Detail Information

Basic Information:


  VIRBase ID:  

HHID00069664

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1294:           HSDL1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1294 HSDL1
miRBase
Accession/Entrez ID		 MIMAT0005884 83693
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - SDR12C3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1294
rs1162939290 chr5:154347163    G/T
rs1179835339 chr5:154347171    G/GTATA
rs1237976003 chr5:154347166    T/C
rs1255234532 chr5:154347174    T/A
rs1465013068 chr5:154347169    T/C
rs189565536 chr5:154347168    G/T
rs1211754242 chr5:154347158    G/A
rs1341512450 chr5:154347155    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR HSDL1
chr16:84162375(-) A-I      intronic
chr16:84156203(-) A-I      3'UTR
chr16:84156229(-) A-I      3'UTR
chr16:84156184(-) A-I      3'UTR
chr16:84156236(-) A-I      3'UTR
chr16:84165567(-) A-I      intronic
chr16:84162381(-) A-I      intronic
chr16:84161025(-) A-I      intronic
chr16:84161750(-) A-I      intronic
chr16:84160913(-) A-I      intronic
chr16:84162495(-) A-I      intronic
chr16:84165558(-) A-I      intronic
chr16:84168045(-) A-I      intronic
chr16:84168055(-) A-I      intronic
chr16:84168674(-) A-I      intronic
chr16:84168134(-) A-I      intronic
chr16:84162473(-) A-I      intronic
chr16:84168645(-) A-I      intronic
chr16:84168665(-) A-I      intronic
chr16:84162490(-) A-I      intronic
chr16:84160844(-) A-I      intronic
chr16:84160959(-) A-I      intronic
chr16:84165565(-) A-I      intronic
chr16:84159586(-) A-I      intronic
chr16:84160893(-) A-I      intronic
chr16:84167251(-) A-I      intronic
chr16:84162355(-) A-I      intronic
chr16:84162736(-) A-I      intronic
chr16:84168036(-) A-I      intronic
chr16:84162743(-) A-I      intronic
chr16:84162585(-) A-I      intronic
chr16:84162342(-) A-I      intronic
chr16:84168203(-) A-I      intronic
chr16:84162380(-) A-I      intronic
chr16:84176130(-) A-I      intronic
chr16:84165187(-) A-I      intronic
chr16:84162731(-) A-I      intronic
chr16:84156039(-) A-I      3'UTR
chr16:84161633(-) A-I      intronic
chr16:84161772(-) A-I      intronic
chr16:84161886(-) A-I      intronic
chr16:84177557(-) A-I      intronic
chr16:84161782(-) A-I      intronic
chr16:84168204(-) A-I      intronic
chr16:84177496(-) A-I      intronic
chr16:84162441(-) A-I      intronic
chr16:84162467(-) A-I      intronic
chr16:84160984(-) A-I      intronic
chr16:84159645(-) A-I      intronic
chr16:84161093(-) A-I      intronic
chr16:84162492(-) A-I      intronic
chr16:84162819(-) A-I      intronic
chr16:84177405(-) A-I      intronic
chr16:84162805(-) A-I      intronic
chr16:84161731(-) A-I      intronic
chr16:84159519(-) A-I      intronic
chr16:84161024(-) A-I      intronic
chr16:84162451(-) A-I      intronic
chr16:84168135(-) A-I      intronic
chr16:84165186(-) A-I      intronic
chr16:84160885(-) A-I      intronic
chr16:84162477(-) A-I      intronic
chr16:84177584(-) A-I      intronic
chr16:84161855(-) A-I      intronic
chr16:84159596(-) A-I      intronic
chr16:84162797(-) A-I      intronic
chr16:84167277(-) A-I      intronic
chr16:84168625(-) A-I      intronic
chr16:84160917(-) A-I      intronic
chr16:84161837(-) A-I      intronic
chr16:84160988(-) A-I      intronic
chr16:84162506(-) A-I      intronic
chr16:84168594(-) A-I      intronic
chr16:84174034(-) A-I      intronic
chr16:84161649(-) A-I      intronic
chr16:84167083(-) A-I      intronic
chr16:84167152(-) A-I      intronic
chr16:84176108(-) A-I      intronic
chr16:84160998(-) A-I      intronic
