Detail Information

Basic Information:


  VIRBase ID:  

HHID00069401

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548j-5p:           CD200R1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548j-5p CD200R1
miRBase
Accession/Entrez ID		 MIMAT0005875 131450
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD200R//HCRTR2//MOX2R//OX2R

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548j-5p
rs1210209539 chr22:26555275    C/T
rs545900525 chr22:26555280    G/C
rs565141718 chr22:26555283    C/A
rs565141718 chr22:26555283    C/G
rs565141718 chr22:26555283    C/T
rs751780445 chr22:26555284    G/A
rs753744163 chr22:26555282    C/A
rs757533254 chr22:26555285    C/A
rs367750295 chr22:26555290    A/G
rs976434292 chr22:26555292    T/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CD200R1
chr3:112642399-112642400(-) m6A 3'UTR       -
chr3:112642437-112642438(-) m6A 3'UTR       -
chr3:112642498-112642499(-) m6A 3'UTR       -
chr3:112642514-112642515(-) m6A 3'UTR       -
chr3:112642539-112642540(-) m6A 3'UTR//CDS       -
chr3:112642584-112642585(-) m6A 3'UTR//CDS       -
chr3:112642608-112642609(-) m6A 3'UTR//CDS       -
chr3:112693709-112693710(-) m6A 5'UTR       -
chr3:112693877-112693878(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548j-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CD200R1
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548j-5p
Interactor2: CD200R1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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