Basic Information:

  VIRBase ID:  

HHID00069635

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1294:  MIMAT0005884          CARM1:  NM_001370088     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1294	CARM1
miRBase Accession/Entrez ID	MIMAT0005884	10498
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	PRMT4

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-1294	rs1162939290 chr5:154347163    G/T rs1179835339 chr5:154347171    G/GTATA rs1237976003 chr5:154347166    T/C rs1255234532 chr5:154347174    T/A rs1465013068 chr5:154347169    T/C rs189565536 chr5:154347168    G/T rs1211754242 chr5:154347158    G/A rs1341512450 chr5:154347155    T/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CARM1	chr19:11028988(+) A-I      intronic chr19:11028940(+) A-I      intronic chr19:11029002(+) A-I      intronic chr19:11029043(+) A-I      intronic chr19:11021750(+) A-I      intronic chr19:11021732(+) A-I      intronic chr19:11021767(+) A-I      intronic chr19:11021859(+) A-I      intronic chr19:11027975(+) A-I      intronic chr19:11028918(+) A-I      intronic chr19:11029037(+) A-I      intronic chr19:11028573(+) A-I      intronic chr19:11028563(+) A-I      intronic chr19:11028562(+) A-I      intronic chr19:11024195(+) A-I      intronic chr19:11024146(+) A-I      intronic chr19:11023860(+) A-I      intronic chr19:11021636(+) A-I      intronic chr19:11021618(+) A-I      intronic chr19:11021306(+) A-I      intronic chr19:11021305(+) A-I      intronic chr19:11021303(+) A-I      intronic chr19:11021301(+) A-I      intronic chr19:11021036(+) A-I      intronic chr19:11021030(+) A-I      intronic chr19:11020992(+) A-I      intronic chr19:11020988(+) A-I      intronic chr19:11020898(+) A-I      intronic chr19:11020897(+) A-I      intronic chr19:11020879(+) A-I      intronic chr19:11020319(+) A-I      intronic chr19:11020229(+) A-I      intronic chr19:10986347(+) A-I      intronic chr19:10985621(+) A-I      intronic chr19:10986817(+) A-I      intronic chr19:10986802(+) A-I      intronic chr19:10994615(+) A-I      intronic chr19:10994644(+) A-I      intronic chr19:10995480(+) A-I      intronic chr19:10995481(+) A-I      intronic chr19:10995510(+) A-I      intronic chr19:10995517(+) A-I      intronic chr19:10995591(+) A-I      intronic chr19:10996802(+) A-I      intronic chr19:10996807(+) A-I      intronic chr19:10996832(+) A-I      intronic chr19:10996833(+) A-I      intronic chr19:10997072(+) A-I      intronic chr19:10997119(+) A-I      intronic chr19:10986307(+) A-I      intronic chr19:10986218(+) A-I      intronic chr19:10986181(+) A-I      intronic chr19:10986157(+) A-I      intronic chr19:10986150(+) A-I      intronic chr19:10986120(+) A-I      intronic chr19:10985687(+) A-I      intronic chr19:10997248(+) A-I      intronic chr19:10985545(+) A-I      intronic chr19:10985342(+) A-I      intronic chr19:10997249(+) A-I      intronic chr19:10998380(+) A-I      intronic chr19:11001620(+) A-I      intronic chr19:11005995(+) A-I      intronic chr19:11006016(+) A-I      intronic chr19:11011489(+) A-I      intronic chr19:11011496(+) A-I      intronic chr19:11011499(+) A-I      intronic chr19:11011541(+) A-I      intronic chr19:11011558(+) A-I      intronic chr19:11011621(+) A-I      intronic chr19:11011732(+) A-I      intronic chr19:11011737(+) A-I      intronic chr19:11011761(+) A-I      intronic chr19:11012341(+) A-I      intronic chr19:11012403(+) A-I      intronic chr19:11012416(+) A-I      intronic chr19:11012437(+) A-I      intronic chr19:11012471(+) A-I      intronic chr19:11012613(+) A-I      intronic chr19:11012664(+) A-I      intronic chr19:11012769(+) A-I      intronic chr19:11012770(+) A-I      intronic chr19:10984050(+) A-I      intronic chr19:10984092(+) A-I      intronic