Detail Information

Basic Information:


  VIRBase ID:  

HHID00068547

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-944:           KDM5B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-944 KDM5B
miRBase
Accession/Entrez ID		 MIMAT0004987 10765
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CT31//JARID1B//MRT65//PLU-1//PLU1//PPP1R98//PUT1//RBBP2H1A//RBP2-H1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-944
rs1199500256 chr3:189829992    A/G
rs1199867192 chr3:189829983    G/A
rs1295334154 chr3:189829986    C/T
rs190786647 chr3:189829990    G/A
rs190786647 chr3:189829990    G/C
rs190786647 chr3:189829990    G/T
rs746272741 chr3:189829988    T/A
rs77473380 chr3:189829989    C/T
rs921285978 chr3:189829987    A/G
rs1248158579 chr3:189829982    T/C
rs1248158579 chr3:189829982    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KDM5B
chr1:202749426(-) A-I      intronic
chr1:202749420(-) A-I      intronic
chr1:202723001(-) A-I      intronic
chr1:202722980(-) A-I      intronic
chr1:202722974(-) A-I      intronic
chr1:202722973(-) A-I      intronic
chr1:202745250(-) A-I      ncRNA
chr1:202722561(-) A-I      intronic
chr1:202749430(-) A-I      intronic
chr1:202722554(-) A-I      intronic
chr1:202722535(-) A-I      intronic
chr1:202755983(-) A-I      intronic
chr1:202755381(-) A-I      intronic
chr1:202748485(-) A-I      intronic
chr1:202769300(-) A-I      intronic
chr1:202772079(-) A-I      intronic
chr1:202771795(-) A-I      intronic
chr1:202751527(-) A-I      intronic
chr1:202771770(-) A-I      intronic
chr1:202769350(-) A-I      intronic
chr1:202746891(-) A-I      intronic
chr1:202738580(-) A-I      intronic
chr1:202745811(-) A-I      intronic
chr1:202761011(-) A-I      intronic
chr1:202713653(-) A-I      intronic
chr1:202718563(-) A-I      intronic
chr1:202769748(-) A-I      intronic
chr1:202718573(-) A-I      intronic
chr1:202718677(-) A-I      intronic
chr1:202771715(-) A-I      intronic
chr1:202722391(-) A-I      intronic
chr1:202722420(-) A-I      intronic
chr1:202722458(-) A-I      intronic
chr1:202722460(-) A-I      intronic
chr1:202722461(-) A-I      intronic
chr1:202722870(-) A-I      intronic
chr1:202749545(-) A-I      intronic
chr1:202749500(-) A-I      intronic
chr1:202749452(-) A-I      intronic
chr1:202769742(-) A-I      intronic
chr1:202748555(-) A-I      intronic
chr1:202748550(-) A-I      intronic
chr1:202769351(-) A-I      intronic
chr1:202748022(-) A-I      intronic
chr1:202771688(-) A-I      intronic
chr1:202722904(-) A-I      intronic
chr1:202722971(-) A-I      intronic
chr1:202769633(-) A-I      intronic
chr1:202747888(-) A-I      intronic
chr1:202723083(-) A-I      intronic
chr1:202738233(-) A-I      intronic
chr1:202747883(-) A-I      intronic
chr1:202769661(-) A-I      intronic
chr1:202738237(-) A-I      intronic
chr1:202738262(-) A-I      intronic
chr1:202738341(-) A-I      intronic
chr1:202746899(-) A-I      intronic
chr1:202738359(-) A-I      intronic
chr1:202738367(-) A-I      intronic
chr1:202755196(-) A-I      intronic
chr1:202755206(-) A-I      intronic
chr1:202755230(-) A-I      intronic
chr1:202755272(-) A-I      intronic
chr1:202755932(-) A-I      intronic
chr1:202756337(-) A-I      intronic
chr1:202756418(-) A-I      intronic
chr1:202738369(-) A-I      intronic
chr1:202756420(-) A-I      intronic
chr1:202769507(-) A-I      intronic
chr1:202756935(-) A-I      intronic
chr1:202757007(-) A-I      intronic
chr1:202757019(-) A-I      intronic
chr1:202760932(-) A-I      intronic
chr1:202762127(-) A-I      intronic
chr1:202769714(-) A-I      intronic
chr1:202762129(-) A-I      intronic
chr1:202764179(-) A-I      intronic
chr1:202767476(-) A-I      intronic
chr1:202768699(-) A-I      intronic
chr1:202768724(-) A-I      intronic
chr1:202769585(-) A-I      intronic
chr1:202769268(-) A-I      intronic
chr1:202772227(-) A-I      intronic
chr1:202738714(-) A-I      intronic
