Detail Information

Basic Information:


  VIRBase ID:  

HHID00069189

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548j-5p:           STRN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548j-5p STRN
miRBase
Accession/Entrez ID		 MIMAT0005875 6801
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - PPP2R6A//SG2NA//STRN1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548j-5p
rs1210209539 chr22:26555275    C/T
rs545900525 chr22:26555280    G/C
rs565141718 chr22:26555283    C/A
rs565141718 chr22:26555283    C/G
rs565141718 chr22:26555283    C/T
rs751780445 chr22:26555284    G/A
rs753744163 chr22:26555282    C/A
rs757533254 chr22:26555285    C/A
rs367750295 chr22:26555290    A/G
rs976434292 chr22:26555292    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STRN
chr2:37185236(-) A-I      intronic
chr2:37185234(-) A-I      intronic
chr2:37127250(-) A-I      intronic
chr2:37127236(-) A-I      intronic
chr2:37127208(-) A-I      intronic
chr2:37127200(-) A-I      intronic
chr2:37102418(-) A-I      intronic
chr2:37127199(-) A-I      intronic
chr2:37127178(-) A-I      intronic
chr2:37185256(-) A-I      intronic
chr2:37185238(-) A-I      intronic
chr2:37181543(-) A-I      intronic
chr2:37181482(-) A-I      intronic
chr2:37169976(-) A-I      intronic
chr2:37169963(-) A-I      intronic
chr2:37169926(-) A-I      intronic
chr2:37167917(-) A-I      intronic
chr2:37167858(-) A-I      intronic
chr2:37167856(-) A-I      intronic
chr2:37167803(-) A-I      intronic
chr2:37165486(-) A-I      intronic
chr2:37165323(-) A-I      intronic
chr2:37159214(-) A-I      intronic
chr2:37159206(-) A-I      intronic
chr2:37157489(-) A-I      intronic
chr2:37141297(-) A-I      intronic
chr2:37132325(-) A-I      intronic
chr2:37132313(-) A-I      intronic
chr2:37131889(-) A-I      intronic
chr2:37128578(-) A-I      intronic
chr2:37128573(-) A-I      intronic
chr2:37127953(-) A-I      intronic
chr2:37127936(-) A-I      intronic
chr2:37127888(-) A-I      intronic
chr2:37127775(-) A-I      intronic
chr2:37127310(-) A-I      intronic
chr2:37127233(-) A-I      intronic
chr2:37186215(-) A-I      intronic
chr2:37185227(-) A-I      intronic
chr2:37185211(-) A-I      intronic
chr2:37185155(-) A-I      intronic
chr2:37184655(-) A-I      intronic
chr2:37184539(-) A-I      intronic
chr2:37184486(-) A-I      intronic
chr2:37127214(-) A-I      intronic
chr2:37127201(-) A-I      intronic
chr2:37127146(-) A-I      intronic
chr2:37124775(-) A-I      intronic
chr2:37124735(-) A-I      intronic
chr2:37124726(-) A-I      intronic
chr2:37124711(-) A-I      intronic
chr2:37124644(-) A-I      intronic
chr2:37124263(-) A-I      intronic
chr2:37124258(-) A-I      intronic
chr2:37124223(-) A-I      intronic
chr2:37124210(-) A-I      intronic
chr2:37124198(-) A-I      intronic
chr2:37122394(-) A-I      intronic
chr2:37118504(-) A-I      intronic
chr2:37118498(-) A-I      intronic
chr2:37118425(-) A-I      intronic
chr2:37117899(-) A-I      intronic
chr2:37117815(-) A-I      intronic
chr2:37117783(-) A-I      intronic
chr2:37093477(-) A-I      intronic
chr2:37094399(-) A-I      intronic
chr2:37094459(-) A-I      intronic
chr2:37100650(-) A-I      intronic
chr2:37100665(-) A-I      intronic
chr2:37100697(-) A-I      intronic
chr2:37101209(-) A-I      intronic
chr2:37102396(-) A-I      intronic
chr2:37103164(-) A-I      intronic
chr2:37103191(-) A-I      intronic