chr19:10984111(+) A-I      intronic chr19:10984186(+) A-I      intronic chr19:10984445(+) A-I      intronic chr19:10984452(+) A-I      intronic chr19:10984500(+) A-I      intronic chr19:10984502(+) A-I      intronic chr19:10984514(+) A-I      intronic chr19:10984842(+) A-I      intronic chr19:10985079(+) A-I      intronic chr19:10985087(+) A-I      intronic chr19:10985181(+) A-I      intronic chr19:10985198(+) A-I      intronic chr19:10985205(+) A-I      intronic chr19:10985338(+) A-I      intronic chr19:11013402(+) A-I      intronic chr19:11013495(+) A-I      intronic chr19:11013507(+) A-I      intronic chr19:11013508(+) A-I      intronic chr19:11019996(+) A-I      intronic chr19:11011477(+) A-I      intronic chr19:10994609(+) A-I      intronic chr19:10994532(+) A-I      intronic chr19:10994529(+) A-I      intronic chr19:10994523(+) A-I      intronic chr19:10994508(+) A-I      intronic chr19:10994493(+) A-I      intronic chr19:10994484(+) A-I      intronic chr19:10994465(+) A-I      intronic chr19:10994438(+) A-I      intronic chr19:10994419(+) A-I      intronic chr19:10994409(+) A-I      intronic chr19:10994382(+) A-I      intronic chr19:10994330(+) A-I      intronic chr19:10993427(+) A-I      intronic chr19:10993418(+) A-I      intronic chr19:10993271(+) A-I      intronic chr19:10993269(+) A-I      intronic chr19:10991794(+) A-I      intronic chr19:10991767(+) A-I      intronic chr19:10991696(+) A-I      intronic chr19:10991693(+) A-I      intronic chr19:10991568(+) A-I      intronic chr19:10991213(+) A-I      intronic chr19:10991115(+) A-I      intronic chr19:10991061(+) A-I      intronic chr19:10990583(+) A-I      intronic chr19:10990525(+) A-I      intronic chr19:10990520(+) A-I      intronic chr19:10990415(+) A-I      intronic chr19:10990375(+) A-I      intronic chr19:10988336(+) A-I      intronic chr19:10986970(+) A-I      intronic chr19:10990390(+) A-I      intronic chr19:11011825(+) A-I      intronic chr19:11028950(+) A-I      intronic chr19:11011566(+) A-I      intronic chr19:11023898(+) A-I      intronic chr19:11010866(+) A-I      intronic chr19:11021502(+) A-I      intronic chr19:11024026(+) A-I      intronic chr19:11028552(+) A-I      intronic chr19:11021165(+) A-I      intronic chr19:10984177(+) A-I      intronic chr19:10985290(+) A-I      intronic chr19:10984074(+) A-I      intronic chr19:11013167(+) A-I      intronic chr19:10997360(+) A-I      intronic chr19:10984060(+) A-I      intronic chr19:11028494(+) A-I      intronic chr19:11027885(+) A-I      intronic chr19:10996619(+) A-I      intronic chr19:10990423(+) A-I      intronic chr19:11027976(+) A-I      intronic chr19:11021425(+) A-I      intronic chr19:10994859(+) A-I      intronic chr19:10994809(+) A-I      intronic chr19:11028650(+) A-I      intronic chr19:10994972(+) A-I      intronic chr19:10988178(+) A-I      intronic chr19:10993311(+) A-I      intronic chr19:10997342(+) A-I      intronic chr19:11020875(+) A-I      intronic chr19:10985167(+) A-I      intronic chr19:10995131(+) A-I      intronic chr19:10993249(+) A-I      intronic chr19:11023881(+) A-I      intronic chr19:11012363(+) A-I      intronic chr19:11021359(+) A-I      intronic chr19:11013050(+) A-I      intronic chr19:10988155(+) A-I      intronic chr19:11021514(+) A-I      intronic chr19:10991585(+) A-I      intronic chr19:11005955(+) A-I      intronic chr19:10994534(+) A-I      intronic chr19:11013542(+) A-I      intronic chr19:11000742(+) A-I      intronic chr19:11029179(+) A-I      intronic chr19:10995547(+) A-I      intronic chr19:11027929(+) A-I      intronic chr19:11021145(+) A-I      intronic chr19:10991633(+) A-I      intronic chr19:11028513(+) A-I      intronic chr19:11029695(+) A-I      intronic chr19:11029038(+) A-I      intronic