chr1:202748023(-) A-I      intronic
chr1:202760876(-) A-I      intronic
chr1:202723988(-) A-I      intronic
chr1:202769443(-) A-I      intronic
chr1:202756228(-) A-I      intronic
chr1:202756176(-) A-I      intronic
chr1:202718599(-) A-I      intronic
chr1:202749550(-) A-I      intronic
chr1:202750239(-) A-I      intronic
chr1:202769695(-) A-I      intronic
chr1:202723989(-) A-I      intronic
chr1:202750264(-) A-I      intronic
chr1:202746669(-) A-I      intronic
chr1:202718530(-) A-I      intronic
chr1:202746853(-) A-I      intronic
chr1:202755292(-) A-I      intronic
chr1:202754061(-) A-I      intronic
chr1:202754046(-) A-I      intronic
chr1:202756304(-) A-I      intronic
chr1:202746684(-) A-I      intronic
chr1:202750181(-) A-I      intronic
chr1:202738361(-) A-I      intronic
chr1:202759022(-) A-I      intronic
chr1:202748029(-) A-I      intronic
chr1:202719545(-) A-I      intronic
chr1:202723024(-) A-I      intronic
chr1:202761107(-) A-I      intronic
chr1:202764300(-) A-I      intronic
chr1:202723910(-) A-I      intronic
chr1:202743552(-) A-I      intronic
chr1:202769607(-) A-I      intronic
chr1:202722444(-) A-I      intronic
chr1:202738635(-) A-I      intronic
chr1:202755417(-) A-I      intronic
chr1:202719544(-) A-I      intronic
chr1:202764680(-) A-I      intronic
chr1:202719689(-) A-I      intronic
chr1:202745854(-) A-I      intronic
chr1:202745713(-) A-I      intronic
chr1:202738759(-) A-I      intronic
chr1:202767085(-) A-I      intronic
chr1:202753923(-) A-I      intronic
chr1:202761029(-) A-I      intronic
chr1:202753902(-) A-I      intronic
chr1:202734100(-) A-I      intronic
chr1:202756961(-) A-I      intronic
chr1:202746772(-) A-I      intronic
chr1:202747953(-) A-I      intronic
chr1:202740425(-) A-I      intronic
chr1:202756299(-) A-I      intronic
chr1:202748390(-) A-I      intronic
chr1:202722541(-) A-I      intronic
chr1:202748405(-) A-I      intronic
chr1:202717825(-) A-I      intronic
chr1:202750401(-) A-I      intronic
chr1:202722936(-) A-I      intronic
chr1:202759085(-) A-I      intronic
chr1:202754926(-) A-I      intronic
chr1:202768659(-) A-I      intronic
chr1:202769337(-) A-I      intronic
chr1:202769311(-) A-I      intronic
chr1:202768619(-) A-I      intronic
chr1:202735444(-) A-I      intronic
chr1:202745894(-) A-I      intronic
chr1:202758537(-) A-I      intronic
chr1:202738615(-) A-I      intronic
chr1:202745828(-) A-I      intronic
chr1:202738631(-) A-I      intronic
chr1:202761026(-) A-I      intronic
chr1:202722540(-) A-I      intronic
chr1:202738685(-) A-I      intronic
chr1:202748446(-) A-I      intronic
chr1:202740848(-) A-I      intronic
chr1:202772206(-) A-I      intronic
chr1:202738437(-) A-I      intronic
chr1:202755931(-) A-I      intronic
chr1:202746879(-) A-I      intronic
chr1:202756346(-) A-I      intronic
chr1:202747052(-) A-I      intronic
chr1:202740488(-) A-I      intronic
chr1:202719676(-) A-I      intronic
chr1:202746906(-) A-I      intronic
chr1:202745966(-) A-I      intronic
chr1:202749447(-) A-I      intronic
chr1:202767536(-) A-I      intronic
chr1:202738632(-) A-I      intronic
chr1:202718499(-) A-I      intronic
chr1:202718623(-) A-I      intronic
chr1:202750233(-) A-I      intronic
chr1:202764592(-) A-I      intronic
chr1:202735377(-) A-I      intronic
chr1:202738697(-) A-I      intronic
chr1:202761115(-) A-I      intronic
chr1:202769341(-) A-I      intronic
chr1:202738710(-) A-I      intronic
chr1:202767915(-) A-I      intronic
chr1:202768695(-) A-I      intronic
chr1:202738121(-) A-I      intronic
chr1:202744202(-) A-I      intronic
chr1:202738436(-) A-I      intronic
chr1:202750311(-) A-I      intronic
chr1:202756242(-) A-I      intronic
chr1:202754950(-) A-I      intronic
chr1:202753905(-) A-I      intronic
chr1:202768537(-) A-I      intronic
chr1:202754124(-) A-I      intronic
chr1:202738554(-) A-I      intronic
