Detail Information

Basic Information:


  VIRBase ID:  

HHID00069393

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548j-5p:           MIDEAS:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548j-5p MIDEAS
miRBase
Accession/Entrez ID		 MIMAT0005875 91748
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - c14_5541//C14orf117//C14orf43//ELMSAN1//LSR68

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548j-5p
rs1210209539 chr22:26555275    C/T
rs545900525 chr22:26555280    G/C
rs565141718 chr22:26555283    C/A
rs565141718 chr22:26555283    C/G
rs565141718 chr22:26555283    C/T
rs751780445 chr22:26555284    G/A
rs753744163 chr22:26555282    C/A
rs757533254 chr22:26555285    C/A
rs367750295 chr22:26555290    A/G
rs976434292 chr22:26555292    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MIDEAS
chr14:74245116(-) A-I      intronic
chr14:74230950(-) A-I      intronic
chr14:74230943(-) A-I      intronic
chr14:74230961(-) A-I      intronic
chr14:74197604(-) A-I      intronic
chr14:74249252(-) A-I      intronic
chr14:74200852(-) A-I      intronic
chr14:74233528(-) A-I      intronic
chr14:74197578(-) A-I      intronic
chr14:74234780(-) A-I      intronic
chr14:74204623(-) A-I      intronic
chr14:74197513(-) A-I      intronic
chr14:74199673(-) A-I      intronic
chr14:74245907(-) A-I      intronic
chr14:74200216(-) A-I      intronic
chr14:74199323(-) A-I      intronic
chr14:74200259(-) A-I      intronic
chr14:74233766(-) A-I      intronic
chr14:74200535(-) A-I      intronic
chr14:74233417(-) A-I      intronic
chr14:74204674(-) A-I      intronic
chr14:74200522(-) A-I      intronic
chr14:74234137(-) A-I      intronic
chr14:74239814(-) A-I      intronic
chr14:74239709(-) A-I      intronic
chr14:74235460(-) A-I      intronic
chr14:74200891(-) A-I      intronic
chr14:74231012(-) A-I      intronic
chr14:74236402(-) A-I      intronic
chr14:74199743(-) A-I      intronic
chr14:74233733(-) A-I      intronic
chr14:74199611(-) A-I      intronic
chr14:74199403(-) A-I      intronic
chr14:74199407(-) A-I      intronic
chr14:74200125(-) A-I      intronic
chr14:74204762(-) A-I      intronic
chr14:74204936(-) A-I      intronic
chr14:74217826(-) A-I      intronic
chr14:74245855(-) A-I      intronic
chr14:74245843(-) A-I      intronic
chr14:74230871(-) A-I      intronic
chr14:74234255(-) A-I      intronic
chr14:74200551(-) A-I      intronic
chr14:74240649(-) A-I      intronic
chr14:74200554(-) A-I      intronic
chr14:74233275(-) A-I      intronic
chr14:74235355(-) A-I      intronic
chr14:74197499(-) A-I      intronic
chr14:74240509(-) A-I      intronic
chr14:74233291(-) A-I      intronic
chr14:74235352(-) A-I      intronic
chr14:74197617(-) A-I      intronic
chr14:74243142(-) A-I      intronic
chr14:74240491(-) A-I      intronic
chr14:74234864(-) A-I      intronic
chr14:74200513(-) A-I      intronic
chr14:74200518(-) A-I      intronic
chr14:74199237(-) A-I      intronic
chr14:74200108(-) A-I      intronic
chr14:74239820(-) A-I      intronic
chr14:74245976(-) A-I      intronic
chr14:74248648(-) A-I      intronic
chr14:74201430(-) A-I      intronic
chr14:74234741(-) A-I      intronic
chr14:74248577(-) A-I      intronic
chr14:74248432(-) A-I      intronic
chr14:74234679(-) A-I      intronic
chr14:74248430(-) A-I      intronic
chr14:74234670(-) A-I      intronic
chr14:74248354(-) A-I      intronic
chr14:74200180(-) A-I      intronic
chr14:74245827(-) A-I      intronic
chr14:74246743(-) A-I      intronic
chr14:74234641(-) A-I      intronic
chr14:74234229(-) A-I      intronic
chr14:74234167(-) A-I      intronic
chr14:74234171(-) A-I      intronic
chr14:74233746(-) A-I      intronic