chr2:37103229(-) A-I      intronic
chr2:37103291(-) A-I      intronic
chr2:37103376(-) A-I      intronic
chr2:37103392(-) A-I      intronic
chr2:37105931(-) A-I      intronic
chr2:37107271(-) A-I      intronic
chr2:37107377(-) A-I      intronic
chr2:37107378(-) A-I      intronic
chr2:37107383(-) A-I      intronic
chr2:37107399(-) A-I      intronic
chr2:37108543(-) A-I      intronic
chr2:37109947(-) A-I      intronic
chr2:37109969(-) A-I      intronic
chr2:37114491(-) A-I      intronic
chr2:37127193(-) A-I      intronic
chr2:37117738(-) A-I      intronic
chr2:37184470(-) A-I      intronic
chr2:37181603(-) A-I      intronic
chr2:37181573(-) A-I      intronic
chr2:37181572(-) A-I      intronic
chr2:37181571(-) A-I      intronic
chr2:37181569(-) A-I      intronic
chr2:37181546(-) A-I      intronic
chr2:37118637(-) A-I      intronic
chr2:37084349(-) A-I      intronic
chr2:37103289(-) A-I      intronic
chr2:37141333(-) A-I      intronic
chr2:37124297(-) A-I      intronic
chr2:37185031(-) A-I      intronic
chr2:37182054(-) A-I      intronic
chr2:37185330(-) A-I      intronic
chr2:37131849(-) A-I      intronic
chr2:37127202(-) A-I      intronic
chr2:37189828(-) A-I      intronic
chr2:37127313(-) A-I      intronic
chr2:37117755(-) A-I      intronic
chr2:37168294(-) A-I      intronic
chr2:37181990(-) A-I      intronic
chr2:37108490(-) A-I      intronic
chr2:37175334(-) A-I      intronic
chr2:37181869(-) A-I      intronic
chr2:37127132(-) A-I      intronic
chr2:37186028(-) A-I      intronic
chr2:37182055(-) A-I      intronic
chr2:37127319(-) A-I      intronic
chr2:37124859(-) A-I      intronic
chr2:37151221(-) A-I      intronic
chr2:37107275(-) A-I      intronic
chr2:37132315(-) A-I      intronic
chr2:37154543(-) A-I      intronic
chr2:37185241(-) A-I      intronic
chr2:37118582(-) A-I      intronic
chr2:37127305(-) A-I      intronic
chr2:37124054(-) A-I      intronic
chr2:37109796(-) A-I      intronic
chr2:37161176(-) A-I      intronic
chr2:37093482(-) A-I      intronic
chr2:37165533(-) A-I      intronic
chr2:37093356(-) A-I      intronic
chr2:37124188(-) A-I      intronic
chr2:37101369(-) A-I      intronic
chr2:37132398(-) A-I      intronic
chr2:37103177(-) A-I      intronic
chr2:37184514(-) A-I      intronic
chr2:37107028(-) A-I      intronic
chr2:37128537(-) A-I      intronic
chr2:37123004(-) A-I      intronic
chr2:37181568(-) A-I      intronic
chr2:37109666(-) A-I      intronic
chr2:37110581(-) A-I      intronic
chr2:37107207(-) A-I      intronic
chr2:37118413(-) A-I      intronic
chr2:37154528(-) A-I      intronic
chr2:37103362(-) A-I      intronic
chr2:37127252(-) A-I      intronic
chr2:37185281(-) A-I      intronic
chr2:37109692(-) A-I      intronic
chr2:37127259(-) A-I      intronic
chr2:37134511(-) A-I      intronic
chr2:37181918(-) A-I      intronic
chr2:37094366(-) A-I      intronic
chr2:37127973(-) A-I      intronic
chr2:37104897(-) A-I      intronic
chr2:37156630(-) A-I      intronic
chr2:37184513(-) A-I      intronic
chr2:37127170(-) A-I      intronic
chr2:37092976(-) A-I      intronic
chr2:37127919(-) A-I      intronic
chr2:37185245(-) A-I      intronic
chr2:37094360(-) A-I      intronic
chr2:37100964(-) A-I      intronic
chr2:37127235(-) A-I      intronic
chr2:37100694(-) A-I      intronic
chr2:37124067(-) A-I      intronic
chr2:37101345(-) A-I      intronic
chr2:37141329(-) A-I      intronic
