Detail Information

Basic Information:


  VIRBase ID:  

HHID00069405

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548j-5p:           CPNE8:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548j-5p CPNE8
miRBase
Accession/Entrez ID		 MIMAT0005875 144402
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548j-5p
rs1210209539 chr22:26555275    C/T
rs545900525 chr22:26555280    G/C
rs565141718 chr22:26555283    C/A
rs565141718 chr22:26555283    C/G
rs565141718 chr22:26555283    C/T
rs751780445 chr22:26555284    G/A
rs753744163 chr22:26555282    C/A
rs757533254 chr22:26555285    C/A
rs367750295 chr22:26555290    A/G
rs976434292 chr22:26555292    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CPNE8
chr12:39095392(-) A-I      intronic
chr12:39085975(-) A-I      intronic
chr12:39221534(-) A-I      intronic
chr12:39156865(-) A-I      intronic
chr12:39156840(-) A-I      intronic
chr12:39156834(-) A-I      intronic
chr12:39212316(-) A-I      intronic
chr12:39212329(-) A-I      intronic
chr12:39212334(-) A-I      intronic
chr12:39212344(-) A-I      intronic
chr12:39156831(-) A-I      intronic
chr12:39156830(-) A-I      intronic
chr12:39212346(-) A-I      intronic
chr12:39212351(-) A-I      intronic
chr12:39090786(-) A-I      intronic
chr12:39212350(-) A-I      intronic
chr12:39090767(-) A-I      intronic
chr12:39090749(-) A-I      intronic
chr12:39212370(-) A-I      intronic
chr12:39090740(-) A-I      intronic
chr12:39061780(-) A-I      intronic
chr12:39061710(-) A-I      intronic
chr12:39086727(-) A-I      intronic
chr12:39212288(-) A-I      intronic
chr12:39212293(-) A-I      intronic
chr12:39212311(-) A-I      intronic
chr12:39212368(-) A-I      intronic
chr12:39095533(-) A-I      intronic
chr12:39227547(-) A-I      intronic
chr12:39265727(-) A-I      intronic
chr12:39213445(-) A-I      intronic
chr12:39211662(-) A-I      intronic
chr12:39211626(-) A-I      intronic
chr12:39211580(-) A-I      intronic
chr12:39211564(-) A-I      intronic
chr12:39211558(-) A-I      intronic
chr12:39265746(-) A-I      intronic
chr12:39149785(-) A-I      intronic
chr12:39205640(-) A-I      intronic
chr12:39265893(-) A-I      intronic
chr12:39205630(-) A-I      intronic
chr12:39294806(-) A-I      intronic
chr12:39294831(-) A-I      intronic
chr12:39095566(-) A-I      intronic
chr12:39294879(-) A-I      intronic
chr12:39294960(-) A-I      intronic
chr12:39095538(-) A-I      intronic
chr12:39095528(-) A-I      intronic
chr12:39205612(-) A-I      intronic
chr12:39095434(-) A-I      intronic
chr12:39227448(-) A-I      intronic
chr12:39061605(-) A-I      intronic
chr12:39176690(-) A-I      intronic
chr12:39227445(-) A-I      intronic
chr12:39227409(-) A-I      intronic
chr12:39227118(-) A-I      intronic
chr12:39149779(-) A-I      intronic
chr12:39061652(-) A-I      intronic
chr12:39260881(-) A-I      intronic
chr12:39061724(-) A-I      intronic
chr12:39227047(-) A-I      intronic
chr12:39061796(-) A-I      intronic
chr12:39227043(-) A-I      intronic
chr12:39176596(-) A-I      intronic
chr12:39265741(-) A-I      intronic
chr12:39061827(-) A-I      intronic
chr12:39158175(-) A-I      intronic
chr12:39090630(-) A-I      intronic
chr12:39095398(-) A-I      intronic
chr12:39095407(-) A-I      intronic
chr12:39227033(-) A-I      intronic
chr12:39158177(-) A-I      intronic
chr12:39213482(-) A-I      intronic
chr12:39213380(-) A-I      intronic
chr12:39090802(-) A-I      intronic
chr12:39150320(-) A-I      intronic