chr1:202738650(-) A-I      intronic
chr1:202738199(-) A-I      intronic
chr1:202742091(-) A-I      intronic
chr1:202768026(-) A-I      intronic
chr1:202767827(-) A-I      intronic
chr1:202737942(-) A-I      intronic
chr1:202717828(-) A-I      intronic
chr1:202722935(-) A-I      intronic
chr1:202735452(-) A-I      intronic
chr1:202769340(-) A-I      intronic
chr1:202738605(-) A-I      intronic
chr1:202746682(-) A-I      intronic
chr1:202756819(-) A-I      intronic
chr1:202759106(-) A-I      intronic
chr1:202756187(-) A-I      intronic
chr1:202738753(-) A-I      intronic
chr1:202738675(-) A-I      intronic
chr1:202722419(-) A-I      intronic
chr1:202769667(-) A-I      intronic
chr1:202746729(-) A-I      intronic
chr1:202755220(-) A-I      intronic
chr1:202746736(-) A-I      intronic
chr1:202722933(-) A-I      intronic
chr1:202772238(-) A-I      intronic
chr1:202740427(-) A-I      intronic
chr1:202738775(-) A-I      intronic
chr1:202750241(-) A-I      intronic
chr1:202769584(-) A-I      intronic
chr1:202754898(-) A-I      intronic
chr1:202767552(-) A-I      intronic
chr1:202738541(-) A-I      intronic
chr1:202718609(-) A-I      intronic
chr1:202750276(-) A-I      intronic
chr1:202771739(-) A-I      intronic
chr1:202755930(-) A-I      intronic
chr1:202738715(-) A-I      intronic
chr1:202723094(-) A-I      intronic
chr1:202738360(-) A-I      intronic
chr1:202746707(-) A-I      intronic
chr1:202738553(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KDM5B
chr1:202738685(-) A-I intron -    22327324
chr1:202724559(-) A-I exon CDS    21960545
chr1:202723094(-) A-I intron -    21960545
chr1:202750311(-) A-I intron -    21960545
chr1:202752059(-) A-I intron -    21960545
chr1:202754046(-) A-I intron -    21960545
chr1:202754050(-) A-I intron -    21960545
chr1:202756346(-) A-I intron -    21960545
chr1:202772207(-) A-I intron -    21960545
chr1:202718599(-) A-G intron -    22484847
chr1:202718609(-) A-G intron -    22484847
chr1:202718623(-) A-G intron -    22484847
chr1:202719544(-) A-G intron -    22484847
chr1:202719545(-) A-G intron -    22484847
chr1:202722419(-) A-G intron -    22484847
chr1:202722444(-) A-G intron -    22484847
chr1:202722540(-) A-G intron -    22484847
chr1:202722933(-) A-G intron -    22484847
chr1:202722936(-) A-G intron -    22484847
chr1:202733998(-) T-C intron -    22484847
chr1:202738360(-) A-G intron -    22484847
chr1:202738361(-) A-G intron -    22484847
chr1:202738553(-) A-G intron -    22484847
chr1:202738605(-) A-G intron -    22484847
chr1:202738615(-) A-G intron -    22484847
chr1:202738685(-) A-G intron -    22484847
chr1:202738714(-) A-G intron -    22484847
chr1:202738715(-) A-G intron -    22484847
chr1:202738775(-) A-G intron -    22484847
chr1:202745828(-) A-G intron -    22484847
chr1:202748029(-) A-G intron -    22484847
chr1:202748446(-) A-G intron -    22484847
chr1:202750241(-) A-G intron -    22484847
chr1:202755220(-) A-G intron -    22484847
chr1:202755417(-) A-G intron -    22484847
chr1:202755930(-) A-G intron -    22484847
chr1:202755931(-) A-G intron -    22484847
chr1:202756242(-) A-G intron -    22484847
chr1:202764592(-) A-G intron -    22484847
chr1:202764680(-) A-G intron -    22484847
chr1:202768619(-) A-G intron -    22484847
chr1:202768695(-) A-G intron -    22484847
chr1:202769337(-) A-G intron -    22484847
chr1:202769340(-) A-G intron -    22484847
chr1:202769341(-) A-G intron -    22484847
chr1:202769607(-) A-G intron -    22484847
chr1:202771739(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KDM5B
chr1:202697992-202697993(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:202698013-202698014(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:202698077-202698078(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:202698121-202698122(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:202698152-202698153(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:202698160-202698161(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:202698212-202698213(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:202698296-202698297(-) m6A CDS       24284625//27773535//27371828//22608085