chr19:10994763(+) A-I      intronic chr19:10991091(+) A-I      intronic chr19:10995082(+) A-I      intronic chr19:10985277(+) A-I      intronic chr19:11029041(+) A-I      intronic chr19:11012419(+) A-I      intronic chr19:11001273(+) A-I      intronic chr19:10984171(+) A-I      intronic chr19:11013458(+) A-I      intronic chr19:10993452(+) A-I      intronic chr19:11020946(+) A-I      intronic chr19:11027908(+) A-I      intronic chr19:11027668(+) A-I      intronic chr19:11028568(+) A-I      intronic chr19:10984420(+) A-I      intronic chr19:10993423(+) A-I      intronic chr19:11013192(+) A-I      intronic chr19:10991793(+) A-I      intronic chr19:10985539(+) A-I      intronic chr19:11005981(+) A-I      intronic chr19:11028455(+) A-I      intronic chr19:11029104(+) A-I      intronic chr19:10997009(+) A-I      intronic chr19:11010619(+) A-I      intronic chr19:10985537(+) A-I      intronic chr19:11029027(+) A-I      intronic chr19:10994333(+) A-I      intronic chr19:11028143(+) A-I      intronic chr19:11024155(+) A-I      intronic chr19:10985288(+) A-I      intronic chr19:11012867(+) A-I      intronic chr19:10984577(+) A-I      intronic chr19:10990416(+) A-I      intronic chr19:10993383(+) A-I      intronic chr19:10997448(+) A-I      intronic chr19:11027681(+) A-I      intronic chr19:11029072(+) A-I      intronic chr19:11021667(+) A-I      intronic chr19:11012418(+) A-I      intronic chr19:11028920(+) A-I      intronic chr19:11023979(+) A-I      intronic chr19:11011880(+) A-I      intronic chr19:11010538(+) A-I      intronic chr19:11028571(+) A-I      intronic chr19:11011758(+) A-I      intronic chr19:11023867(+) A-I      intronic chr19:11020195(+) A-I      intronic chr19:11001141(+) A-I      intronic chr19:11021836(+) A-I      intronic chr19:11027687(+) A-I      intronic chr19:11012718(+) A-I      intronic chr19:10985168(+) A-I      intronic chr19:11011722(+) A-I      intronic chr19:11029019(+) A-I      intronic chr19:10985620(+) A-I      intronic chr19:10997370(+) A-I      intronic chr19:11000821(+) A-I      intronic chr19:10985483(+) A-I      intronic chr19:11010841(+) A-I      intronic chr19:11012496(+) A-I      intronic chr19:11023845(+) A-I      intronic chr19:11029741(+) A-I      intronic chr19:11021170(+) A-I      intronic chr19:11028468(+) A-I      intronic chr19:10985555(+) A-I      intronic chr19:11012866(+) A-I      intronic chr19:11012481(+) A-I      intronic chr19:11008922(+) A-I      intronic chr19:10994329(+) A-I      intronic chr19:10985289(+) A-I      intronic chr19:10993317(+) A-I      intronic chr19:11029133(+) A-I      intronic chr19:11010751(+) A-I      intronic chr19:10993446(+) A-I      intronic chr19:11021590(+) A-I      intronic chr19:10994316(+) A-I      intronic chr19:10994804(+) A-I      intronic chr19:11012510(+) A-I      intronic chr19:10994866(+) A-I      intronic chr19:10995381(+) A-I      intronic chr19:11012811(+) A-I      intronic chr19:10994252(+) A-I      intronic chr19:10985547(+) A-I      intronic chr19:11021371(+) A-I      intronic chr19:10985227(+) A-I      intronic chr19:10997045(+) A-I      intronic chr19:11023861(+) A-I      intronic chr19:11011839(+) A-I      intronic chr19:11023957(+) A-I      intronic chr19:10991691(+) A-I      intronic chr19:11029028(+) A-I      intronic chr19:10984083(+) A-I      intronic chr19:10984110(+) A-I      intronic chr19:11027987(+) A-I      intronic chr19:10984093(+) A-I      intronic chr19:11021487(+) A-I      intronic chr19:11021501(+) A-I      intronic chr19:10984094(+) A-I      intronic chr19:10994897(+) A-I      intronic chr19:10988701(+) A-I      intronic chr19:11012799(+) A-I      intronic chr19:10990500(+) A-I      intronic chr19:11021787(+) A-I      intronic chr19:11028463(+) A-I      intronic chr19:10991277(+) A-I      