chr14:74200240(-) A-I      intronic
chr14:74204622(-) A-I      intronic
chr14:74233697(-) A-I      intronic
chr14:74233670(-) A-I      intronic
chr14:74233661(-) A-I      intronic
chr14:74246724(-) A-I      intronic
chr14:74233434(-) A-I      intronic
chr14:74246714(-) A-I      intronic
chr14:74246611(-) A-I      intronic
chr14:74249305(-) A-I      intronic
chr14:74245918(-) A-I      intronic
chr14:74235284(-) A-I      intronic
chr14:74197420(-) A-I      intronic
chr14:74245833(-) A-I      intronic
chr14:74230921(-) A-I      intronic
chr14:74246850(-) A-I      intronic
chr14:74205000(-) A-I      intronic
chr14:74246849(-) A-I      intronic
chr14:74199406(-) A-I      intronic
chr14:74245927(-) A-I      intronic
chr14:74199367(-) A-I      intronic
chr14:74233253(-) A-I      intronic
chr14:74234219(-) A-I      intronic
chr14:74204685(-) A-I      intronic
chr14:74210731(-) A-I      intronic
chr14:74246782(-) A-I      intronic
chr14:74205017(-) A-I      intronic
chr14:74234093(-) A-I      intronic
chr14:74190085(-) A-I      intronic
chr14:74200046(-) A-I      intronic
chr14:74240613(-) A-I      intronic
chr14:74234776(-) A-I      intronic
chr14:74204782(-) A-I      intronic
chr14:74233696(-) A-I      intronic
chr14:74200192(-) A-I      intronic
chr14:74201399(-) A-I      intronic
chr14:74234241(-) A-I      intronic
chr14:74197630(-) A-I      intronic
chr14:74246089(-) A-I      intronic
chr14:74234335(-) A-I      intronic
chr14:74235270(-) A-I      intronic
chr14:74230855(-) A-I      intronic
chr14:74248246(-) A-I      intronic
chr14:74200562(-) A-I      intronic
chr14:74201385(-) A-I      intronic
chr14:74245181(-) A-I      intronic
chr14:74218503(-) A-I      intronic
chr14:74217754(-) A-I      intronic
chr14:74245974(-) A-I      intronic
chr14:74233655(-) A-I      intronic
chr14:74234715(-) A-I      intronic
chr14:74248325(-) A-I      intronic
chr14:74246051(-) A-I      intronic
chr14:74197539(-) A-I      intronic
chr14:74200597(-) A-I      intronic
chr14:74200677(-) A-I      intronic
chr14:74246605(-) A-I      intronic
chr14:74240603(-) A-I      intronic
chr14:74233458(-) A-I      intronic
chr14:74200170(-) A-I      intronic
chr14:74233527(-) A-I      intronic
chr14:74231007(-) A-I      intronic
chr14:74248593(-) A-I      intronic
chr14:74246673(-) A-I      intronic
chr14:74230960(-) A-I      intronic
chr14:74202609(-) A-I      intronic
chr14:74249195(-) A-I      intronic
chr14:74234258(-) A-I      intronic
chr14:74204561(-) A-I      intronic
chr14:74234246(-) A-I      intronic
chr14:74233735(-) A-I      intronic
chr14:74249270(-) A-I      intronic
chr14:74246047(-) A-I      intronic
chr14:74249260(-) A-I      intronic
chr14:74243141(-) A-I      intronic
chr14:74234094(-) A-I      intronic
chr14:74234806(-) A-I      intronic
chr14:74234254(-) A-I      intronic
chr14:74233448(-) A-I      intronic
chr14:74201407(-) A-I      intronic
chr14:74201361(-) A-I      intronic
chr14:74234259(-) A-I      intronic
chr14:74189968(-) A-I      intronic
chr14:74246648(-) A-I      intronic
chr14:74204738(-) A-I      intronic
chr14:74246641(-) A-I      intronic
chr14:74233656(-) A-I      intronic
chr14:74246672(-) A-I      intronic
chr14:74240563(-) A-I      intronic
chr14:74245970(-) A-I      intronic
chr14:74199321(-) A-I      intronic
chr14:74189857(-) A-I      intronic
chr14:74233830(-) A-I      intronic
chr14:74239679(-) A-I      intronic
chr14:74230957(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548j-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
MIDEAS
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548j-5p
Interactor2: MIDEAS

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...