Detail Information

Basic Information:


  VIRBase ID:  

HHID00069622

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1294:           SLAMF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1294 SLAMF1
miRBase
Accession/Entrez ID		 MIMAT0005884 6504
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD150//CDw150//SLAM

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1294
rs1162939290 chr5:154347163    G/T
rs1179835339 chr5:154347171    G/GTATA
rs1237976003 chr5:154347166    T/C
rs1255234532 chr5:154347174    T/A
rs1465013068 chr5:154347169    T/C
rs189565536 chr5:154347168    G/T
rs1211754242 chr5:154347158    G/A
rs1341512450 chr5:154347155    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLAMF1
chr1:160587723(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLAMF1
chr1:160586913(-) G-A intron -    22484847
chr1:160586955(-) A-T intron -    22484847
chr1:160586956(-) A-T intron -    22484847
chr1:160586967(-) T-C intron -    22484847
chr1:160587723(-) A-G intron -    22484847
chr1:160605543(-) C-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLAMF1
chr1:160578928-160578929(-) m6A 3'UTR       26404942
chr1:160579628-160579629(-) m6A 3'UTR       26404942
chr1:160579650-160579651(-) m6A 3'UTR       26404942
chr1:160579662-160579663(-) m6A 3'UTR       -
chr1:160579669-160579670(-) m6A 3'UTR       -
chr1:160579676-160579677(-) m6A 3'UTR       -
chr1:160579746-160579747(-) m6A 3'UTR       -
chr1:160579859-160579860(-) m6A 3'UTR       -
chr1:160579866-160579867(-) m6A 3'UTR       -
chr1:160579873-160579874(-) m6A 3'UTR       -
chr1:160579908-160579909(-) m6A 3'UTR       -
chr1:160579932-160579933(-) m6A 3'UTR       -
chr1:160579985-160579986(-) m6A 3'UTR       -
chr1:160580071-160580072(-) m6A 3'UTR//CDS       28052920//26404942//27371828
chr1:160580152-160580153(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580180-160580181(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828
chr1:160580193-160580194(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828
chr1:160580212-160580213(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828
chr1:160580239-160580240(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828
chr1:160580257-160580258(-) m6A 3'UTR//intron       28052920//26404942//27773535//27371828
chr1:160580312-160580313(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580370-160580371(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580443-160580444(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580476-160580477(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580483-160580484(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580493-160580494(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580516-160580517(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580528-160580529(-) m6A 3'UTR//intron       28052920//26404942//27371828
chr1:160580584-160580585(-) m6A CDS//intron       28052920//26404942//27371828
chr1:160582332-160582333(-) m6A CDS//intron       -
chr1:160582355-160582356(-) m6A CDS//intron       -
chr1:160585535-160585536(-) m6A intron       -
chr1:160585542-160585543(-) m6A intron       -
chr1:160589571-160589572(-) m6A CDS//intron       -
chr1:160604441-160604442(-) m6A CDS//intron       28052920
chr1:160604545-160604546(-) m6A CDS//intron       28052920//26404942
chr1:160604593-160604594(-) m6A CDS//intron       26404942
chr1:160604633-160604634(-) m6A CDS//intron       26404942
chr1:160607168-160607169(-) m6A CDS//exon       28052920//26404942//27371828
chr1:160607180-160607181(-) m6A CDS//exon       28052920//26404942//27371828
chr1:160607225-160607226(-) m6A CDS//exon       28052920//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1294
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Serum     24797360
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
SLAMF1
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1294
Interactor2: SLAMF1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...