intronic chr19:10994769(+) A-I      intronic chr19:10996999(+) A-I      intronic chr19:10985538(+) A-I      intronic chr19:11029031(+) A-I      intronic chr19:10993481(+) A-I      intronic chr19:11024093(+) A-I      intronic chr19:10998341(+) A-I      intronic chr19:10985629(+) A-I      intronic chr19:11012854(+) A-I      intronic chr19:10994334(+) A-I      intronic chr19:10985540(+) A-I      intronic chr19:11010577(+) A-I      intronic chr19:10991721(+) A-I      intronic chr19:11003853(+) A-I      intronic chr19:11012579(+) A-I      intronic chr19:10985348(+) A-I      intronic chr19:11021598(+) A-I      intronic chr19:11010581(+) A-I      intronic chr19:11028649(+) A-I      intronic chr19:11012557(+) A-I      intronic chr19:10993298(+) A-I      intronic chr19:11012665(+) A-I      intronic chr19:11028548(+) A-I      intronic chr19:10991781(+) A-I      intronic chr19:10985179(+) A-I      intronic chr19:11013044(+) A-I      intronic chr19:10984396(+) A-I      intronic chr19:11010857(+) A-I      intronic chr19:11021841(+) A-I      intronic chr19:11012431(+) A-I      intronic chr19:11029082(+) A-I      intronic chr19:10985639(+) A-I      intronic chr19:11027930(+) A-I      intronic chr19:10985129(+) A-I      intronic chr19:11020302(+) A-I      intronic chr19:10985536(+) A-I      intronic chr19:10985256(+) A-I      intronic chr19:11001257(+) A-I      intronic chr19:11018214(+) A-I      intronic chr19:11012574(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CARM1	chr19:11015664(+) A-I exon CDS    19478186 chr19:10984083(+) A-G intron -    22484847 chr19:10984084(+) A-G intron -    22484847 chr19:10984093(+) A-G intron -    22484847 chr19:10984094(+) A-G intron -    22484847 chr19:10985688(+) A-G intron -    22484847 chr19:11020415(+) A-C intron -    22484847 chr19:11027663(+) A-G intron -    22484847 chr19:11027908(+) A-G intron -    22484847 chr19:11027929(+) A-G intron -    22484847 chr19:11027976(+) A-G intron -    22484847 chr19:11028424(+) T-C intron -    22484847 chr19:11028920(+) A-G intron -    22484847 chr19:11029104(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CARM1	chr19:10982571-10982572(+) m6A CDS       24209618//22575960 chr19:11015667-11015668(+) m6A CDS//intron       22575960 chr19:11029692-11029693(+) m6A exon//intron       27773535 chr19:11029979-11029980(+) m6A exon//intron       27773535 chr19:11030623-11030624(+) Y 3'UTR//CDS//exon       26075521 chr19:11031223-11031224(+) m6A 3'UTR//CDS//exon//intron       22575960 chr19:11031369-11031370(+) m6A 3'UTR//CDS//exon       22575960 chr19:11031374-11031375(+) m6A 3'UTR//CDS//exon       22575960 chr19:11031411-11031412(+) m6A 3'UTR//CDS//exon       22575960 chr19:11032448-11032449(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr19:11032465-11032466(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr19:11032531-11032532(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr19:11032562-11032563(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr19:11032568-11032569(+) m6A 3'UTR//exon       24284625//24981863//22575960 chr19:11032726-11032727(+) m6A 3'UTR       24284625 chr19:11032901-11032902(+) m6A 3'UTR       - chr19:11032919-11032920(+) m6A 3'UTR       - chr19:11032971-11032972(+) m6A 3'UTR       - chr19:11033226-11033227(+) m6A 3'UTR       - chr19:11033232-11033233(+) m6A 3'UTR       - chr19:11033372-11033373(+) m6A 3'UTR       - chr19:11033383-11033384(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-1294	Exosome Plasma     23663360 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Serum     24797360 Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	CARM1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1294
Interactor2: CARM1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.