Detail Information

Basic Information:


  VIRBase ID:  

HHID00069410

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548j-5p:           SLFN5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548j-5p SLFN5
miRBase
Accession/Entrez ID		 MIMAT0005875 162394
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548j-5p
rs1210209539 chr22:26555275    C/T
rs545900525 chr22:26555280    G/C
rs565141718 chr22:26555283    C/A
rs565141718 chr22:26555283    C/G
rs565141718 chr22:26555283    C/T
rs751780445 chr22:26555284    G/A
rs753744163 chr22:26555282    C/A
rs757533254 chr22:26555285    C/A
rs367750295 chr22:26555290    A/G
rs976434292 chr22:26555292    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLFN5
chr17:33590682(+) A-I      intronic
chr17:33590643(+) A-I      intronic
chr17:33590333(+) A-I      intronic
chr17:33590229(+) A-I      intronic
chr17:33589808(+) A-I      intronic
chr17:33590295(+) A-I      intronic
chr17:33590699(+) A-I      intronic
chr17:33590291(+) A-I      intronic
chr17:33590727(+) A-I      intronic
chr17:33590691(+) A-I      intronic
chr17:33590711(+) A-I      intronic
chr17:33590695(+) A-I      intronic
chr17:33590683(+) A-I      intronic
chr17:33590692(+) A-I      intronic
chr17:33590666(+) A-I      intronic
chr17:33589727(+) A-I      intronic
chr17:33589320(+) A-I      intronic
chr17:33589680(+) A-I      intronic
chr17:33578813(+) A-I      intronic
chr17:33589696(+) A-I      intronic
chr17:33571791(+) A-I      intronic
chr17:33589870(+) A-I      intronic
chr17:33571786(+) A-I      intronic
chr17:33589798(+) A-I      intronic
chr17:33590754(+) A-I      intronic
chr17:33590738(+) A-I      intronic
chr17:33578684(+) A-I      intronic
chr17:33590299(+) A-I      intronic
chr17:33578826(+) A-I      intronic
chr17:33590181(+) A-I      intronic
chr17:33578703(+) A-I      intronic
chr17:33578953(+) A-I      intronic
chr17:33571689(+) A-I      intronic
chr17:33590770(+) A-I      intronic
chr17:33589252(+) A-I      intronic
chr17:33579356(+) A-I      intronic
chr17:33588918(+) A-I      intronic
chr17:33590772(+) A-I      intronic
chr17:33588751(+) A-I      intronic
chr17:33588798(+) A-I      intronic
chr17:33588427(+) A-I      intronic
chr17:33589756(+) A-I      intronic
chr17:33590430(+) A-I      intronic
chr17:33578685(+) A-I      intronic
chr17:33590819(+) A-I      intronic
chr17:33590219(+) A-I      intronic
chr17:33589815(+) A-I      intronic
chr17:33578850(+) A-I      intronic
chr17:33578756(+) A-I      intronic
chr17:33590686(+) A-I      intronic
chr17:33589691(+) A-I      intronic
chr17:33590757(+) A-I      intronic
chr17:33588872(+) A-I      intronic
chr17:33588472(+) A-I      intronic
chr17:33590843(+) A-I      intronic
chr17:33590230(+) A-I      intronic
chr17:33579376(+) A-I      intronic
chr17:33588492(+) A-I      intronic
chr17:33590777(+) A-I      intronic
chr17:33588974(+) A-I      intronic
chr17:33571881(+) A-I      intronic
chr17:33588597(+) A-I      intronic
chr17:33590359(+) A-I      intronic
chr17:33588972(+) A-I      intronic
chr17:33590818(+) A-I      intronic
chr17:33590440(+) A-I      intronic
chr17:33590684(+) A-I      intronic
chr17:33590250(+) A-I      intronic
chr17:33588898(+) A-I      intronic
chr17:33588794(+) A-I      intronic
chr17:33588609(+) A-I      intronic
chr17:33589242(+) A-I      intronic
chr17:33588795(+) A-I      intronic
chr17:33588775(+) A-I      intronic
chr17:33589681(+) A-I      intronic
chr17:33590254(+) A-I      intronic
chr17:33588834(+) A-I      intronic
chr17:33590774(+) A-I      intronic
chr17:33579351(+) A-I      intronic
chr17:33590840(+) A-I      intronic
chr17:33589858(+) A-I      intronic
chr17:33588830(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLFN5
chr17:33588472(+) A-G intron -    22484847
chr17:33590254(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLFN5
chr17:33570101-33570102(+) m6A 5'UTR       -
chr17:33570153-33570154(+) m6A 5'UTR       24284625//24209618//24981863//22575960//22608085
chr17:33585673-33585674(+) m6A 5'UTR       24284625//24209618//24981863//22575960//22608085
chr17:33585737-33585738(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33585781-33585782(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr17:33585803-33585804(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr17:33585822-33585823(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr17:33585899-33585900(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33585986-33585987(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33586016-33586017(+) m6A CDS       24284625//24209618//24981863//22608085
