Basic Information:
VIRBase ID: HHID00069590
Virus: Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)
Host: Homo sapiens
Confidence Score: 0.4752
Interaction Type: Host-Host interaction
Predicted Binding:
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Interactor Information:
Interactor1
Interactor2
Symbol
hsa-miR-548k
PIGW
miRBase Accession/Entrez ID
MIMAT0005882
284098
Organism
Homo sapiens
Homo sapiens
Category
miRNA
mRNA
Alias
-
Gwt1//HPMRS5
ncRNA SNP information:
Resource
Symbol
SNP ID
SNP Position
Ref/Alt
miRNASNP-v3
hsa-miR-548k
RNA Editing:
Resource
Symbol
Editing Position
Change
Genetic Region
RADAR
PIGW
RNA Modification:
Resource
Symbol
ModificationPosition
Type
Genomic Context
PMID
RMBase
PIGW
RNA Localization:
Resource
Symbol
Subcellular Localization
Tissue or Cell Line
PMID
RNALocate
hsa-miR-548k
PIGW
Interaction Network (The top 100 interactions) :
Interactor1: hsa-miR-548k
Interactor2: PIGW
Evidence Support:
Weak-Evidence
PAR-CLIP
Support Database
ViRBase
References:
PMID
22291592
Target region
CDS
Source
ViRBase
Interactor1 expression
None
Tissue or cell line
EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells
Interactor2 expression
None
Description
We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.