Detail Information

Basic Information:


  VIRBase ID:  

HHID00069488

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548k:           IDI1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548k IDI1
miRBase
Accession/Entrez ID		 MIMAT0005882 3422
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - IPP1//IPPI1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548k
rs1287903682 chr11:70283986    A/T
rs1348444734 chr11:70284001    T/G
rs368851728 chr11:70283998    G/A
rs549537039 chr11:70283997    C/A
rs549537039 chr11:70283997    C/T
rs759199954 chr11:70284000    A/G
rs772907313 chr11:70283996    G/A
rs1480700900 chr11:70283992    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IDI1
chr10:1091513(-) A-I      intronic
chr10:1091413(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IDI1
chr10:1086209-1086210(-) m6A 3'UTR       27773535
chr10:1086232-1086233(-) m6A 3'UTR       27773535
chr10:1087267-1087268(-) m6A CDS//exon       24981863//28052920//26404942//27773535
chr10:1087276-1087277(-) m6A CDS//exon       24981863//28052920//26404942//27773535
chr10:1087372-1087373(-) m6A CDS//exon       -
chr10:1089451-1089452(-) m6A exon//intron       27371828
chr10:1089468-1089469(-) m6A exon//intron       24284625//25456834//27371828
chr10:1089570-1089571(-) m6A exon//intron       24284625//25456834//27773535//27371828
chr10:1089591-1089592(-) m6A exon//intron       25456834//27371828
chr10:1090038-1090039(-) Y CDS//exon//intron       25219674//26075521
chr10:1094409-1094410(-) m6A 5'UTR//intron       -
chr10:1094424-1094425(-) m6A 5'UTR//intron       -
chr10:1094434-1094435(-) m6A 5'UTR//intron       -
chr10:1094471-1094472(-) m6A 5'UTR//intron       -
chr10:1094486-1094487(-) m6A 5'UTR//intron       27371828
chr10:1094493-1094494(-) m6A 5'UTR//intron       27371828
chr10:1094502-1094503(-) m6A 5'UTR//intron       27371828
chr10:1094648-1094649(-) m6A 5'UTR//intron       27371828//27773536
chr10:1094679-1094680(-) m6A 5'UTR//intron       27371828//27773536
chr10:1094772-1094773(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536
chr10:1094835-1094836(-) m6A CDS//exon       25456834//24981863//27371828//27773536
chr10:1094863-1094864(-) m6A CDS//exon       25456834//24981863//27371828//27773536
chr10:1094931-1094932(-) m6A CDS//exon       25456834//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548k
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
IDI1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548k
Interactor2: IDI1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...