chr12:39156905(-) A-I      intronic
chr12:39156746(-) A-I      intronic
chr12:39208257(-) A-I      intronic
chr12:39095363(-) A-I      intronic
chr12:39213385(-) A-I      intronic
chr12:39298435(-) A-I      intronic
chr12:39213457(-) A-I      intronic
chr12:39085991(-) A-I      intronic
chr12:39095569(-) A-I      intronic
chr12:39213447(-) A-I      intronic
chr12:39213469(-) A-I      intronic
chr12:39213405(-) A-I      intronic
chr12:39089707(-) A-I      intronic
chr12:39156761(-) A-I      intronic
chr12:39156729(-) A-I      intronic
chr12:39213485(-) A-I      intronic
chr12:39213512(-) A-I      intronic
chr12:39213506(-) A-I      intronic
chr12:39208344(-) A-I      intronic
chr12:39089685(-) A-I      intronic
chr12:39062865(-) A-I      intronic
chr12:39095420(-) A-I      intronic
chr12:39208275(-) A-I      intronic
chr12:39213402(-) A-I      intronic
chr12:39213538(-) A-I      intronic
chr12:39227102(-) A-I      intronic
chr12:39061738(-) A-I      intronic
chr12:39213388(-) A-I      intronic
chr12:39213567(-) A-I      intronic
chr12:39081456(-) A-I      intronic
chr12:39090727(-) A-I      intronic
chr12:39090680(-) A-I      intronic
chr12:39086053(-) A-I      intronic
chr12:39208283(-) A-I      intronic
chr12:39062662(-) A-I      intronic
chr12:39265679(-) A-I      intronic
chr12:39095374(-) A-I      intronic
chr12:39205558(-) A-I      intronic
chr12:39227464(-) A-I      intronic
chr12:39095478(-) A-I      intronic
chr12:39090813(-) A-I      intronic
chr12:39095484(-) A-I      intronic
chr12:39090681(-) A-I      intronic
chr12:39208216(-) A-I      intronic
chr12:39095424(-) A-I      intronic
chr12:39090590(-) A-I      intronic
chr12:39208215(-) A-I      intronic
chr12:39150294(-) A-I      intronic
chr12:39086085(-) A-I      intronic
chr12:39095568(-) A-I      intronic
chr12:39090755(-) A-I      intronic
chr12:39089737(-) A-I      intronic
chr12:39062744(-) A-I      intronic
chr12:39090797(-) A-I      intronic
chr12:39061728(-) A-I      intronic
chr12:39156864(-) A-I      intronic
chr12:39090741(-) A-I      intronic
chr12:39090617(-) A-I      intronic
chr12:39090621(-) A-I      intronic
chr12:39213325(-) A-I      intronic
chr12:39211600(-) A-I      intronic
chr12:39090787(-) A-I      intronic
chr12:39150340(-) A-I      intronic
chr12:39061804(-) A-I      intronic
chr12:39090602(-) A-I      intronic
chr12:39061805(-) A-I      intronic
chr12:39089619(-) A-I      intronic
chr12:39227553(-) A-I      intronic
chr12:39095456(-) A-I      intronic
chr12:39103493(-) A-I      intronic
chr12:39095348(-) A-I      intronic
chr12:39095364(-) A-I      intronic
chr12:39090629(-) A-I      intronic
chr12:39205474(-) A-I      intronic
chr12:39240364(-) A-I      intronic
chr12:39061794(-) A-I      intronic
chr12:39214309(-) A-I      intronic
chr12:39090656(-) A-I      intronic
chr12:39062734(-) A-I      intronic
chr12:39090867(-) A-I      intronic
chr12:39061819(-) A-I      intronic
chr12:39227007(-) A-I      intronic
chr12:39150197(-) A-I      intronic
chr12:39090675(-) A-I      intronic
chr12:39150263(-) A-I      intronic
chr12:39086039(-) A-I      intronic
chr12:39206236(-) A-I      intronic
chr12:39090766(-) A-I      intronic
chr12:39061737(-) A-I      intronic
chr12:39095381(-) A-I      intronic
chr12:39147097(-) A-I      intronic
chr12:39205622(-) A-I      intronic
chr12:39089601(-) A-I      intronic
chr12:39061667(-) A-I      intronic
chr12:39048309(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CPNE8
