(+) A-G intron -    22484847
chr7:64843046(+) A-G intron -    22484847
chr7:64843090(+) A-G intron -    22484847
chr7:64845275(+) G-C intron -    22484847
chr7:64853444(+) A-G intron -    22484847
chr7:64857589(+) A-G intron -    22484847
chr7:64857886(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF92
chr7:64853739-64853740(+) m6A 5'UTR//CDS//intron       24981863
chr7:64853788-64853789(+) m6A 5'UTR//CDS//intron       24209618//24981863//27773535//22608085
chr7:64853802-64853803(+) m6A CDS//intron       24209618//24981863//27773535//22608085
chr7:64853807-64853808(+) m6A CDS//intron       24209618//24981863//27773535//22608085
chr7:64863330-64863331(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64863347-64863348(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64863373-64863374(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64863422-64863423(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64863524-64863525(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64863539-64863540(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64863556-64863557(+) m6A CDS       24981863//27773535//22608085
chr7:64863680-64863681(+) m6A CDS       24981863//27773535//22608085
chr7:64863707-64863708(+) m6A CDS       24981863//27773535//22608085
chr7:64863764-64863765(+) m6A CDS       24981863//27773535//22608085
chr7:64863791-64863792(+) m6A CDS       24981863//27773535//22608085
chr7:64863848-64863849(+) m6A CDS       24981863//27773535//22608085
chr7:64863875-64863876(+) m6A CDS       24981863//27773535//22608085
chr7:64863932-64863933(+) m6A CDS       24981863//27773535//22608085
chr7:64863959-64863960(+) m6A CDS       24981863//27773535//22608085
chr7:64864016-64864017(+) m6A CDS       24981863//27773535//22608085
chr7:64864043-64864044(+) m6A CDS       24981863//27773535//22608085
chr7:64864090-64864091(+) m6A CDS       24981863//27773535//22608085
chr7:64864100-64864101(+) m6A CDS       24981863//27773535//22608085
chr7:64864127-64864128(+) m6A CDS       24981863//27773535//22608085
chr7:64864184-64864185(+) m6A CDS       24981863//27773535//22608085
chr7:64864211-64864212(+) m6A CDS       24981863//27773535//22608085
chr7:64864247-64864248(+) m6A CDS       24981863//27773535//22608085
chr7:64864268-64864269(+) m6A CDS       24981863//27773535//22608085
chr7:64864295-64864296(+) m6A CDS       24981863//27773535//22608085
chr7:64864352-64864353(+) m6A CDS       24981863//22608085
chr7:64864379-64864380(+) m6A CDS       24981863//22608085
chr7:64864419-64864420(+) Y CDS       26075521
chr7:64864436-64864437(+) m6A CDS       24981863//22608085
chr7:64864463-64864464(+) m6A CDS       24981863//22608085
chr7:64864520-64864521(+) m6A CDS       24981863//22608085
chr7:64864594-64864595(+) m6A CDS       24981863//27773535//22608085
chr7:64864631-64864632(+) m6A CDS       24981863//27773535//22608085
chr7:64864715-64864716(+) m6A CDS       24981863//27773535//22608085
chr7:64864724-64864725(+) m6A CDS       24981863//27773535//22608085
chr7:64864775-64864776(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64864782-64864783(+) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr7:64864820-64864821(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:64864830-64864831(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:64864836-64864837(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:64864876-64864877(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:64864958-64864959(+) m6A 3'UTR       24284625//24981863//22608085
chr7:64865063-64865064(+) m6A 3'UTR       24981863//22608085
chr7:64865153-64865154(+) m6A 3'UTR       24981863//22608085
chr7:64865232-64865233(+) m6A 3'UTR       24981863
chr7:64865255-64865256(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1294
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Serum     24797360
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
ZNF92
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1294
Interactor2: ZNF92

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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