chr16:84167248(-) A-I      intronic
chr16:84167971(-) A-I      intronic
chr16:84168065(-) A-I      intronic
chr16:84162491(-) A-I      intronic
chr16:84160989(-) A-I      intronic
chr16:84168775(-) A-I      intronic
chr16:84165513(-) A-I      intronic
chr16:84165258(-) A-I      intronic
chr16:84162396(-) A-I      intronic
chr16:84161636(-) A-I      intronic
chr16:84167271(-) A-I      intronic
chr16:84161825(-) A-I      intronic
chr16:84156208(-) A-I      3'UTR
chr16:84156127(-) A-I      3'UTR
chr16:84156101(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HSDL1
chr16:84156296-84156297(-) m6A 3'UTR//exon       27773535
chr16:84156366-84156367(-) m6A 3'UTR//exon       27773535
chr16:84156431-84156432(-) m6A 3'UTR//exon       24284625//27773535
chr16:84156441-84156442(-) m6A 3'UTR//exon       27773535
chr16:84156459-84156460(-) m6A 3'UTR//exon//intron       27773535
chr16:84156484-84156485(-) m6A 3'UTR//exon//intron       27773535
chr16:84156625-84156626(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:84156725-84156726(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:84156834-84156835(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:84156854-84156855(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:84156900-84156901(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:84156916-84156917(-) Y 3'UTR//exon       26075521
chr16:84157003-84157004(-) m6A 3'UTR//exon       24284625//27773535//22608085
chr16:84157026-84157027(-) m6A 3'UTR//exon       24284625//22608085
chr16:84157077-84157078(-) m6A 3'UTR//exon       24284625//22608085
chr16:84157104-84157105(-) m6A 3'UTR//exon       24284625
chr16:84158066-84158067(-) m6A 3'UTR//exon       24981863//22608085
chr16:84158098-84158099(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr16:84158167-84158168(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr16:84158193-84158194(-) m6A 3'UTR//exon       24981863//22608085
chr16:84158280-84158281(-) Y CDS       26075521
chr16:84163726-84163727(-) m6A CDS       24284625//24209618//24981863//27371828//22608085
chr16:84163741-84163742(-) m6A CDS       24284625//24209618//24981863//27371828//22608085
chr16:84163753-84163754(-) m6A CDS       24284625//24209618//24981863//27371828//22608085
chr16:84163831-84163832(-) m6A CDS//intron       24284625//24209618//24981863//27371828//22608085
chr16:84163882-84163883(-) m6A CDS//intron       24284625//24209618//24981863//27371828//22608085
chr16:84163901-84163902(-) m6A CDS//intron       24284625//24209618//24981863//27371828//22608085
chr16:84163927-84163928(-) m6A CDS//intron       24209618//24981863//22608085
chr16:84164593-84164594(-) m6A exon//intron       24209618
chr16:84164614-84164615(-) m6A exon//intron       24209618
chr16:84169162-84169163(-) m6A 5'UTR//exon       24284625//24209618//25456834//27371828//27773536
chr16:84172892-84172893(-) m6A 5'UTR//intron       24284625//24209618//25456834//27371828//27773536
chr16:84177930-84177931(-) m6A 5'UTR//intron       -
chr16:84177935-84177936(-) m6A 5'UTR//intron       -
chr16:84178026-84178027(-) m6A 5'UTR//intron       24981863
chr16:84178700-84178701(-) m6A 5'UTR//exon       24981863
chr16:84178713-84178714(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1294
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Serum     24797360
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
HSDL1
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1294
Interactor2: HSDL1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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