Detail Information

Basic Information:


  VIRBase ID:  

HHID00069399

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548j-5p:           DCUN1D3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548j-5p DCUN1D3
miRBase
Accession/Entrez ID		 MIMAT0005875 123879
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - 44M2.4//DCNL3//SCCRO3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548j-5p
rs1210209539 chr22:26555275    C/T
rs545900525 chr22:26555280    G/C
rs565141718 chr22:26555283    C/A
rs565141718 chr22:26555283    C/G
rs565141718 chr22:26555283    C/T
rs751780445 chr22:26555284    G/A
rs753744163 chr22:26555282    C/A
rs757533254 chr22:26555285    C/A
rs367750295 chr22:26555290    A/G
rs976434292 chr22:26555292    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DCUN1D3
chr16:20901823(-) A-I      intronic
chr16:20901732(-) A-I      intronic
chr16:20900051(-) A-I      intronic
chr16:20900036(-) A-I      intronic
chr16:20900010(-) A-I      intronic
chr16:20899993(-) A-I      intronic
chr16:20899883(-) A-I      intronic
chr16:20898500(-) A-I      intronic
chr16:20898496(-) A-I      intronic
chr16:20898489(-) A-I      intronic
chr16:20898392(-) A-I      intronic
chr16:20896586(-) A-I      intronic
chr16:20896577(-) A-I      intronic
chr16:20896457(-) A-I      intronic
chr16:20894723(-) A-I      intronic
chr16:20894645(-) A-I      intronic
chr16:20905423(-) A-I      intronic
chr16:20905425(-) A-I      intronic
chr16:20905426(-) A-I      intronic
chr16:20905508(-) A-I      intronic
chr16:20906509(-) A-I      intronic
chr16:20906513(-) A-I      intronic
chr16:20906514(-) A-I      intronic
chr16:20906532(-) A-I      intronic
chr16:20906533(-) A-I      intronic
chr16:20906621(-) A-I      intronic
chr16:20900700(-) A-I      intronic
chr16:20904587(-) A-I      intronic
chr16:20902529(-) A-I      intronic
chr16:20902519(-) A-I      intronic
chr16:20902517(-) A-I      intronic
chr16:20902486(-) A-I      intronic
chr16:20904597(-) A-I      intronic
chr16:20902480(-) A-I      intronic
chr16:20902464(-) A-I      intronic
chr16:20894711(-) A-I      intronic
chr16:20874806(-) A-I      intronic
chr16:20887561(-) A-I      intronic
chr16:20898622(-) A-I      intronic
chr16:20901899(-) A-I      intronic
chr16:20899869(-) A-I      intronic
chr16:20901843(-) A-I      intronic
chr16:20896570(-) A-I      intronic
chr16:20892685(-) A-I      intronic
chr16:20904633(-) A-I      intronic
chr16:20894670(-) A-I      intronic
chr16:20892666(-) A-I      intronic
chr16:20899870(-) A-I      intronic
chr16:20900293(-) A-I      intronic
chr16:20889234(-) A-I      intronic
chr16:20905481(-) A-I      intronic
chr16:20899833(-) A-I      intronic
chr16:20901920(-) A-I      intronic
chr16:20892643(-) A-I      intronic
chr16:20901835(-) A-I      intronic
chr16:20894667(-) A-I      intronic
chr16:20896526(-) A-I      intronic
chr16:20900165(-) A-I      intronic
chr16:20898502(-) A-I      intronic
chr16:20893276(-) A-I      intronic
chr16:20900586(-) A-I      intronic
chr16:20892629(-) A-I      intronic
chr16:20892646(-) A-I      intronic
chr16:20896533(-) A-I      intronic
chr16:20896176(-) A-I      intronic
chr16:20905478(-) A-I      intronic
chr16:20905491(-) A-I      intronic
chr16:20906709(-) A-I      intronic
chr16:20905371(-) A-I      intronic
chr16:20905515(-) A-I      intronic
chr16:20900037(-) A-I      intronic
chr16:20905386(-) A-I      intronic
chr16:20892607(-) A-I      intronic
chr16:20893262(-) A-I      intronic
chr16:20901779(-) A-I      intronic
chr16:20892723(-) A-I      intronic
chr16:20904668(-) A-I      intronic
chr16:20904669(-) A-I      intronic
chr16:20899970(-) A-I      intronic
chr16:20905468(-) A-I      intronic
chr16:20905442(-) A-I      intronic
chr16:20896524(-) A-I      intronic
chr16:20903356(-) A-I      intronic
chr16:20904745(-) A-I      intronic
chr16:20902915(-) A-I      intronic
chr16:20903361(-) A-I      intronic
chr16:20887562(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DCUN1D3
chr16:20905371(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DCUN1D3
chr16:20866830-20866831(-) m6A 3'UTR       27773535
chr16:20867151-20867152(-) m6A 3'UTR       27773535
chr16:20867183-20867184(-) m6A 3'UTR       24981863//27773535
chr16:20867217-20867218(-) m6A 3'UTR       24981863//27773535
chr16:20867249-20867250(-) m6A 3'UTR       27773535
chr16:20867255-20867256(-) m6A 3'UTR       27773535
chr16:20870977-20870978(-) m6A 3'UTR       27773535
chr16:20871142-20871143(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:20871212-20871213(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:20871391-20871392(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871400-20871401(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871430-20871431(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871445-20871446(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871457-20871458(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871475-20871476(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871492-20871493(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871547-20871548(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871600-20871601(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:20871652-20871653(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr16:20873581-20873582(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr16:20873694-20873695(-) m6A CDS       24284625//25456834//27773535//27371828//27773536//22608085
chr16:20873798-20873799(-) m6A CDS       24284625//27773535//27371828
chr16:20880289-20880290(-) m6A 5'UTR//intron       24981863
chr16:20907694-20907695(-) m6A intron       24981863
chr16:20911539-20911540(-) m6A 5'UTR       25456834//24981863
chr16:20911584-20911585(-) m6A 5'UTR       24209618//25456834//24981863
chr16:20911647-20911648(-) m1A 5'UTR       26863196//26863410

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548j-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
DCUN1D3
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548j-5p
Interactor2: DCUN1D3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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