Detail Information

Basic Information:


  VIRBase ID:  

HHID00068890

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320c:           TSC22D4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320c TSC22D4
miRBase
Accession/Entrez ID		 MIMAT0005793 81628
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - THG-1//THG1//TILZ2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320c
rs1240746422 chr18:21683578    T/TAAAA
rs1280160499 chr18:21683572    A/G
rs1443511707 chr18:21683574    AGGGT/A
rs772189670 chr18:21683576    G/T
rs778052898 chr18:21683578    T/C
rs1285199699 chr18:24321732    G/A
rs1285199699 chr18:24321732    G/C
rs748073401 chr18:24321734    G/A
rs756244906 chr18:24321728    G/A
rs769415707 chr18:24321724    G/C
rs769415707 chr18:24321724    G/T
rs780317956 chr18:24321733    G/A
rs958657957 chr18:24321725    G/A
rs991776304 chr18:24321726    T/C
rs1344472820 chr18:21683563    G/A
rs748166297 chr18:21683564    C/G
rs751288880 chr18:21683557    GGAAAA/G
rs1159517960 chr18:24321717    A/G
rs1327994455 chr18:24321720    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TSC22D4
chr7:100066637(-) A-I      intronic
chr7:100066644(-) A-I      intronic
chr7:100066726(-) A-I      intronic
chr7:100066738(-) A-I      intronic
chr7:100066702(-) A-I      intronic
chr7:100066774(-) A-I      intronic
chr7:100066849(-) A-I      intronic
chr7:100066706(-) A-I      intronic
chr7:100068092(-) A-I      intronic
chr7:100069133(-) A-I      intronic
chr7:100069137(-) A-I      intronic
chr7:100068129(-) A-I      intronic
chr7:100068152(-) A-I      intronic
chr7:100068163(-) A-I      intronic
chr7:100071202(-) A-I      intronic
chr7:100071225(-) A-I      intronic
chr7:100068030(-) A-I      intronic
chr7:100066645(-) A-I      intronic
chr7:100071229(-) A-I      intronic
chr7:100069180(-) A-I      intronic
chr7:100069206(-) A-I      intronic
chr7:100069228(-) A-I      intronic
chr7:100069239(-) A-I      intronic
chr7:100068047(-) A-I      intronic
chr7:100071232(-) A-I      intronic
chr7:100069158(-) A-I      intronic
chr7:100068007(-) A-I      intronic
chr7:100071243(-) A-I      intronic
chr7:100071258(-) A-I      intronic
chr7:100069251(-) A-I      intronic
chr7:100069361(-) A-I      intronic
chr7:100071122(-) A-I      intronic
chr7:100069159(-) A-I      intronic
chr7:100071137(-) A-I      intronic
chr7:100071150(-) A-I      intronic
chr7:100071157(-) A-I      intronic
chr7:100068141(-) A-I      intronic
chr7:100066657(-) A-I      intronic
chr7:100068202(-) A-I      intronic
chr7:100066666(-) A-I      intronic
chr7:100071203(-) A-I      intronic
chr7:100066589(-) A-I      intronic
chr7:100068218(-) A-I      intronic
chr7:100068220(-) A-I      intronic
chr7:100066623(-) A-I      intronic
chr7:100066632(-) A-I      intronic
chr7:100071125(-) A-I      intronic
chr7:100066734(-) A-I      intronic
chr7:100072523(-) A-I      intronic
chr7:100068090(-) A-I      intronic
chr7:100069319(-) A-I      intronic
chr7:100068020(-) A-I      intronic
chr7:100068155(-) A-I      intronic
chr7:100068201(-) A-I      intronic
chr7:100068091(-) A-I      intronic
chr7:100067991(-) A-I      intronic
chr7:100068146(-) A-I      intronic
chr7:100066686(-) A-I      intronic
chr7:100069280(-) A-I      intronic
chr7:100067982(-) A-I      intronic
chr7:100068043(-) A-I      intronic
chr7:100072493(-) A-I      intronic
chr7:100068208(-) A-I      intronic
chr7:100068052(-) A-I      intronic
chr7:100068017(-) A-I      intronic
chr7:100068079(-) A-I      intronic
chr7:100069336(-) A-I      intronic
chr7:100062994(-) A-I      intronic
chr7:100069106(-) A-I      intronic
chr7:100067981(-) A-I      intronic
chr7:100069103(-) A-I      intronic
chr7:100069325(-) A-I      intronic
chr7:100068147(-) A-I      intronic
chr7:100069263(-) A-I      intronic
chr7:100068088(-) A-I      intronic
chr7:100066646(-) A-I      intronic
chr7:100062984(-) A-I      intronic
chr7:100069160(-) A-I      intronic
chr7:100068122(-) A-I      intronic
chr7:100068116(-) A-I      intronic
chr7:100066767(-) A-I      intronic
chr7:100069329(-) A-I      intronic
chr7:100068023(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TSC22D4
chr7:100068017(-) A-I intron -    21960545
chr7:100068088(-) A-G intron -    22484847
chr7:100068146(-) A-G intron -    22484847
chr7:100068147(-) A-G intron -    22484847
chr7:100068155(-) A-G intron -    22484847
chr7:100069160(-) A-G intron -    22484847
chr7:100069241(-) A-G intron -    22484847
chr7:100069280(-) A-G intron -    22484847
chr7:100069287(-) A-G intron -    22484847
chr7:100069319(-) A-G intron -    22484847
chr7:100069325(-) A-G intron -    22484847
chr7:100069329(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TSC22D4
chr7:100064281-100064282(-) m6A 3'UTR//intron       -
chr7:100064328-100064329(-) m6A 3'UTR//intron       24284625
chr7:100064353-100064354(-) m6A 3'UTR//intron       24284625
chr7:100064789-100064790(-) m6A CDS//intron       24284625//25456834//27371828//27773536
chr7:100065348-100065349(-) m6A CDS//intron       27773535
chr7:100065353-100065354(-) m6A CDS//intron       27773535
chr7:100071911-100071912(-) m6A CDS//exon       27773535
chr7:100071983-100071984(-) m6A CDS//exon       27773535
chr7:100074945-100074946(-) m6A 5'UTR//CDS//exon       27371828//27773536
chr7:100074976-100074977(-) m6A 5'UTR//CDS//exon       24284625//27371828//27773536
chr7:100075063-100075064(-) m6A 5'UTR//CDS//exon       24284625//25456834//28052920//27371828//27773536//22575960
chr7:100075112-100075113(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr7:100075154-100075155(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr7:100075181-100075182(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr7:100075340-100075341(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085
chr7:100075365-100075366(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085
chr7:100075608-100075609(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr7:100075663-100075664(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr7:100075785-100075786(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr7:100075883-100075884(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr7:100075922-100075923(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr7:100076451-100076452(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr7:100076476-100076477(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536
chr7:100076540-100076541(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr7:100076593-100076594(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr7:100076665-100076666(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr7:100076734-100076735(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:100076741-100076742(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:100076766-100076767(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:100076772-100076773(-) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:100076796-100076797(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr7:100076852-100076853(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320c
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Pooled sera     27278097
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Ovarian follicular fluid     22116803
Exosome Plasma     23663360
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Nasopharyngeal carcinoma cells     20498841
TSC22D4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320c
Interactor2: TSC22D4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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