chr17:33586075-33586076(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr17:33586129-33586130(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr17:33586135-33586136(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr17:33586266-33586267(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33586337-33586338(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33586411-33586412(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33586448-33586449(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:33586658-33586659(+) m6A CDS       24284625//24209618//24981863//26404942//22608085
chr17:33586671-33586672(+) m6A CDS       24284625//24209618//24981863
chr17:33586693-33586694(+) m6A CDS       24284625//24209618//24981863
chr17:33591210-33591211(+) m6A CDS//intron       24284625//24209618//24981863//22608085
chr17:33591247-33591248(+) m6A CDS//intron       24284625//24981863//22608085
chr17:33591268-33591269(+) m6A CDS//intron       24284625//24981863//22608085
chr17:33591276-33591277(+) m6A CDS//intron       24284625//24981863//22608085
chr17:33591402-33591403(+) m6A CDS//intron       24284625//24981863
chr17:33591723-33591724(+) m6A CDS//intron       24284625//24981863//22575960
chr17:33591739-33591740(+) m6A CDS//intron       24284625//24981863//22575960
chr17:33591762-33591763(+) m6A CDS//intron       24284625//24981863//22575960
chr17:33591773-33591774(+) m6A CDS//intron       24284625//24981863//22575960
chr17:33591815-33591816(+) m6A CDS//intron       24284625//22575960
chr17:33591868-33591869(+) m6A CDS//intron       24284625//24981863//22575960
chr17:33591897-33591898(+) m6A CDS//intron       24284625//24981863//22575960
chr17:33592104-33592105(+) m6A CDS       24284625//24209618//24981863//22575960
chr17:33592130-33592131(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960
chr17:33592143-33592144(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960
chr17:33592153-33592154(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960
chr17:33592209-33592210(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960
chr17:33592241-33592242(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960
chr17:33592281-33592282(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863
chr17:33592292-33592293(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863
chr17:33592332-33592333(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22608085
chr17:33592471-33592472(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr17:33592518-33592519(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr17:33592524-33592525(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr17:33592644-33592645(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr17:33592675-33592676(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr17:33592758-33592759(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960
chr17:33592876-33592877(+) m6A 3'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr17:33592913-33592914(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr17:33592928-33592929(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr17:33592964-33592965(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr17:33592978-33592979(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr17:33593073-33593074(+) m6A 3'UTR       24284625//24209618//24981863
chr17:33593100-33593101(+) m6A 3'UTR       24284625//24209618//24981863
chr17:33593144-33593145(+) m6A 3'UTR       24284625//24981863
chr17:33593152-33593153(+) m6A 3'UTR       24284625//24981863
chr17:33593280-33593281(+) m6A 3'UTR       24284625
chr17:33593314-33593315(+) m6A 3'UTR       24284625
chr17:33594757-33594758(+) m6A 3'UTR       24981863
chr17:33595353-33595354(+) m6A 3'UTR       24981863
chr17:33595402-33595403(+) m6A 3'UTR       24981863
chr17:33595433-33595434(+) m6A 3'UTR       24981863
chr17:33595440-33595441(+) m6A 3'UTR       24981863
chr17:33596511-33596512(+) m6A 3'UTR       24981863
chr17:33596547-33596548(+) m6A 3'UTR       24981863
chr17:33596618-33596619(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548j-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SLFN5
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548j-5p
Interactor2: SLFN5

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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