chr2:37127879(-) A-I      intronic
chr2:37127207(-) A-I      intronic
chr2:37109855(-) A-I      intronic
chr2:37127100(-) A-I      intronic
chr2:37103301(-) A-I      intronic
chr2:37124871(-) A-I      intronic
chr2:37189820(-) A-I      intronic
chr2:37127138(-) A-I      intronic
chr2:37109849(-) A-I      intronic
chr2:37181533(-) A-I      intronic
chr2:37107454(-) A-I      intronic
chr2:37108444(-) A-I      intronic
chr2:37117900(-) A-I      intronic
chr2:37101344(-) A-I      intronic
chr2:37132251(-) A-I      intronic
chr2:37175307(-) A-I      intronic
chr2:37128528(-) A-I      intronic
chr2:37107466(-) A-I      intronic
chr2:37127164(-) A-I      intronic
chr2:37159160(-) A-I      intronic
chr2:37132250(-) A-I      intronic
chr2:37102867(-) A-I      intronic
chr2:37118621(-) A-I      intronic
chr2:37124852(-) A-I      intronic
chr2:37093483(-) A-I      intronic
chr2:37104817(-) A-I      intronic
chr2:37141366(-) A-I      intronic
chr2:37109706(-) A-I      intronic
chr2:37172646(-) A-I      intronic
chr2:37107460(-) A-I      intronic
chr2:37185200(-) A-I      intronic
chr2:37127255(-) A-I      intronic
chr2:37127870(-) A-I      intronic
chr2:37124853(-) A-I      intronic
chr2:37104180(-) A-I      intronic
chr2:37154454(-) A-I      intronic
chr2:37127095(-) A-I      intronic
chr2:37102608(-) A-I      intronic
chr2:37100969(-) A-I      intronic
chr2:37184565(-) A-I      intronic
chr2:37131859(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STRN
chr2:37127132(-) A-I intron -    21960545
chr2:37164734(-) A-I intron -    21960545
chr2:37100964(-) A-G intron -    22484847
chr2:37100969(-) A-G intron -    22484847
chr2:37101344(-) A-G intron -    22484847
chr2:37101345(-) A-G intron -    22484847
chr2:37101369(-) A-G intron -    22484847
chr2:37102608(-) A-G intron -    22484847
chr2:37103362(-) A-G intron -    22484847
chr2:37107016(-) A-G intron -    22484847
chr2:37107460(-) A-G intron -    22484847
chr2:37107466(-) A-G intron -    22484847
chr2:37107501(-) A-G intron -    22484847
chr2:37110581(-) A-G intron -    22484847
chr2:37118397(-) A-G intron -    22484847
chr2:37118413(-) A-G intron -    22484847
chr2:37118451(-) A-G intron -    22484847
chr2:37118585(-) A-G intron -    22484847
chr2:37118621(-) A-G intron -    22484847
chr2:37118637(-) A-G intron -    22484847
chr2:37124185(-) A-G intron -    22484847
chr2:37124188(-) A-G intron -    22484847
chr2:37124297(-) A-G intron -    22484847
chr2:37124703(-) G-A intron -    22484847
chr2:37124717(-) A-G intron -    22484847
chr2:37124785(-) A-G intron -    22484847
chr2:37124801(-) A-G intron -    22484847
chr2:37124859(-) A-G intron -    22484847
chr2:37124871(-) A-G intron -    22484847
chr2:37127137(-) A-G intron -    22484847
chr2:37127169(-) A-G intron -    22484847
chr2:37127170(-) A-G intron -    22484847
chr2:37127196(-) A-G intron -    22484847
chr2:37127231(-) A-G intron -    22484847
chr2:37127252(-) A-G intron -    22484847
chr2:37127311(-) A-G intron -    22484847
chr2:37127313(-) A-G intron -    22484847
chr2:37127319(-) A-G intron -    22484847
chr2:37127879(-) A-G intron -    22484847
chr2:37127914(-) A-G intron -    22484847
chr2:37127919(-) A-G intron -    22484847
chr2:37127973(-) A-G intron -    22484847
chr2:37128632(-) A-G intron -    22484847
chr2:37131778(-) A-G intron -    22484847
chr2:37132250(-) A-G intron -    22484847
chr2:37132251(-) A-G intron -    22484847