chr1:202698504-202698505(-) m6A exon//intron       24284625//27371828//22608085
chr1:202698895-202698896(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr1:202698903-202698904(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr1:202698919-202698920(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr1:202698938-202698939(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr1:202698991-202698992(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr1:202698997-202698998(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr1:202699014-202699015(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr1:202699037-202699038(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr1:202699104-202699105(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22608085
chr1:202700051-202700052(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828//22608085
chr1:202700074-202700075(-) m6A CDS//exon       27773535//22608085
chr1:202700107-202700108(-) m6A CDS//exon       27773535
chr1:202700117-202700118(-) m6A CDS//exon       27773535
chr1:202700168-202700169(-) m6A CDS//exon       27773535
chr1:202701009-202701010(-) m6A CDS//exon       24284625//24981863//27773535
chr1:202701017-202701018(-) m6A CDS//exon       24284625//24981863//27773535
chr1:202701127-202701128(-) m6A exon//intron       24284625//25456834//24981863//27773535//22608085
chr1:202701211-202701212(-) m6A exon//intron       24284625//25456834//22608085
chr1:202702532-202702533(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//22608085
chr1:202702538-202702539(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//22608085
chr1:202702549-202702550(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//22608085
chr1:202702582-202702583(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27371828//22608085
chr1:202702655-202702656(-) m6A CDS//exon       24284625//24981863//26404942//27371828//22575960//22608085
chr1:202702662-202702663(-) m6A CDS//exon       24284625//24981863//26404942//27371828//22575960//22608085
chr1:202702759-202702760(-) m6A CDS//exon       24284625//24981863//26404942//22608085
chr1:202702858-202702859(-) m6A CDS//exon       24284625//24981863//26404942//27371828//22608085
chr1:202702957-202702958(-) m6A CDS//exon       24284625//24981863//27371828
chr1:202704567-202704568(-) m6A CDS//exon       24284625//24981863
chr1:202729696-202729697(-) m6A CDS       24981863//27773535
chr1:202731904-202731905(-) m6A CDS       24284625//24981863//27773535
chr1:202733227-202733228(-) m6A CDS       24284625//24981863//27773535
chr1:202733242-202733243(-) m6A CDS       24284625//24981863//27773535
chr1:202733252-202733253(-) m6A CDS       24284625//24981863//27773535
chr1:202735629-202735630(-) m6A CDS//intron       24981863//27773535
chr1:202736137-202736138(-) m6A CDS       24981863
chr1:202736150-202736151(-) m6A CDS       24981863
chr1:202736159-202736160(-) m6A 3'UTR//CDS       24981863
chr1:202736171-202736172(-) m6A 3'UTR//CDS       24981863
chr1:202742255-202742256(-) m6A 3'UTR//CDS       -
chr1:202777258-202777259(-) m6A CDS       -
chr1:202777302-202777303(-) m6A CDS       27371828//27773536
chr1:202777325-202777326(-) m6A CDS       27371828//27773536
chr1:202777499-202777500(-) m6A 5'UTR       24981863//27371828//27773536
chr1:202777537-202777538(-) m6A 5'UTR       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-944
Exosome Tongue tissue     -
Microvesicle Mesenchymal stem cells     -
KDM5B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-944
Interactor2: KDM5B

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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