chr12:39208283(-) A-I intron -    22327324
chr12:39213380(-) A-I intron -    22028664
chr12:39213385(-) A-I intron -    22028664
chr12:39213388(-) A-I intron -    22028664
chr12:39213402(-) A-I intron -    22028664
chr12:39213405(-) A-I intron -    22028664
chr12:39213447(-) A-I intron -    22028664
chr12:39213457(-) A-I intron -    22028664
chr12:39213482(-) A-I intron -    22028664
chr12:39213485(-) A-I intron -    22028664
chr12:39213506(-) A-I intron -    22028664
chr12:39213512(-) A-I intron -    22028664
chr12:39213538(-) A-I intron -    22028664
chr12:39213567(-) A-I intron -    22028664
chr12:39206236(-) A-G intron -    22484847
chr12:39090602(-) A-G intron -    22484847
chr12:39090629(-) A-G intron -    22484847
chr12:39090680(-) A-G intron -    22484847
chr12:39090681(-) A-G intron -    22484847
chr12:39208283(-) A-G intron -    22484847
chr12:39061729(-) T-C intron -    22484847
chr12:39061737(-) A-G intron -    22484847
chr12:39061794(-) A-G intron -    22484847
chr12:39061804(-) A-G intron -    22484847
chr12:39061805(-) A-G intron -    22484847
chr12:39061819(-) A-G intron -    22484847
chr12:39062734(-) A-G intron -    22484847
chr12:39062744(-) A-G intron -    22484847
chr12:39085923(-) T-C intron -    22484847
chr12:39089497(-) G-A intron -    22484847
chr12:39089601(-) A-G intron -    22484847
chr12:39090590(-) A-G intron -    22484847
chr12:39090621(-) A-G intron -    22484847
chr12:39090656(-) A-G intron -    22484847
chr12:39090755(-) A-G intron -    22484847
chr12:39090766(-) A-G intron -    22484847
chr12:39090797(-) A-G intron -    22484847
chr12:39090802(-) A-G intron -    22484847
chr12:39090813(-) A-G intron -    22484847
chr12:39090867(-) A-G intron -    22484847
chr12:39095348(-) A-G intron -    22484847
chr12:39095364(-) A-G intron -    22484847
chr12:39095374(-) A-G intron -    22484847
chr12:39095420(-) A-G intron -    22484847
chr12:39095424(-) A-G intron -    22484847
chr12:39095478(-) A-G intron -    22484847
chr12:39095484(-) A-G intron -    22484847
chr12:39095568(-) A-G intron -    22484847
chr12:39095569(-) A-G intron -    22484847
chr12:39150340(-) A-G intron -    22484847
chr12:39156729(-) A-G intron -    22484847
chr12:39156746(-) A-G intron -    22484847
chr12:39156761(-) A-G intron -    22484847
chr12:39156905(-) A-G intron -    22484847
chr12:39205558(-) A-G intron -    22484847
chr12:39205622(-) A-G intron -    22484847
chr12:39208275(-) A-G intron -    22484847
chr12:39227171(-) T-C intron -    22484847
chr12:39227464(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CPNE8
chr12:39045988-39045989(-) m6A 3'UTR//intron       27773535
chr12:39046026-39046027(-) m6A 3'UTR//intron       27773535
chr12:39299292-39299293(-) m6A CDS//intron       24981863
chr12:39299298-39299299(-) m6A CDS//intron       24981863
chr12:39299331-39299332(-) m6A CDS//intron       24981863
chr12:39299361-39299362(-) m6A 5'UTR//intron       24981863//22608085
chr12:39300005-39300006(-) m6A 5'UTR//intron       24284625//25456834//22608085
chr12:39300010-39300011(-) m6A 5'UTR//intron       24284625//25456834//22608085
chr12:39301130-39301131(-) m6A CDS       24284625//25456834//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548j-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CPNE8
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548j-5p
Interactor2: CPNE8

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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