Detail Information

Basic Information:


  VIRBase ID:  

HHID00068878

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320c:           GTPBP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320c GTPBP2
miRBase
Accession/Entrez ID		 MIMAT0005793 54676
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - JABELS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320c
rs1240746422 chr18:21683578    T/TAAAA
rs1280160499 chr18:21683572    A/G
rs1443511707 chr18:21683574    AGGGT/A
rs772189670 chr18:21683576    G/T
rs778052898 chr18:21683578    T/C
rs1285199699 chr18:24321732    G/A
rs1285199699 chr18:24321732    G/C
rs748073401 chr18:24321734    G/A
rs756244906 chr18:24321728    G/A
rs769415707 chr18:24321724    G/C
rs769415707 chr18:24321724    G/T
rs780317956 chr18:24321733    G/A
rs958657957 chr18:24321725    G/A
rs991776304 chr18:24321726    T/C
rs1344472820 chr18:21683563    G/A
rs748166297 chr18:21683564    C/G
rs751288880 chr18:21683557    GGAAAA/G
rs1159517960 chr18:24321717    A/G
rs1327994455 chr18:24321720    G/A

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GTPBP2
chr6:43590898(-) G-T intron -    22484847
chr6:43590986(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GTPBP2
chr6:43588338-43588339(-) m6A 3'UTR//exon//intron       24209618//25456834//24981863//27773535
chr6:43588377-43588378(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr6:43588428-43588429(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr6:43588480-43588481(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535
chr6:43588540-43588541(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535
chr6:43588823-43588824(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr6:43588892-43588893(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr6:43589024-43589025(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:43589097-43589098(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:43589151-43589152(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr6:43589190-43589191(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr6:43589334-43589335(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085
chr6:43589349-43589350(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085
chr6:43589446-43589447(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr6:43589476-43589477(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr6:43589514-43589515(-) m6A 3'UTR//CDS//exon       24284625//25456834//27773535//27371828//22608085
chr6:43589525-43589526(-) m6A 3'UTR//CDS//exon       24284625//25456834//27773535//27371828//22608085
chr6:43589569-43589570(-) m6A 3'UTR//intron       24981863//27773535//27371828
chr6:43589640-43589641(-) m6A CDS//intron       24981863//27773535
chr6:43589667-43589668(-) m6A CDS//intron       24981863//27773535
chr6:43589678-43589679(-) m6A CDS//intron       24981863//27773535
chr6:43589729-43589730(-) m6A CDS//intron       27773535
chr6:43591214-43591215(-) m6A exon//intron       27773535
chr6:43591287-43591288(-) m6A exon//intron       27773535
chr6:43591696-43591697(-) m6A CDS//exon       24284625//27773535
chr6:43591757-43591758(-) m6A CDS//exon       24284625//27773535
chr6:43592361-43592362(-) m6A CDS//exon       24284625//27773535
chr6:43592376-43592377(-) m6A CDS//exon       24284625//27773535
chr6:43592449-43592450(-) m6A CDS//exon       24284625//27773535
chr6:43592774-43592775(-) m6A CDS//exon       24284625//24209618//27773535
chr6:43592966-43592967(-) m6A exon//intron       24981863//27773535//22608085
chr6:43592973-43592974(-) m6A exon//intron       24981863//27773535//22608085
chr6:43593009-43593010(-) m6A exon//intron       24981863//27773535//22608085
chr6:43593035-43593036(-) m6A exon//intron       24981863//27773535//27371828//22608085
chr6:43593065-43593066(-) m6A exon//intron       24284625//24981863//27773535//27371828//22608085
chr6:43593080-43593081(-) m6A exon//intron       24284625//24981863//27773535//27371828
chr6:43593146-43593147(-) m6A CDS//exon       27773535//27371828//27773536
chr6:43593211-43593212(-) m6A CDS//exon       27773535//27773536
chr6:43593259-43593260(-) m6A CDS//exon       27773535//27773536
chr6:43593289-43593290(-) m6A CDS//exon       27773535//27773536
chr6:43593589-43593590(-) m6A CDS//exon       24209618//27773535//27371828//22575960
chr6:43593984-43593985(-) m6A CDS//exon       24284625//24209618//27773535//27371828//22575960
chr6:43594037-43594038(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960
chr6:43594671-43594672(-) m6A 5'UTR//CDS//exon       24284625//24209618//27773535
chr6:43596756-43596757(-) m6A CDS       25456834//24981863//27371828//27773536
chr6:43596769-43596770(-) m1A CDS       26863196//26863410
chr6:43596829-43596830(-) m6A CDS       25456834//24981863//27773535//27371828//27773536
chr6:43596885-43596886(-) Y CDS       26075521
chr6:43596894-43596895(-) m6A CDS       25456834//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320c
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Pooled sera     27278097
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Ovarian follicular fluid     22116803
Exosome Plasma     23663360
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Nasopharyngeal carcinoma cells     20498841
GTPBP2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320c
Interactor2: GTPBP2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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