chr2:37132315(-) A-G intron -    22484847
chr2:37132398(-) A-G intron -    22484847
chr2:37156630(-) A-G intron -    22484847
chr2:37156665(-) A-G intron -    22484847
chr2:37161176(-) A-G intron -    22484847
chr2:37165533(-) A-G intron -    22484847
chr2:37165560(-) A-G intron -    22484847
chr2:37181568(-) A-G intron -    22484847
chr2:37181869(-) A-G intron -    22484847
chr2:37181918(-) A-G intron -    22484847
chr2:37181919(-) A-G intron -    22484847
chr2:37181961(-) A-G intron -    22484847
chr2:37181990(-) A-G intron -    22484847
chr2:37182025(-) C-G intron -    22484847
chr2:37182034(-) T-C intron -    22484847
chr2:37182054(-) A-G intron -    22484847
chr2:37182073(-) A-G intron -    22484847
chr2:37184513(-) A-G intron -    22484847
chr2:37184514(-) A-G intron -    22484847
chr2:37185281(-) A-G intron -    22484847
chr2:37185333(-) A-G intron -    22484847
chr2:37185336(-) A-G intron -    22484847
chr2:37189820(-) A-G intron -    22484847
chr2:37189822(-) A-G intron -    22484847
chr2:37189823(-) A-G intron -    22484847
chr2:37189828(-) A-G intron -    22484847
chr2:37189829(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STRN
chr2:37071380-37071381(-) m6A 3'UTR       27773535
chr2:37074261-37074262(-) m6A 3'UTR       24981863//22608085
chr2:37074304-37074305(-) m6A 3'UTR       24981863//22608085
chr2:37074321-37074322(-) m6A 3'UTR       24981863//22608085
chr2:37074686-37074687(-) m6A 3'UTR       27773535
chr2:37074718-37074719(-) m6A 3'UTR       27773535
chr2:37074819-37074820(-) m6A 3'UTR       27773535
chr2:37075076-37075077(-) m6A 3'UTR       27773535
chr2:37075128-37075129(-) m6A 3'UTR       27773535
chr2:37075564-37075565(-) m6A 3'UTR       27773535
chr2:37076170-37076171(-) m6A 3'UTR       24981863//22608085
chr2:37076201-37076202(-) m6A 3'UTR       24981863//22608085
chr2:37076207-37076208(-) m6A 3'UTR       24981863//22608085
chr2:37076229-37076230(-) m6A 3'UTR       24981863//22608085
chr2:37076429-37076430(-) m6A 3'UTR       24284625//24981863//22608085
chr2:37076475-37076476(-) m6A 3'UTR       24284625//24981863//22608085
chr2:37082396-37082397(-) m6A CDS       27773535
chr2:37111162-37111163(-) m6A CDS//exon       24981863
chr2:37111201-37111202(-) m6A CDS//exon       24981863//27773535
chr2:37113898-37113899(-) m6A CDS//exon//intron       24981863//27773535
chr2:37113907-37113908(-) m6A CDS//exon//intron       24981863//27773535
chr2:37113926-37113927(-) m6A CDS//exon//intron       24981863//27773535
chr2:37113959-37113960(-) m6A CDS//exon//intron       24981863//27773535
chr2:37121049-37121050(-) m6A CDS//exon       24981863//27773535
chr2:37121078-37121079(-) m6A CDS//exon       24981863//27773535
chr2:37129917-37129918(-) m6A exon//intron       27773535
chr2:37132705-37132706(-) m6A CDS       27773535
chr2:37132724-37132725(-) m6A CDS       27773535
chr2:37132746-37132747(-) m6A CDS       27773535
chr2:37143265-37143266(-) m6A CDS       24981863//27773535
chr2:37152255-37152256(-) m6A CDS       24981863//27773535
chr2:37152299-37152300(-) m1A CDS       26863196

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548j-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
STRN
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548j-5p
Interactor2: STRN

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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